Wall clock time and date at job start Sat Apr 11 2020 05:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.64155 * 2 1 4 4 C 1.54319 * 110.71885 * 236.66642 * 2 1 3 5 5 N 1.47020 * 107.27506 * 219.44879 * 4 2 1 6 6 C 1.34775 * 125.65094 * 178.98242 * 5 4 2 7 7 O 1.21282 * 120.00395 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99948 * 179.97438 * 6 5 4 9 9 S 1.80995 * 109.47119 * 179.97438 * 8 6 5 10 10 C 1.76201 * 100.00050 * 180.02562 * 9 8 6 11 11 H 1.07995 * 119.99990 * 0.02562 * 10 9 8 12 12 C 1.38799 * 120.00067 * 180.02562 * 10 9 8 13 13 N 1.31626 * 120.00182 * 180.02562 * 12 10 9 14 14 Si 1.86806 * 120.00160 * 359.97438 * 12 10 9 15 15 H 1.48495 * 109.46932 * 90.00237 * 14 12 10 16 16 H 1.48503 * 109.47029 * 210.00516 * 14 12 10 17 17 H 1.48501 * 109.46618 * 330.00372 * 14 12 10 18 18 C 1.47532 * 108.71239 * 358.93788 * 5 4 2 19 19 C 1.54911 * 104.78034 * 24.12568 * 18 5 4 20 20 H 1.08997 * 110.99911 * 204.90260 * 19 18 5 21 21 N 1.46494 * 111.00522 * 81.08825 * 19 18 5 22 22 C 1.38569 * 120.00105 * 89.57975 * 21 19 18 23 23 C 1.39464 * 120.51566 * 0.27981 * 22 21 19 24 24 C 1.38473 * 118.30791 * 180.26045 * 23 22 21 25 25 F 1.35104 * 120.42672 * 179.73371 * 24 23 22 26 26 N 1.32783 * 119.13862 * 359.46426 * 24 23 22 27 27 C 1.31753 * 120.96666 * 0.27450 * 26 24 23 28 28 N 1.31763 * 121.86124 * 359.97438 * 27 26 24 29 29 H 1.08999 * 109.46884 * 296.85685 * 1 2 3 30 30 H 1.09003 * 109.46635 * 56.85005 * 1 2 3 31 31 H 1.08988 * 109.47708 * 176.85548 * 1 2 3 32 32 H 1.09006 * 109.88511 * 338.86600 * 4 2 1 33 33 H 1.09007 * 109.88557 * 99.86980 * 4 2 1 34 34 H 1.09000 * 109.47361 * 299.99911 * 8 6 5 35 35 H 1.08998 * 109.47221 * 59.99635 * 8 6 5 36 36 H 0.97003 * 120.00579 * 179.97438 * 13 12 10 37 37 H 1.09000 * 110.37285 * 265.30891 * 18 5 4 38 38 H 1.09001 * 110.40634 * 142.95687 * 18 5 4 39 39 H 0.97002 * 119.99681 * 269.57659 * 21 19 18 40 40 H 1.07992 * 120.84275 * 0.02562 * 23 22 21 41 41 H 1.08008 * 119.07373 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0759 -0.7932 -1.2059 5 7 3.2444 -1.5521 -0.7365 6 6 3.9921 -2.3861 -1.4859 7 8 3.7191 -2.5608 -2.6546 8 6 5.1676 -3.1017 -0.8717 9 16 5.9626 -4.1403 -2.1228 10 6 7.2626 -4.8384 -1.1599 11 1 7.3653 -4.5731 -0.1181 12 6 8.1547 -5.7294 -1.7403 13 7 9.1256 -6.2513 -1.0208 14 14 7.9766 -6.1890 -3.5421 15 1 8.7642 -5.2442 -4.3741 16 1 8.4786 -7.5707 -3.7524 17 1 6.5455 -6.1176 -3.9320 18 6 3.4636 -1.2488 0.6906 19 6 2.0789 -0.7935 1.2151 20 1 2.1844 -0.1486 2.0874 21 7 1.2271 -1.9463 1.5177 22 6 1.2512 -2.5127 2.7821 23 6 2.0779 -1.9904 3.7764 24 6 2.0699 -2.5954 5.0219 25 9 2.8580 -2.1280 6.0148 26 7 1.2737 -3.6376 5.2294 27 6 0.5009 -4.1021 4.2687 28 7 0.4814 -3.5595 3.0681 29 1 -0.3633 0.4643 0.9168 30 1 -0.3633 0.5620 -0.8605 31 1 -0.3634 -1.0260 -0.0564 32 1 1.3128 -1.4784 -1.5752 33 1 2.3715 -0.1058 -1.9987 34 1 5.8838 -2.3699 -0.4980 35 1 4.8227 -3.7260 -0.0474 36 1 9.7488 -6.8743 -1.4263 37 1 4.1933 -0.4465 0.8002 38 1 3.7961 -2.1405 1.2219 39 1 0.6461 -2.3131 0.8329 40 1 2.7111 -1.1382 3.5788 41 1 -0.1352 -4.9512 4.4712 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112306841.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:41 Heat of formation + Delta-G solvation = -13.950296 kcal Electronic energy + Delta-G solvation = -26763.515566 eV Core-core repulsion = 22719.867506 eV Total energy + Delta-G solvation = -4043.648061 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.42867 -41.34801 -40.29355 -38.24845 -35.67653 -33.45259 -32.90483 -32.46899 -31.03190 -29.71496 -29.13009 -26.34594 -25.60416 -24.99209 -24.08421 -22.96724 -20.66599 -19.74877 -19.14569 -18.50768 -17.73975 -16.91369 -16.83755 -16.55707 -16.12172 -15.91406 -15.68982 -15.19826 -14.97853 -14.86882 -14.55403 -14.51837 -14.05926 -13.94872 -13.82177 -13.50775 -13.15312 -12.87077 -12.77005 -12.57736 -12.24119 -11.98188 -11.60323 -11.44082 -11.31275 -11.27016 -11.04614 -11.03535 -10.65105 -10.18077 -9.89452 -9.79861 -9.64480 -9.03491 -8.91060 -8.58870 -8.54891 -6.96591 -6.31649 -4.04310 0.52582 0.85923 2.35766 2.57982 2.83442 3.07893 3.10428 3.30537 3.39005 3.47724 3.54085 3.72819 3.86401 3.99840 4.20547 4.25653 4.30223 4.60166 4.64456 4.70823 4.77154 4.81907 4.87800 5.06785 5.07534 5.09567 5.20504 5.22396 5.30022 5.35775 5.52445 5.56941 5.68461 5.73483 5.86666 5.93090 6.15860 6.18848 6.66252 6.99280 7.39504 7.75907 7.91172 8.31484 8.38525 9.14235 10.77574 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010590 B = 0.003202 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.382875 B = 8741.855482 C =10553.570302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 H 0.105 0.895 4 C 0.109 3.891 5 N -0.623 5.623 6 C 0.548 3.452 7 O -0.514 6.514 8 C -0.118 4.118 9 S -0.140 6.140 10 C -0.522 4.522 11 H 0.088 0.912 12 C 0.097 3.903 13 N -0.879 5.879 14 Si 0.856 3.144 15 H -0.267 1.267 16 H -0.273 1.273 17 H -0.235 1.235 18 C 0.082 3.918 19 C 0.135 3.865 20 H 0.112 0.888 21 N -0.688 5.688 22 C 0.467 3.533 23 C -0.321 4.321 24 C 0.387 3.613 25 F -0.101 7.101 26 N -0.593 5.593 27 C 0.379 3.621 28 N -0.582 5.582 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.271 0.729 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.414 0.586 40 H 0.155 0.845 41 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.852 14.946 9.554 26.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.126 4.126 3 H 0.124 0.876 4 C -0.014 4.014 5 N -0.360 5.360 6 C 0.337 3.663 7 O -0.388 6.388 8 C -0.268 4.268 9 S 0.086 5.914 10 C -0.670 4.670 11 H 0.106 0.894 12 C -0.112 4.112 13 N -0.516 5.516 14 Si 0.681 3.319 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.159 1.159 18 C -0.042 4.042 19 C 0.029 3.971 20 H 0.129 0.871 21 N -0.320 5.320 22 C 0.223 3.777 23 C -0.350 4.350 24 C 0.228 3.772 25 F -0.080 7.080 26 N -0.318 5.318 27 C 0.090 3.910 28 N -0.307 5.307 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.253 0.747 40 H 0.172 0.828 41 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -20.427 13.956 7.929 25.979 hybrid contribution 1.133 0.458 0.582 1.354 sum -19.294 14.414 8.511 25.543 Atomic orbital electron populations 1.21718 0.93009 1.02482 1.02759 1.22557 0.97243 0.99814 0.92973 0.87648 1.21996 0.88271 0.94776 0.96309 1.48411 1.30796 1.46046 1.10793 1.19999 0.82728 0.77726 0.85855 1.90718 1.69814 1.62283 1.15965 1.23251 0.97465 1.02150 1.03965 1.84787 1.36164 1.54201 1.16258 1.22291 1.13607 1.31424 0.99662 0.89423 1.24701 0.93747 0.94252 0.98485 1.69933 1.15475 1.29492 1.36660 0.86745 0.81588 0.78756 0.84833 1.19162 1.19857 1.15943 1.22911 0.96690 1.02280 0.82366 1.22306 0.89517 0.86619 0.98678 0.87053 1.44470 1.45552 1.32615 1.09384 1.18234 0.86807 0.86900 0.85808 1.21801 1.10491 1.08906 0.93822 1.18002 0.86705 0.88966 0.83477 1.91672 1.69988 1.85941 1.60414 1.67857 1.11479 1.14801 1.37701 1.24557 0.90239 0.94915 0.81308 1.68023 1.26583 1.12504 1.23586 0.91710 0.91502 0.92229 0.91236 0.90909 0.88581 0.88759 0.91885 0.89610 0.89650 0.74665 0.82786 0.77583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.62 8.71 37.16 0.32 -0.30 16 2 C -0.11 -0.55 3.42 -88.79 -0.30 -0.85 16 3 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 4 C 0.11 1.00 6.46 -3.07 -0.02 0.98 16 5 N -0.62 -7.53 3.33 -170.43 -0.57 -8.10 16 6 C 0.55 9.64 7.87 -10.98 -0.09 9.56 16 7 O -0.51 -10.98 16.19 5.56 0.09 -10.89 16 8 C -0.12 -2.29 5.16 36.01 0.19 -2.10 16 9 S -0.14 -3.56 18.55 -107.50 -1.99 -5.56 16 10 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 11 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 12 C 0.10 2.84 5.50 -17.43 -0.10 2.74 16 13 N -0.88 -26.56 13.97 55.49 0.78 -25.78 16 14 Si 0.86 21.77 27.74 -169.99 -4.72 17.05 16 15 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 18 C 0.08 0.71 6.39 -2.47 -0.02 0.69 16 19 C 0.14 0.79 2.82 -65.78 -0.19 0.60 16 20 H 0.11 0.42 6.55 -51.93 -0.34 0.08 16 21 N -0.69 -5.14 4.78 -51.73 -0.25 -5.39 16 22 C 0.47 4.31 7.71 -154.76 -1.19 3.12 16 23 C -0.32 -2.81 9.29 -39.04 -0.36 -3.17 16 24 C 0.39 4.11 8.50 -17.05 -0.14 3.97 16 25 F -0.10 -1.09 17.30 2.25 0.04 -1.06 16 26 N -0.59 -6.61 10.44 -14.98 -0.16 -6.77 16 27 C 0.38 3.56 12.28 -92.22 -1.13 2.42 16 28 N -0.58 -5.94 10.47 -13.84 -0.14 -6.08 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.30 6.42 -51.94 -0.33 -0.03 16 32 H 0.07 0.68 7.77 -51.93 -0.40 0.28 16 33 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 34 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 35 H 0.09 1.76 7.85 -51.92 -0.41 1.35 16 36 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.85 7.48 -51.93 -0.39 0.46 16 39 H 0.41 3.23 7.15 -40.82 -0.29 2.94 16 40 H 0.15 0.97 6.36 -52.49 -0.33 0.63 16 41 H 0.21 1.19 8.06 -52.48 -0.42 0.77 16 LS Contribution 360.69 15.07 5.44 5.44 Total: -1.00 -35.78 360.69 -9.24 -45.02 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -5.03 Total: -0.80 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -2.72 Total: 2.91 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: -0.34 Total: -52.12 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 9 Polarization: -1.09 SS G_CDS: 0.04 Total: -1.06 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.72 Total: 17.05 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.78 -9.24 -45.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112306841.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.070 kcal (2) G-P(sol) polarization free energy of solvation -35.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds