Wall clock time and date at job start Sat Apr 11 2020 05:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.99531 * 2 1 4 4 C 1.54319 * 109.87999 * 121.09236 * 2 1 3 5 5 H 1.09004 * 110.71872 * 23.07519 * 4 2 1 6 6 N 1.46499 * 110.72215 * 259.97471 * 4 2 1 7 7 C 1.39151 * 119.99917 * 155.28000 * 6 4 2 8 8 C 1.39211 * 120.05895 * 359.44894 * 7 6 4 9 9 N 1.32017 * 119.92840 * 179.70971 * 8 7 6 10 10 C 1.32397 * 120.05320 * 0.56608 * 9 8 7 11 11 F 1.35102 * 119.93602 * 179.72947 * 10 9 8 12 12 C 1.38473 * 120.12468 * 359.71139 * 10 9 8 13 13 N 1.32211 * 120.06902 * 359.97438 * 12 10 9 14 14 C 1.55161 * 102.93767 * 141.60899 * 4 2 1 15 15 C 1.54900 * 101.58578 * 324.50104 * 14 4 2 16 16 N 1.47018 * 109.88230 * 238.90763 * 2 1 3 17 17 C 1.34772 * 125.65154 * 61.67714 * 16 2 1 18 18 O 1.21279 * 120.00243 * 0.02562 * 17 16 2 19 19 C 1.50705 * 120.00004 * 180.02562 * 17 16 2 20 20 S 1.80996 * 109.47205 * 180.02562 * 19 17 16 21 21 C 1.76205 * 99.99994 * 179.97438 * 20 19 17 22 22 H 1.07996 * 120.00008 * 359.97438 * 21 20 19 23 23 C 1.38801 * 119.99646 * 179.97438 * 21 20 19 24 24 N 1.31625 * 120.00410 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99646 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47328 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47239 * 120.00214 * 25 23 21 28 28 H 1.48505 * 109.47023 * 240.00372 * 25 23 21 29 29 H 1.08999 * 109.47271 * 298.90484 * 1 2 3 30 30 H 1.09011 * 109.47153 * 58.90451 * 1 2 3 31 31 H 1.09000 * 109.47440 * 178.90356 * 1 2 3 32 32 H 0.97001 * 119.99790 * 334.99734 * 6 4 2 33 33 H 1.07995 * 120.04009 * 0.02562 * 8 7 6 34 34 H 1.08001 * 119.96536 * 180.02562 * 12 10 9 35 35 H 1.09004 * 110.99938 * 82.57603 * 14 4 2 36 36 H 1.09002 * 111.00345 * 206.42438 * 14 4 2 37 37 H 1.09002 * 110.36989 * 278.16796 * 15 14 4 38 38 H 1.09002 * 110.46469 * 155.89134 * 15 14 4 39 39 H 1.09005 * 109.46958 * 300.00005 * 19 17 16 40 40 H 1.09000 * 109.47324 * 59.99627 * 19 17 16 41 41 H 0.97000 * 120.00263 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7494 1.2427 5 1 1.3038 -1.4436 1.6201 6 7 2.4553 0.1962 2.2875 7 6 2.4637 -0.2025 3.6207 8 6 2.0806 -1.4960 3.9641 9 7 2.0949 -1.8733 5.2291 10 6 2.4624 -1.0192 6.1716 11 9 2.4710 -1.4061 7.4660 12 6 2.8384 0.2699 5.8331 13 7 2.8318 0.6509 4.5671 14 6 3.2875 -1.5142 0.6924 15 6 2.8145 -1.8794 -0.7367 16 7 2.0300 -0.7140 -1.1839 17 6 1.8085 -0.3612 -2.4657 18 8 1.1459 0.6227 -2.7180 19 6 2.3843 -1.1893 -3.5854 20 16 1.9153 -0.4633 -5.1756 21 6 2.6988 -1.5976 -6.2729 22 1 3.2587 -2.4322 -5.8775 23 6 2.5964 -1.4185 -7.6455 24 7 1.9144 -0.4011 -8.1275 25 14 3.4276 -2.6207 -8.8088 26 1 4.1263 -3.6684 -8.0218 27 1 2.4050 -3.2553 -9.6786 28 1 4.4120 -1.8945 -9.6508 29 1 -0.3634 0.4967 0.8996 30 1 -0.3634 0.5308 -0.8801 31 1 -0.3634 -1.0275 -0.0197 32 1 2.7187 1.0989 2.0495 33 1 1.7768 -2.1918 3.1960 34 1 3.1382 0.9644 6.6040 35 1 4.1653 -0.8688 0.6604 36 1 3.4851 -2.4110 1.2796 37 1 2.1886 -2.7715 -0.7129 38 1 3.6705 -2.0349 -1.3934 39 1 3.4710 -1.2085 -3.5015 40 1 1.9971 -2.2062 -3.5215 41 1 1.8425 -0.2762 -9.0867 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122940083.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:57 Heat of formation + Delta-G solvation = -11.699601 kcal Electronic energy + Delta-G solvation = -26052.420873 eV Core-core repulsion = 22008.870410 eV Total energy + Delta-G solvation = -4043.550463 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -49.31567 -41.56678 -40.29521 -37.96442 -35.74737 -34.58012 -32.47972 -32.08752 -31.36365 -29.78296 -28.50282 -26.03275 -25.54933 -25.43194 -23.66046 -23.01424 -21.53748 -19.42669 -18.76924 -18.43505 -18.12411 -17.67571 -16.73673 -16.66310 -16.31956 -15.73175 -15.40458 -14.96662 -14.84975 -14.84367 -14.48414 -14.15122 -14.03821 -14.02591 -13.90434 -13.18810 -13.01645 -12.72604 -12.61988 -12.41117 -12.16700 -12.02510 -11.91515 -11.77088 -11.64118 -11.18043 -11.10708 -11.06484 -10.80308 -10.61749 -9.86056 -9.77010 -9.49007 -9.12214 -8.71054 -8.36397 -8.29456 -6.56251 -6.26741 -3.97868 0.26824 0.59660 2.17215 2.82822 2.94037 3.04376 3.09484 3.18073 3.21941 3.27426 3.51474 3.71493 3.82718 3.93459 4.08661 4.15576 4.25876 4.45817 4.61313 4.75178 4.81732 4.88498 4.92861 5.08656 5.08945 5.15760 5.34146 5.37603 5.50904 5.54339 5.61632 5.72044 5.79728 5.82196 6.04841 6.08754 6.11307 6.33474 6.75975 6.77897 7.26077 7.49499 7.55216 8.30358 8.42952 9.18845 10.80701 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.033987 B = 0.001899 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.654139 B =14739.525459 C =15196.699577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.136 3.864 3 H 0.081 0.919 4 C 0.139 3.861 5 H 0.106 0.894 6 N -0.696 5.696 7 C 0.355 3.645 8 C 0.029 3.971 9 N -0.429 5.429 10 C 0.182 3.818 11 F -0.110 7.110 12 C 0.100 3.900 13 N -0.479 5.479 14 C -0.150 4.150 15 C 0.101 3.899 16 N -0.623 5.623 17 C 0.552 3.448 18 O -0.510 6.510 19 C -0.147 4.147 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.413 0.587 33 H 0.176 0.824 34 H 0.181 0.819 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.292 -2.294 26.744 26.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.031 3.969 3 H 0.099 0.901 4 C 0.033 3.967 5 H 0.124 0.876 6 N -0.328 5.328 7 C 0.115 3.885 8 C -0.141 4.141 9 N -0.147 5.147 10 C 0.025 3.975 11 F -0.089 7.089 12 C -0.063 4.063 13 N -0.201 5.201 14 C -0.189 4.189 15 C -0.023 4.023 16 N -0.361 5.361 17 C 0.340 3.660 18 O -0.383 6.383 19 C -0.298 4.298 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.092 0.908 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.205 1.205 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.250 0.750 33 H 0.193 0.807 34 H 0.198 0.802 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.169 -0.837 26.039 26.079 hybrid contribution 1.461 -1.712 -0.256 2.265 sum 2.630 -2.549 25.783 26.042 Atomic orbital electron populations 1.22165 0.93777 1.02806 1.03467 1.21499 0.95261 0.96422 0.83690 0.90103 1.22239 0.96896 0.90874 0.86679 0.87603 1.44465 1.71562 1.16039 1.00778 1.19338 0.91736 0.90661 0.86744 1.22970 1.03855 0.94806 0.92447 1.67587 1.10680 1.35603 1.00837 1.18791 1.06189 0.91904 0.80629 1.91628 1.94345 1.91856 1.31070 1.23301 0.95693 0.93703 0.93615 1.68030 1.17814 1.34453 0.99775 1.23345 0.98272 1.01448 0.95868 1.22297 0.96085 0.89220 0.94660 1.48521 1.54226 1.28780 1.04571 1.20050 0.79702 0.85041 0.81173 1.90709 1.38402 1.26786 1.82410 1.23518 1.03685 1.02669 0.99906 1.85418 1.69740 1.37647 0.90533 1.22890 1.38333 1.14060 0.93066 0.90847 1.24997 0.95222 0.95988 0.97381 1.70020 1.38523 1.28041 1.13624 0.86114 0.79033 0.80229 0.80100 1.19598 1.20539 1.20547 0.91845 0.90181 0.92119 0.74958 0.80720 0.80159 0.89554 0.89196 0.90800 0.89626 0.89255 0.89180 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.09 37.16 0.34 -1.33 16 2 C 0.14 1.31 3.21 -66.96 -0.21 1.10 16 3 H 0.08 0.84 7.72 -51.93 -0.40 0.44 16 4 C 0.14 0.87 2.56 -66.10 -0.17 0.70 16 5 H 0.11 0.53 6.07 -51.93 -0.32 0.21 16 6 N -0.70 -4.47 5.36 -52.03 -0.28 -4.74 16 7 C 0.35 2.70 7.67 -154.63 -1.19 1.51 16 8 C 0.03 0.21 10.40 -17.11 -0.18 0.04 16 9 N -0.43 -4.09 10.50 -13.24 -0.14 -4.22 16 10 C 0.18 1.60 8.43 -17.22 -0.15 1.45 16 11 F -0.11 -0.99 17.29 2.25 0.04 -0.95 16 12 C 0.10 0.72 11.20 -17.30 -0.19 0.52 16 13 N -0.48 -4.00 10.53 -12.17 -0.13 -4.13 16 14 C -0.15 -0.89 6.77 -24.59 -0.17 -1.06 16 15 C 0.10 0.84 6.69 -2.53 -0.02 0.82 16 16 N -0.62 -7.55 3.06 -163.02 -0.50 -8.05 16 17 C 0.55 9.66 7.66 -10.99 -0.08 9.58 16 18 O -0.51 -10.88 14.92 5.56 0.08 -10.79 16 19 C -0.15 -2.82 5.16 36.01 0.19 -2.64 16 20 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 21 C -0.54 -14.85 9.50 30.94 0.29 -14.56 16 22 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 23 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 24 N -0.87 -25.68 13.22 55.49 0.73 -24.94 16 25 Si 0.92 20.98 29.55 -169.99 -5.02 15.95 16 26 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 1.09 6.91 -51.92 -0.36 0.73 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.41 2.63 8.49 -40.82 -0.35 2.28 16 33 H 0.18 0.88 6.18 -52.49 -0.32 0.56 16 34 H 0.18 0.72 8.06 -52.49 -0.42 0.29 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.73 7.47 -51.93 -0.39 0.34 16 39 H 0.09 1.58 7.84 -51.91 -0.41 1.18 16 40 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 41 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 363.87 15.07 5.48 5.48 Total: -1.00 -34.64 363.87 -8.62 -43.26 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -5.04 Total: -1.17 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -1.63 Total: -1.90 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: -0.31 Total: -46.09 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.08 Total: -10.79 kcal Atomic # 9 Polarization: -0.99 SS G_CDS: 0.04 Total: -0.95 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.64 -8.62 -43.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122940083.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.556 kcal (2) G-P(sol) polarization free energy of solvation -34.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds