Wall clock time and date at job start Sat Apr 11 2020 05:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.64155 * 2 1 4 4 C 1.54319 * 110.71885 * 236.66642 * 2 1 3 5 5 N 1.47020 * 107.27506 * 219.44879 * 4 2 1 6 6 C 1.34775 * 125.65094 * 178.98242 * 5 4 2 7 7 O 1.21282 * 120.00395 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99948 * 179.97438 * 6 5 4 9 9 S 1.80995 * 109.47119 * 179.97438 * 8 6 5 10 10 C 1.76201 * 100.00050 * 180.02562 * 9 8 6 11 11 H 1.07995 * 119.99990 * 0.02562 * 10 9 8 12 12 C 1.38799 * 120.00067 * 180.02562 * 10 9 8 13 13 N 1.31626 * 120.00182 * 180.02562 * 12 10 9 14 14 Si 1.86806 * 120.00160 * 359.97438 * 12 10 9 15 15 H 1.48495 * 109.46932 * 90.00237 * 14 12 10 16 16 H 1.48503 * 109.47029 * 210.00516 * 14 12 10 17 17 H 1.48501 * 109.46618 * 330.00372 * 14 12 10 18 18 C 1.47532 * 108.71239 * 358.93788 * 5 4 2 19 19 C 1.54911 * 104.78034 * 24.12568 * 18 5 4 20 20 H 1.08997 * 110.99911 * 204.90260 * 19 18 5 21 21 N 1.46494 * 111.00522 * 81.08825 * 19 18 5 22 22 C 1.38569 * 120.00105 * 89.57975 * 21 19 18 23 23 C 1.39464 * 120.51566 * 0.27981 * 22 21 19 24 24 C 1.38473 * 118.30791 * 180.26045 * 23 22 21 25 25 F 1.35104 * 120.42672 * 179.73371 * 24 23 22 26 26 N 1.32783 * 119.13862 * 359.46426 * 24 23 22 27 27 C 1.31753 * 120.96666 * 0.27450 * 26 24 23 28 28 N 1.31763 * 121.86124 * 359.97438 * 27 26 24 29 29 H 1.08999 * 109.46884 * 296.85685 * 1 2 3 30 30 H 1.09003 * 109.46635 * 56.85005 * 1 2 3 31 31 H 1.08988 * 109.47708 * 176.85548 * 1 2 3 32 32 H 1.09006 * 109.88511 * 338.86600 * 4 2 1 33 33 H 1.09007 * 109.88557 * 99.86980 * 4 2 1 34 34 H 1.09000 * 109.47361 * 299.99911 * 8 6 5 35 35 H 1.08998 * 109.47221 * 59.99635 * 8 6 5 36 36 H 0.97003 * 120.00579 * 179.97438 * 13 12 10 37 37 H 1.09000 * 110.37285 * 265.30891 * 18 5 4 38 38 H 1.09001 * 110.40634 * 142.95687 * 18 5 4 39 39 H 0.97002 * 119.99681 * 269.57659 * 21 19 18 40 40 H 1.07992 * 120.84275 * 0.02562 * 23 22 21 41 41 H 1.08008 * 119.07373 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0759 -0.7932 -1.2059 5 7 3.2444 -1.5521 -0.7365 6 6 3.9921 -2.3861 -1.4859 7 8 3.7191 -2.5608 -2.6546 8 6 5.1676 -3.1017 -0.8717 9 16 5.9626 -4.1403 -2.1228 10 6 7.2626 -4.8384 -1.1599 11 1 7.3653 -4.5731 -0.1181 12 6 8.1547 -5.7294 -1.7403 13 7 9.1256 -6.2513 -1.0208 14 14 7.9766 -6.1890 -3.5421 15 1 8.7642 -5.2442 -4.3741 16 1 8.4786 -7.5707 -3.7524 17 1 6.5455 -6.1176 -3.9320 18 6 3.4636 -1.2488 0.6906 19 6 2.0789 -0.7935 1.2151 20 1 2.1844 -0.1486 2.0874 21 7 1.2271 -1.9463 1.5177 22 6 1.2512 -2.5127 2.7821 23 6 2.0779 -1.9904 3.7764 24 6 2.0699 -2.5954 5.0219 25 9 2.8580 -2.1280 6.0148 26 7 1.2737 -3.6376 5.2294 27 6 0.5009 -4.1021 4.2687 28 7 0.4814 -3.5595 3.0681 29 1 -0.3633 0.4643 0.9168 30 1 -0.3633 0.5620 -0.8605 31 1 -0.3634 -1.0260 -0.0564 32 1 1.3128 -1.4784 -1.5752 33 1 2.3715 -0.1058 -1.9987 34 1 5.8838 -2.3699 -0.4980 35 1 4.8227 -3.7260 -0.0474 36 1 9.7488 -6.8743 -1.4263 37 1 4.1933 -0.4465 0.8002 38 1 3.7961 -2.1405 1.2219 39 1 0.6461 -2.3131 0.8329 40 1 2.7111 -1.1382 3.5788 41 1 -0.1352 -4.9512 4.4712 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112306841.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:40 Heat of formation + Delta-G solvation = -37.993571 kcal Electronic energy + Delta-G solvation = -26764.558161 eV Core-core repulsion = 22719.867506 eV Total energy + Delta-G solvation = -4044.690655 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.20802 -42.05520 -41.21576 -39.34054 -36.48233 -34.71442 -34.29206 -33.59792 -31.72459 -31.03555 -29.85216 -27.94104 -27.01429 -25.71085 -24.81753 -23.71333 -21.26031 -20.87862 -19.98840 -19.59389 -19.19103 -18.13598 -17.70363 -17.33445 -17.16419 -16.84377 -16.78430 -16.62150 -16.14701 -15.71764 -15.69966 -15.43518 -15.20847 -14.93151 -14.72964 -14.60391 -14.42528 -13.83367 -13.66864 -13.54219 -13.37861 -13.18989 -13.04210 -12.76299 -12.63898 -12.16530 -12.01243 -11.89627 -11.81507 -11.65690 -11.20521 -11.09301 -10.88851 -10.59625 -10.54545 -9.85086 -9.32595 -9.05348 -8.55063 -6.27113 -0.18187 0.13953 0.92060 1.28569 1.41912 1.45974 1.50120 1.75442 1.99125 2.21832 2.37180 2.62770 2.68082 2.83234 3.16273 3.22992 3.36464 3.58421 3.66786 3.79669 3.99758 4.07961 4.12488 4.15583 4.30547 4.34458 4.45475 4.52474 4.59591 4.60723 4.73046 4.78618 5.01859 5.09100 5.18705 5.30126 5.38524 5.52932 5.66704 6.00275 6.07013 6.24879 6.34182 6.89750 7.00536 7.06296 8.57490 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010590 B = 0.003202 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.382875 B = 8741.855482 C =10553.570302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.086 4.086 3 H 0.134 0.866 4 C 0.102 3.898 5 N -0.611 5.611 6 C 0.548 3.452 7 O -0.561 6.561 8 C -0.102 4.102 9 S -0.172 6.172 10 C -0.531 4.531 11 H 0.060 0.940 12 C 0.048 3.952 13 N -0.916 5.916 14 Si 0.914 3.086 15 H -0.260 1.260 16 H -0.258 1.258 17 H -0.238 1.238 18 C 0.071 3.929 19 C 0.141 3.859 20 H 0.147 0.853 21 N -0.684 5.684 22 C 0.459 3.541 23 C -0.311 4.311 24 C 0.365 3.635 25 F -0.108 7.108 26 N -0.618 5.618 27 C 0.374 3.626 28 N -0.599 5.599 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.278 0.722 37 H 0.113 0.887 38 H 0.072 0.928 39 H 0.413 0.587 40 H 0.181 0.819 41 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.258 17.018 9.600 28.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.106 4.106 3 H 0.152 0.848 4 C -0.020 4.020 5 N -0.345 5.345 6 C 0.336 3.664 7 O -0.440 6.440 8 C -0.253 4.253 9 S 0.054 5.946 10 C -0.679 4.679 11 H 0.078 0.922 12 C -0.158 4.158 13 N -0.554 5.554 14 Si 0.735 3.265 15 H -0.184 1.184 16 H -0.182 1.182 17 H -0.162 1.162 18 C -0.053 4.053 19 C 0.035 3.965 20 H 0.165 0.835 21 N -0.315 5.315 22 C 0.214 3.786 23 C -0.340 4.340 24 C 0.208 3.792 25 F -0.087 7.087 26 N -0.344 5.344 27 C 0.086 3.914 28 N -0.325 5.325 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.129 0.871 35 H 0.118 0.882 36 H 0.087 0.913 37 H 0.131 0.869 38 H 0.090 0.910 39 H 0.251 0.749 40 H 0.199 0.801 41 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -21.852 16.069 8.025 28.287 hybrid contribution 1.483 -0.091 0.683 1.635 sum -20.369 15.978 8.708 27.314 Atomic orbital electron populations 1.21711 0.92130 1.02208 1.03688 1.22548 0.97683 1.00215 0.90110 0.84779 1.22273 0.86788 0.94591 0.98356 1.48311 1.30194 1.43984 1.12042 1.19562 0.82798 0.78594 0.85493 1.90695 1.71110 1.64368 1.17820 1.23187 0.98425 1.01654 1.02029 1.84682 1.35498 1.55755 1.18632 1.22427 1.14872 1.31639 0.98917 0.92189 1.25552 0.93445 0.94206 1.02566 1.70011 1.16418 1.30365 1.38581 0.85879 0.81453 0.79266 0.79854 1.18438 1.18209 1.16173 1.23302 0.99324 1.02756 0.79872 1.22503 0.87499 0.86303 1.00185 0.83547 1.44599 1.45373 1.32843 1.08664 1.18437 0.86791 0.86856 0.86488 1.21972 1.10161 1.09173 0.92691 1.18279 0.87192 0.89557 0.84163 1.91650 1.70205 1.86043 1.60783 1.67858 1.12305 1.15561 1.38648 1.25116 0.90093 0.95342 0.80853 1.68070 1.27267 1.13185 1.23948 0.90474 0.90901 0.93141 0.92170 0.91087 0.87109 0.88179 0.91276 0.86866 0.90966 0.74868 0.80142 0.74990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 8.71 71.98 0.63 -0.10 16 2 C -0.09 -0.54 3.42 -9.61 -0.03 -0.57 16 3 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 4 C 0.10 1.62 6.46 86.73 0.56 2.18 16 5 N -0.61 -13.57 3.33 -811.51 -2.70 -16.27 16 6 C 0.55 18.87 7.87 87.66 0.69 19.56 16 7 O -0.56 -24.04 16.19 -3.03 -0.05 -24.09 16 8 C -0.10 -3.92 5.16 71.24 0.37 -3.56 16 9 S -0.17 -8.80 18.55 -56.49 -1.05 -9.84 16 10 C -0.53 -31.20 10.04 67.95 0.68 -30.52 16 11 H 0.06 3.73 8.03 -2.91 -0.02 3.71 16 12 C 0.05 2.83 5.50 84.86 0.47 3.30 16 13 N -0.92 -56.06 13.97 21.65 0.30 -55.75 16 14 Si 0.91 45.13 27.74 68.60 1.90 47.03 16 15 H -0.26 -12.45 7.11 99.48 0.71 -11.74 16 16 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 17 H -0.24 -11.76 6.74 99.48 0.67 -11.09 16 18 C 0.07 0.99 6.39 86.83 0.55 1.54 16 19 C 0.14 1.08 2.82 46.39 0.13 1.21 16 20 H 0.15 0.26 6.55 -2.39 -0.02 0.25 16 21 N -0.68 -8.40 4.78 -317.58 -1.52 -9.91 16 22 C 0.46 7.54 7.71 133.10 1.03 8.57 16 23 C -0.31 -4.74 9.29 22.62 0.21 -4.53 16 24 C 0.37 7.42 8.50 84.61 0.72 8.14 16 25 F -0.11 -2.26 17.30 44.97 0.78 -1.48 16 26 N -0.62 -13.43 10.44 -201.31 -2.10 -15.53 16 27 C 0.37 6.71 12.28 180.91 2.22 8.93 16 28 N -0.60 -11.49 10.47 -197.69 -2.07 -13.56 16 29 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.05 0.38 6.42 -2.39 -0.02 0.36 16 32 H 0.06 1.10 7.77 -2.38 -0.02 1.08 16 33 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 35 H 0.10 3.71 7.85 -2.40 -0.02 3.69 16 36 H 0.28 15.69 8.31 -92.71 -0.77 14.91 16 37 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 1.26 7.48 -2.39 -0.02 1.24 16 39 H 0.41 5.58 7.15 -92.71 -0.66 4.92 16 40 H 0.18 1.59 6.36 -2.91 -0.02 1.57 16 41 H 0.23 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -80.33 360.69 2.10 -78.23 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: 0.38 Total: 7.02 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 8.22 Total: 14.16 kcal Atomic # 7 Polarization: -102.94 SS G_CDS: -8.09 Total: -111.03 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.05 Total: -24.09 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.78 Total: -1.48 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.90 Total: 47.03 kcal Atomic # 16 Polarization: -8.80 SS G_CDS: -1.05 Total: -9.84 kcal Total: -80.33 2.10 -78.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112306841.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.234 kcal (2) G-P(sol) polarization free energy of solvation -80.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds