Wall clock time and date at job start Sat Apr 11 2020 05:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 110.64416 * 2 1 4 4 C 1.54325 * 110.71807 * 123.14491 * 2 1 3 5 5 N 1.47023 * 107.27284 * 140.72951 * 4 2 1 6 6 C 1.34778 * 125.64979 * 181.01769 * 5 4 2 7 7 O 1.21278 * 119.99748 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00209 * 180.02562 * 6 5 4 9 9 S 1.80999 * 109.47181 * 180.02562 * 8 6 5 10 10 C 1.76199 * 99.99825 * 179.97438 * 9 8 6 11 11 H 1.08002 * 120.00405 * 0.02562 * 10 9 8 12 12 C 1.38803 * 119.99855 * 179.72221 * 10 9 8 13 13 N 1.31634 * 119.99756 * 0.27728 * 12 10 9 14 14 Si 1.86803 * 120.00005 * 180.27923 * 12 10 9 15 15 H 1.48496 * 109.47141 * 59.99753 * 14 12 10 16 16 H 1.48497 * 109.46782 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46993 * 300.00030 * 14 12 10 18 18 C 1.47422 * 108.70279 * 1.28568 * 5 4 2 19 19 C 1.55131 * 104.72363 * 335.55352 * 18 5 4 20 20 H 1.09001 * 110.94061 * 155.28880 * 19 18 5 21 21 N 1.46500 * 111.19092 * 279.19199 * 19 18 5 22 22 C 1.38570 * 120.00027 * 267.18364 * 21 19 18 23 23 C 1.39469 * 120.51367 * 0.02562 * 22 21 19 24 24 C 1.38471 * 118.31031 * 180.02562 * 23 22 21 25 25 F 1.35098 * 120.43020 * 180.02562 * 24 23 22 26 26 N 1.32786 * 119.13596 * 359.97438 * 24 23 22 27 27 C 1.31758 * 120.96833 * 0.02562 * 26 24 23 28 28 N 1.31762 * 121.85622 * 359.71286 * 27 26 24 29 29 H 1.09004 * 109.47032 * 298.31458 * 1 2 3 30 30 H 1.09006 * 109.46616 * 58.30915 * 1 2 3 31 31 H 1.08999 * 109.47810 * 178.31421 * 1 2 3 32 32 H 1.08998 * 109.88499 * 21.30886 * 4 2 1 33 33 H 1.09002 * 110.00828 * 260.21620 * 4 2 1 34 34 H 1.08999 * 109.47278 * 59.99800 * 8 6 5 35 35 H 1.09002 * 109.46837 * 300.00183 * 8 6 5 36 36 H 0.97000 * 119.99219 * 179.97438 * 13 12 10 37 37 H 1.09003 * 110.36588 * 94.47991 * 18 5 4 38 38 H 1.09004 * 110.36868 * 216.80396 * 18 5 4 39 39 H 0.97002 * 120.00247 * 87.18457 * 21 19 18 40 40 H 1.07994 * 120.84405 * 359.97438 * 23 22 21 41 41 H 1.08003 * 119.07367 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0199 0.0000 4 6 2.0759 -0.7892 1.2086 5 7 3.2469 -1.5463 0.7426 6 6 3.9956 -2.3769 1.4951 7 8 3.7210 -2.5496 2.6637 8 6 5.1737 -3.0910 0.8844 9 16 5.9692 -4.1249 2.1391 10 6 7.2724 -4.8220 1.1797 11 1 7.3767 -4.5580 0.1377 12 6 8.1689 -5.7055 1.7649 13 7 8.0421 -6.0268 3.0351 14 14 9.5553 -6.4384 0.7498 15 1 10.4163 -5.3474 0.2271 16 1 10.3664 -7.3450 1.6015 17 1 8.9847 -7.2061 -0.3861 18 6 3.4706 -1.2415 -0.6823 19 6 2.0827 -0.7949 -1.2125 20 1 2.1880 -0.1517 -2.0862 21 7 1.2341 -1.9505 -1.5138 22 6 1.2121 -2.4787 -2.7946 23 6 1.9939 -1.9191 -3.8050 24 6 1.9363 -2.4830 -5.0684 25 9 2.6760 -1.9755 -6.0785 26 7 1.1454 -3.5296 -5.2738 27 6 0.4198 -4.0333 -4.2961 28 7 0.4487 -3.5307 -3.0785 29 1 -0.3633 0.4875 0.9047 30 1 -0.3633 0.5399 -0.8745 31 1 -0.3635 -1.0272 -0.0302 32 1 1.3139 -1.4754 1.5781 33 1 2.3707 -0.1012 2.0010 34 1 5.8887 -2.3582 0.5102 35 1 4.8316 -3.7180 0.0610 36 1 8.6684 -6.6445 3.4438 37 1 4.1969 -0.4357 -0.7884 38 1 3.8101 -2.1316 -1.2120 39 1 0.6876 -2.3458 -0.8167 40 1 2.6274 -1.0671 -3.6072 41 1 -0.2133 -4.8849 -4.4974 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112306840.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:37 Heat of formation + Delta-G solvation = -37.900323 kcal Electronic energy + Delta-G solvation = -26695.548909 eV Core-core repulsion = 22650.862297 eV Total energy + Delta-G solvation = -4044.686612 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -50.20332 -42.04374 -41.19038 -39.30407 -36.47719 -34.62187 -34.27043 -33.58445 -31.71793 -30.96585 -29.82500 -27.78489 -26.95138 -25.71657 -24.79374 -23.70039 -21.24074 -20.82558 -19.97654 -19.57030 -19.18046 -18.07694 -17.67656 -17.32825 -16.91684 -16.83680 -16.75465 -16.64432 -16.19521 -15.72392 -15.66279 -15.41578 -15.18725 -14.71665 -14.67369 -14.55068 -14.34313 -13.77718 -13.63372 -13.49657 -13.21729 -13.16436 -12.89883 -12.72756 -12.62929 -12.15695 -12.01557 -11.82676 -11.76084 -11.64094 -11.16234 -11.04025 -10.88020 -10.53931 -10.33607 -9.83027 -9.31293 -8.71856 -8.37950 -6.17003 -0.17425 0.14291 1.20319 1.41173 1.41955 1.51429 1.52211 1.75722 2.03371 2.24095 2.37501 2.68461 2.96243 3.12455 3.21575 3.30546 3.39635 3.58637 3.73754 3.84356 3.99998 4.13088 4.14516 4.17088 4.32844 4.38043 4.46143 4.53072 4.60455 4.61642 4.73635 4.78580 5.01615 5.09500 5.20411 5.32755 5.37493 5.38664 5.53322 6.01193 6.15766 6.29088 6.33460 7.03131 7.06832 7.06965 8.71126 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.009644 B = 0.003221 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.729512 B = 8690.066111 C =10793.504794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 H 0.134 0.866 4 C 0.101 3.899 5 N -0.613 5.613 6 C 0.546 3.454 7 O -0.565 6.565 8 C -0.119 4.119 9 S -0.148 6.148 10 C -0.549 4.549 11 H 0.080 0.920 12 C 0.016 3.984 13 N -0.910 5.910 14 Si 0.997 3.003 15 H -0.260 1.260 16 H -0.277 1.277 17 H -0.264 1.264 18 C 0.073 3.927 19 C 0.141 3.859 20 H 0.149 0.851 21 N -0.684 5.684 22 C 0.459 3.541 23 C -0.310 4.310 24 C 0.366 3.634 25 F -0.107 7.107 26 N -0.617 5.617 27 C 0.375 3.625 28 N -0.601 5.601 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.272 0.728 37 H 0.113 0.887 38 H 0.073 0.927 39 H 0.412 0.588 40 H 0.182 0.818 41 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.146 16.061 -16.313 28.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.106 4.106 3 H 0.152 0.848 4 C -0.021 4.021 5 N -0.347 5.347 6 C 0.334 3.666 7 O -0.443 6.443 8 C -0.270 4.270 9 S 0.079 5.921 10 C -0.697 4.697 11 H 0.099 0.901 12 C -0.189 4.189 13 N -0.546 5.546 14 Si 0.818 3.182 15 H -0.185 1.185 16 H -0.202 1.202 17 H -0.189 1.189 18 C -0.051 4.051 19 C 0.036 3.964 20 H 0.166 0.834 21 N -0.315 5.315 22 C 0.215 3.785 23 C -0.339 4.339 24 C 0.209 3.791 25 F -0.086 7.086 26 N -0.343 5.343 27 C 0.086 3.914 28 N -0.326 5.326 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.125 0.875 35 H 0.115 0.885 36 H 0.081 0.919 37 H 0.131 0.869 38 H 0.092 0.908 39 H 0.250 0.750 40 H 0.199 0.801 41 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -17.836 15.135 -14.557 27.552 hybrid contribution 1.721 -0.175 -1.126 2.064 sum -16.115 14.960 -15.683 27.009 Atomic orbital electron populations 1.21706 0.92176 1.02215 1.03599 1.22547 0.97633 1.00216 0.90200 0.84835 1.22266 0.86818 0.94618 0.98426 1.48323 1.29971 1.44285 1.12159 1.19695 0.82924 0.78509 0.85433 1.90696 1.71189 1.64308 1.18153 1.23285 0.98437 1.02158 1.03155 1.85555 1.34964 1.54820 1.16732 1.23141 1.15283 1.32223 0.99008 0.90139 1.26107 1.00483 0.95847 0.96429 1.70173 1.37843 1.33676 1.12940 0.85033 0.77037 0.78276 0.77852 1.18467 1.20183 1.18864 1.23303 0.99150 1.02757 0.79846 1.22527 0.87533 0.86228 1.00141 0.83356 1.44604 1.47141 1.32898 1.06830 1.18441 0.86759 0.86865 0.86486 1.21970 1.10705 1.09371 0.91899 1.18255 0.87730 0.89267 0.83840 1.91649 1.72886 1.84492 1.59581 1.67864 1.13030 1.14474 1.38964 1.25105 0.90221 0.95408 0.80638 1.68064 1.26423 1.13981 1.24140 0.91130 0.90337 0.93174 0.92417 0.91383 0.87477 0.88520 0.91896 0.86909 0.90849 0.74987 0.80058 0.75032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.81 71.98 0.63 -0.25 16 2 C -0.09 -0.65 3.41 -9.60 -0.03 -0.68 16 3 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 4 C 0.10 1.80 6.45 86.73 0.56 2.36 16 5 N -0.61 -14.70 3.32 -811.35 -2.70 -17.40 16 6 C 0.55 20.33 7.87 87.66 0.69 21.02 16 7 O -0.56 -26.45 16.19 -3.02 -0.05 -26.49 16 8 C -0.12 -4.82 5.16 71.23 0.37 -4.45 16 9 S -0.15 -8.30 20.57 -56.49 -1.16 -9.46 16 10 C -0.55 -31.61 9.50 67.96 0.65 -30.96 16 11 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 12 C 0.02 0.94 5.49 84.86 0.47 1.40 16 13 N -0.91 -56.12 13.22 21.65 0.29 -55.83 16 14 Si 1.00 43.77 29.55 68.60 2.03 45.80 16 15 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 16 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 17 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 18 C 0.07 1.07 6.41 86.93 0.56 1.62 16 19 C 0.14 1.17 2.92 46.46 0.14 1.31 16 20 H 0.15 0.30 6.38 -2.39 -0.02 0.29 16 21 N -0.68 -8.82 4.69 -317.20 -1.49 -10.30 16 22 C 0.46 7.52 7.71 133.10 1.03 8.54 16 23 C -0.31 -4.54 9.29 22.62 0.21 -4.33 16 24 C 0.37 7.10 8.50 84.60 0.72 7.81 16 25 F -0.11 -2.11 17.30 44.97 0.78 -1.33 16 26 N -0.62 -12.94 10.45 -201.32 -2.10 -15.04 16 27 C 0.37 6.56 12.28 180.90 2.22 8.78 16 28 N -0.60 -11.50 10.47 -197.69 -2.07 -13.57 16 29 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.08 0.34 8.14 -2.38 -0.02 0.32 16 31 H 0.05 0.44 6.36 -2.39 -0.02 0.42 16 32 H 0.06 1.18 7.82 -2.39 -0.02 1.16 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 35 H 0.10 3.68 7.85 -2.39 -0.02 3.66 16 36 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 37 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 1.30 7.48 -2.38 -0.02 1.28 16 39 H 0.41 6.06 7.27 -92.71 -0.67 5.39 16 40 H 0.18 1.46 6.29 -2.91 -0.02 1.44 16 41 H 0.23 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -82.71 363.36 2.13 -80.58 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.41 Total: 10.89 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: 8.20 Total: 12.18 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -8.07 Total: -112.15 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.05 Total: -26.49 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.78 Total: -1.33 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.16 Total: -9.46 kcal Total: -82.71 2.13 -80.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112306840.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.675 kcal (2) G-P(sol) polarization free energy of solvation -82.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds