Wall clock time and date at job start Sat Apr 11 2020 05:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.00262 * 2 1 4 4 C 1.54383 * 109.84061 * 238.91055 * 2 1 3 5 5 H 1.08999 * 110.70275 * 144.38794 * 4 2 1 6 6 N 1.46497 * 110.75462 * 21.09891 * 4 2 1 7 7 C 1.39159 * 119.99632 * 160.02792 * 6 4 2 8 8 C 1.39204 * 120.06020 * 359.72935 * 7 6 4 9 9 N 1.32014 * 119.92954 * 179.73229 * 8 7 6 10 10 C 1.32398 * 120.05464 * 0.53357 * 9 8 7 11 11 F 1.35099 * 119.93998 * 179.69085 * 10 9 8 12 12 C 1.38470 * 120.12293 * 359.72060 * 10 9 8 13 13 N 1.32211 * 120.06905 * 0.02562 * 12 10 9 14 14 C 1.55158 * 102.91824 * 262.73010 * 4 2 1 15 15 C 1.54909 * 101.61642 * 324.54893 * 14 4 2 16 16 N 1.47016 * 109.88270 * 121.10658 * 2 1 3 17 17 C 1.34774 * 125.64624 * 300.50267 * 16 2 1 18 18 O 1.21282 * 120.00096 * 359.97438 * 17 16 2 19 19 C 1.50703 * 119.99909 * 179.97438 * 17 16 2 20 20 S 1.81002 * 109.47234 * 180.02562 * 19 17 16 21 21 C 1.76200 * 100.00249 * 179.97438 * 20 19 17 22 22 H 1.08004 * 119.99642 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00002 * 180.02562 * 21 20 19 24 24 N 1.31623 * 120.00006 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99836 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47389 * 59.99740 * 25 23 21 27 27 H 1.48498 * 109.47123 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47185 * 299.99795 * 25 23 21 29 29 H 1.09006 * 109.46696 * 300.35073 * 1 2 3 30 30 H 1.09000 * 109.47265 * 60.35000 * 1 2 3 31 31 H 1.08997 * 109.47641 * 180.35410 * 1 2 3 32 32 H 0.97001 * 120.00114 * 340.02774 * 6 4 2 33 33 H 1.08008 * 120.03769 * 359.97335 * 8 7 6 34 34 H 1.07999 * 119.96776 * 179.97438 * 12 10 9 35 35 H 1.09002 * 111.00366 * 206.45412 * 14 4 2 36 36 H 1.09002 * 111.00429 * 82.64474 * 14 4 2 37 37 H 1.09000 * 110.36449 * 155.82966 * 15 14 4 38 38 H 1.09002 * 110.36579 * 278.03887 * 15 14 4 39 39 H 1.09006 * 109.46865 * 299.99965 * 19 17 16 40 40 H 1.08994 * 109.47167 * 60.00324 * 19 17 16 41 41 H 0.97000 * 119.99990 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0540 -0.7499 -1.2436 5 1 2.9645 -0.2833 -1.6196 6 7 1.0280 -0.8037 -2.2879 7 6 1.3919 -1.0470 -3.6088 8 6 2.7310 -1.2338 -3.9401 9 7 3.0727 -1.4697 -5.1932 10 6 2.1443 -1.5182 -6.1359 11 9 2.4974 -1.7536 -7.4185 12 6 0.8122 -1.3275 -5.8097 13 7 0.4639 -1.0959 -4.5555 14 6 2.3517 -2.1695 -0.6927 15 6 2.8568 -1.8499 0.7364 16 7 2.0300 -0.7143 1.1837 17 6 1.7743 -0.3856 2.4655 18 8 1.0772 0.5742 2.7180 19 6 2.3547 -1.2107 3.5851 20 16 1.8333 -0.5215 5.1755 21 6 2.6300 -1.6468 6.2726 22 1 3.2227 -2.4583 5.8770 23 6 2.4959 -1.4901 7.6452 24 7 1.7739 -0.5008 8.1273 25 14 3.3411 -2.6827 8.8083 26 1 4.8083 -2.6373 8.5837 27 1 3.0437 -2.2999 10.2119 28 1 2.8438 -4.0587 8.5540 29 1 -0.3633 0.5193 0.8869 30 1 -0.3634 0.5084 -0.8931 31 1 -0.3634 -1.0276 0.0064 32 1 0.0950 -0.6698 -2.0586 33 1 3.4891 -1.1897 -3.1722 34 1 0.0570 -1.3671 -6.5807 35 1 3.1268 -2.6618 -1.2801 36 1 1.4454 -2.7742 -0.6608 37 1 2.7087 -2.7082 1.3918 38 1 3.9096 -1.5688 0.7127 39 1 2.0000 -2.2380 3.5009 40 1 3.4427 -1.1955 3.5214 41 1 1.6799 -0.3915 9.0865 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122940082.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:54 Heat of formation + Delta-G solvation = -4.920468 kcal Electronic energy + Delta-G solvation = -26136.289576 eV Core-core repulsion = 22093.033078 eV Total energy + Delta-G solvation = -4043.256498 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.30588 -41.58031 -40.36030 -38.02812 -35.71304 -34.56861 -32.47784 -32.11832 -31.30929 -29.72347 -28.32038 -26.43514 -25.53898 -25.30547 -23.88176 -23.18116 -21.00148 -19.30293 -19.02644 -18.46496 -17.85593 -17.79382 -16.77113 -16.65253 -16.38820 -15.81829 -15.36781 -15.15276 -14.84805 -14.80865 -14.45892 -14.24636 -14.09329 -13.94533 -13.61497 -13.33551 -12.90929 -12.74793 -12.61844 -12.46707 -12.15477 -12.12943 -11.87504 -11.80930 -11.45657 -11.21679 -11.08871 -11.07554 -10.81376 -10.60702 -9.87897 -9.74906 -9.48636 -9.10501 -8.71611 -8.35109 -8.30246 -6.56215 -6.26206 -3.97606 0.28323 0.61019 2.21631 2.80892 2.93860 3.05732 3.10944 3.20115 3.21563 3.25774 3.51061 3.73137 3.83997 3.93093 4.10720 4.16039 4.27768 4.45558 4.62427 4.70349 4.85430 4.88529 4.92161 5.07459 5.09007 5.17540 5.21887 5.38519 5.42207 5.54311 5.62796 5.72819 5.78530 5.82628 6.03720 6.07905 6.10239 6.32872 6.78178 6.79566 7.27857 7.49122 7.54745 8.30138 8.42568 9.19028 10.81109 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.033933 B = 0.001916 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.952178 B =14614.034114 C =15187.403750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.137 3.863 3 H 0.086 0.914 4 C 0.139 3.861 5 H 0.104 0.896 6 N -0.698 5.698 7 C 0.353 3.647 8 C 0.029 3.971 9 N -0.429 5.429 10 C 0.181 3.819 11 F -0.110 7.110 12 C 0.100 3.900 13 N -0.480 5.480 14 C -0.150 4.150 15 C 0.101 3.899 16 N -0.622 5.622 17 C 0.552 3.448 18 O -0.510 6.510 19 C -0.148 4.148 20 S -0.059 6.059 21 C -0.537 4.537 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.415 0.585 33 H 0.176 0.824 34 H 0.181 0.819 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.671 -3.333 -26.586 26.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.032 3.968 3 H 0.104 0.896 4 C 0.033 3.967 5 H 0.122 0.878 6 N -0.334 5.334 7 C 0.113 3.887 8 C -0.141 4.141 9 N -0.147 5.147 10 C 0.024 3.976 11 F -0.089 7.089 12 C -0.063 4.063 13 N -0.202 5.202 14 C -0.189 4.189 15 C -0.023 4.023 16 N -0.361 5.361 17 C 0.341 3.659 18 O -0.383 6.383 19 C -0.298 4.298 20 S 0.167 5.833 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.257 0.743 33 H 0.193 0.807 34 H 0.198 0.802 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.328 -1.775 -25.869 25.932 hybrid contribution 1.156 -1.971 0.230 2.296 sum 0.828 -3.745 -25.639 25.925 Atomic orbital electron populations 1.22173 0.94589 1.02816 1.03659 1.21479 0.95309 0.96293 0.83721 0.89589 1.22129 0.91084 0.96706 0.86819 0.87836 1.44826 1.10998 1.75806 1.01737 1.19383 0.90568 0.91737 0.86970 1.22977 0.94432 1.03952 0.92738 1.67580 1.37225 1.09122 1.00815 1.18784 0.90773 1.06980 0.81038 1.91625 1.93008 1.92095 1.32201 1.23296 0.94166 0.95101 0.93764 1.68026 1.35308 1.16956 0.99863 1.23355 1.03058 0.96615 0.95864 1.22288 0.95271 0.90038 0.94689 1.48531 1.52230 1.30750 1.04572 1.20046 0.79970 0.84750 0.81157 1.90705 1.37155 1.28032 1.82431 1.23520 1.03847 1.02508 0.99924 1.85407 1.67125 1.40226 0.90499 1.22807 1.36659 1.15935 0.93084 0.90957 1.24989 0.95214 0.95977 0.97355 1.69999 1.37217 1.29213 1.13788 0.86223 0.79669 0.80502 0.79109 1.19909 1.20788 1.19925 0.89489 0.91625 0.91999 0.74320 0.80721 0.80183 0.89221 0.89601 0.89679 0.90705 0.89262 0.89184 0.92079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 7.94 37.16 0.30 -1.42 16 2 C 0.14 1.30 3.48 -66.92 -0.23 1.07 16 3 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 4 C 0.14 0.87 2.74 -66.07 -0.18 0.69 16 5 H 0.10 0.49 6.65 -51.93 -0.35 0.14 16 6 N -0.70 -4.62 5.15 -52.00 -0.27 -4.89 16 7 C 0.35 2.73 7.67 -154.62 -1.19 1.55 16 8 C 0.03 0.21 10.40 -17.11 -0.18 0.04 16 9 N -0.43 -4.12 10.50 -13.24 -0.14 -4.25 16 10 C 0.18 1.61 8.43 -17.22 -0.15 1.46 16 11 F -0.11 -1.00 17.29 2.25 0.04 -0.96 16 12 C 0.10 0.72 11.20 -17.30 -0.19 0.53 16 13 N -0.48 -4.06 10.53 -12.17 -0.13 -4.19 16 14 C -0.15 -0.89 6.77 -24.58 -0.17 -1.06 16 15 C 0.10 0.83 6.69 -2.53 -0.02 0.82 16 16 N -0.62 -7.49 3.08 -162.99 -0.50 -7.99 16 17 C 0.55 9.60 7.65 -10.99 -0.08 9.52 16 18 O -0.51 -10.79 14.76 5.56 0.08 -10.70 16 19 C -0.15 -2.82 5.16 36.01 0.19 -2.63 16 20 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 21 C -0.54 -14.88 9.50 30.94 0.29 -14.58 16 22 H 0.07 1.89 7.80 -52.48 -0.41 1.48 16 23 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 24 N -0.87 -25.66 13.22 55.49 0.73 -24.93 16 25 Si 0.92 20.95 29.55 -169.99 -5.02 15.93 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 29 H 0.09 1.16 6.74 -51.93 -0.35 0.81 16 30 H 0.07 0.50 6.72 -51.93 -0.35 0.15 16 31 H 0.06 0.59 8.06 -51.93 -0.42 0.17 16 32 H 0.42 2.82 5.86 -40.82 -0.24 2.58 16 33 H 0.18 0.88 6.29 -52.48 -0.33 0.55 16 34 H 0.18 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.72 7.48 -51.93 -0.39 0.33 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 1.58 7.85 -51.91 -0.41 1.17 16 40 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 41 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 359.63 15.07 5.42 5.42 Total: -1.00 -34.47 359.63 -8.61 -43.08 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -4.91 Total: -0.70 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -1.71 Total: -2.05 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -0.30 Total: -46.25 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.08 Total: -10.70 kcal Atomic # 9 Polarization: -1.00 SS G_CDS: 0.04 Total: -0.96 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.47 -8.61 -43.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122940082.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.163 kcal (2) G-P(sol) polarization free energy of solvation -34.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds