Wall clock time and date at job start Sat Apr 11 2020 05:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.99531 * 2 1 4 4 C 1.54319 * 109.87999 * 121.09236 * 2 1 3 5 5 H 1.09004 * 110.71872 * 23.07519 * 4 2 1 6 6 N 1.46499 * 110.72215 * 259.97471 * 4 2 1 7 7 C 1.39151 * 119.99917 * 155.28000 * 6 4 2 8 8 C 1.39211 * 120.05895 * 359.44894 * 7 6 4 9 9 N 1.32017 * 119.92840 * 179.70971 * 8 7 6 10 10 C 1.32397 * 120.05320 * 0.56608 * 9 8 7 11 11 F 1.35102 * 119.93602 * 179.72947 * 10 9 8 12 12 C 1.38473 * 120.12468 * 359.71139 * 10 9 8 13 13 N 1.32211 * 120.06902 * 359.97438 * 12 10 9 14 14 C 1.55161 * 102.93767 * 141.60899 * 4 2 1 15 15 C 1.54900 * 101.58578 * 324.50104 * 14 4 2 16 16 N 1.47018 * 109.88230 * 238.90763 * 2 1 3 17 17 C 1.34772 * 125.65154 * 61.67714 * 16 2 1 18 18 O 1.21279 * 120.00243 * 0.02562 * 17 16 2 19 19 C 1.50705 * 120.00004 * 180.02562 * 17 16 2 20 20 S 1.80996 * 109.47205 * 180.02562 * 19 17 16 21 21 C 1.76205 * 99.99994 * 179.97438 * 20 19 17 22 22 H 1.07996 * 120.00008 * 359.97438 * 21 20 19 23 23 C 1.38801 * 119.99646 * 179.97438 * 21 20 19 24 24 N 1.31625 * 120.00410 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99646 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47328 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47239 * 120.00214 * 25 23 21 28 28 H 1.48505 * 109.47023 * 240.00372 * 25 23 21 29 29 H 1.08999 * 109.47271 * 298.90484 * 1 2 3 30 30 H 1.09011 * 109.47153 * 58.90451 * 1 2 3 31 31 H 1.09000 * 109.47440 * 178.90356 * 1 2 3 32 32 H 0.97001 * 119.99790 * 334.99734 * 6 4 2 33 33 H 1.07995 * 120.04009 * 0.02562 * 8 7 6 34 34 H 1.08001 * 119.96536 * 180.02562 * 12 10 9 35 35 H 1.09004 * 110.99938 * 82.57603 * 14 4 2 36 36 H 1.09002 * 111.00345 * 206.42438 * 14 4 2 37 37 H 1.09002 * 110.36989 * 278.16796 * 15 14 4 38 38 H 1.09002 * 110.46469 * 155.89134 * 15 14 4 39 39 H 1.09005 * 109.46958 * 300.00005 * 19 17 16 40 40 H 1.09000 * 109.47324 * 59.99627 * 19 17 16 41 41 H 0.97000 * 120.00263 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7494 1.2427 5 1 1.3038 -1.4436 1.6201 6 7 2.4553 0.1962 2.2875 7 6 2.4637 -0.2025 3.6207 8 6 2.0806 -1.4960 3.9641 9 7 2.0949 -1.8733 5.2291 10 6 2.4624 -1.0192 6.1716 11 9 2.4710 -1.4061 7.4660 12 6 2.8384 0.2699 5.8331 13 7 2.8318 0.6509 4.5671 14 6 3.2875 -1.5142 0.6924 15 6 2.8145 -1.8794 -0.7367 16 7 2.0300 -0.7140 -1.1839 17 6 1.8085 -0.3612 -2.4657 18 8 1.1459 0.6227 -2.7180 19 6 2.3843 -1.1893 -3.5854 20 16 1.9153 -0.4633 -5.1756 21 6 2.6988 -1.5976 -6.2729 22 1 3.2587 -2.4322 -5.8775 23 6 2.5964 -1.4185 -7.6455 24 7 1.9144 -0.4011 -8.1275 25 14 3.4276 -2.6207 -8.8088 26 1 4.1263 -3.6684 -8.0218 27 1 2.4050 -3.2553 -9.6786 28 1 4.4120 -1.8945 -9.6508 29 1 -0.3634 0.4967 0.8996 30 1 -0.3634 0.5308 -0.8801 31 1 -0.3634 -1.0275 -0.0197 32 1 2.7187 1.0989 2.0495 33 1 1.7768 -2.1918 3.1960 34 1 3.1382 0.9644 6.6040 35 1 4.1653 -0.8688 0.6604 36 1 3.4851 -2.4110 1.2796 37 1 2.1886 -2.7715 -0.7129 38 1 3.6705 -2.0349 -1.3934 39 1 3.4710 -1.2085 -3.5015 40 1 1.9971 -2.2062 -3.5215 41 1 1.8425 -0.2762 -9.0867 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122940083.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:56 Heat of formation + Delta-G solvation = -36.258381 kcal Electronic energy + Delta-G solvation = -26053.485822 eV Core-core repulsion = 22008.870410 eV Total energy + Delta-G solvation = -4044.615412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.93899 -42.15104 -41.25716 -39.03935 -36.49737 -35.20426 -34.58691 -33.02049 -32.13821 -30.66356 -29.60917 -27.65972 -26.67783 -26.06270 -24.26234 -23.93852 -22.18272 -20.56193 -19.57222 -19.41170 -19.03348 -18.72263 -17.85349 -17.27698 -17.22102 -16.88354 -16.63079 -16.31509 -15.92317 -15.74100 -15.42907 -15.19931 -14.99089 -14.74059 -14.58006 -14.47789 -14.06724 -13.95611 -13.62770 -13.31794 -13.15252 -13.01065 -12.91352 -12.77222 -12.74983 -12.59229 -12.46243 -12.26914 -11.85551 -11.70523 -11.19866 -11.16033 -10.88512 -10.33489 -10.26750 -9.74173 -8.91140 -8.67140 -8.35027 -6.12969 -0.26568 0.00645 1.20843 1.41435 1.41929 1.54501 1.58201 1.70253 2.16322 2.27290 2.48788 2.53447 2.99484 3.13547 3.19795 3.31916 3.40293 3.49466 3.68921 3.86141 3.89348 4.09943 4.15313 4.20266 4.27052 4.28791 4.44993 4.46673 4.53946 4.64391 4.77464 4.91097 4.97704 5.09138 5.21530 5.24975 5.40354 5.42257 5.57297 6.19841 6.20725 6.22576 6.36517 6.71095 7.06669 7.13160 8.74324 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.033987 B = 0.001899 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.654139 B =14739.525459 C =15196.699577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.131 3.869 3 H 0.070 0.930 4 C 0.153 3.847 5 H 0.130 0.870 6 N -0.690 5.690 7 C 0.355 3.645 8 C 0.031 3.969 9 N -0.453 5.453 10 C 0.163 3.837 11 F -0.117 7.117 12 C 0.107 3.893 13 N -0.497 5.497 14 C -0.138 4.138 15 C 0.089 3.911 16 N -0.612 5.612 17 C 0.550 3.450 18 O -0.560 6.560 19 C -0.121 4.121 20 S -0.152 6.152 21 C -0.544 4.544 22 H 0.084 0.916 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.998 3.002 26 H -0.255 1.255 27 H -0.275 1.275 28 H -0.275 1.275 29 H 0.083 0.917 30 H 0.038 0.962 31 H 0.070 0.930 32 H 0.413 0.587 33 H 0.201 0.799 34 H 0.208 0.792 35 H 0.082 0.918 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.623 -4.540 28.439 29.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.027 3.973 3 H 0.088 0.912 4 C 0.047 3.953 5 H 0.148 0.852 6 N -0.322 5.322 7 C 0.115 3.885 8 C -0.138 4.138 9 N -0.172 5.172 10 C 0.007 3.993 11 F -0.096 7.096 12 C -0.055 4.055 13 N -0.220 5.220 14 C -0.177 4.177 15 C -0.033 4.033 16 N -0.348 5.348 17 C 0.338 3.662 18 O -0.438 6.438 19 C -0.272 4.272 20 S 0.075 5.925 21 C -0.691 4.691 22 H 0.102 0.898 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.820 3.180 26 H -0.179 1.179 27 H -0.200 1.200 28 H -0.201 1.201 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.251 0.749 33 H 0.218 0.782 34 H 0.225 0.775 35 H 0.100 0.900 36 H 0.139 0.861 37 H 0.115 0.885 38 H 0.105 0.895 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.525 -3.111 27.804 28.091 hybrid contribution 1.041 -0.993 -0.649 1.579 sum 3.566 -4.104 27.155 27.694 Atomic orbital electron populations 1.22099 0.94076 1.03065 1.02478 1.21654 0.95059 0.96394 0.84171 0.91152 1.22160 0.97634 0.90398 0.85081 0.85212 1.44417 1.71204 1.16109 1.00460 1.19429 0.91458 0.90807 0.86810 1.23335 1.03150 0.95058 0.92297 1.67568 1.11433 1.36442 1.01714 1.18988 1.07318 0.92616 0.80414 1.91603 1.94510 1.91986 1.31532 1.23653 0.94525 0.93497 0.93815 1.68068 1.18599 1.34992 1.00306 1.23333 0.97544 1.02498 0.94327 1.22693 0.96119 0.88371 0.96075 1.48382 1.53269 1.29692 1.03418 1.19709 0.79526 0.84331 0.82660 1.90694 1.40799 1.28818 1.83526 1.23316 1.04704 1.02986 0.96163 1.85603 1.70913 1.40007 0.95962 1.23225 1.38186 1.14116 0.93621 0.89817 1.26123 0.95775 0.97914 0.99382 1.70185 1.40247 1.30266 1.14097 0.84915 0.77881 0.77770 0.77450 1.17866 1.20011 1.20059 0.89851 0.94258 0.91061 0.74912 0.78216 0.77538 0.89965 0.86129 0.88536 0.89513 0.87551 0.87350 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 9.09 71.98 0.65 -2.41 16 2 C 0.13 2.31 3.21 45.34 0.15 2.46 16 3 H 0.07 1.42 7.72 -2.39 -0.02 1.40 16 4 C 0.15 1.38 2.56 46.18 0.12 1.49 16 5 H 0.13 0.65 6.07 -2.39 -0.01 0.63 16 6 N -0.69 -6.87 5.36 -318.54 -1.71 -8.58 16 7 C 0.36 4.42 7.67 132.96 1.02 5.44 16 8 C 0.03 0.37 10.40 84.90 0.88 1.25 16 9 N -0.45 -7.71 10.50 -195.81 -2.06 -9.76 16 10 C 0.16 2.62 8.43 84.66 0.71 3.33 16 11 F -0.12 -2.01 17.29 44.97 0.78 -1.23 16 12 C 0.11 1.34 11.20 84.69 0.95 2.29 16 13 N -0.50 -7.24 10.53 -192.40 -2.03 -9.27 16 14 C -0.14 -1.06 6.77 31.98 0.22 -0.85 16 15 C 0.09 1.18 6.69 86.85 0.58 1.76 16 16 N -0.61 -13.88 3.06 -788.07 -2.42 -16.30 16 17 C 0.55 19.29 7.66 87.66 0.67 19.96 16 18 O -0.56 -24.97 14.92 -3.03 -0.05 -25.01 16 19 C -0.12 -4.58 5.16 71.24 0.37 -4.21 16 20 S -0.15 -8.26 20.57 -56.49 -1.16 -9.42 16 21 C -0.54 -30.37 9.50 67.95 0.65 -29.72 16 22 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 23 C 0.01 0.71 5.49 84.86 0.47 1.18 16 24 N -0.91 -55.35 13.22 21.65 0.29 -55.06 16 25 Si 1.00 42.80 29.55 68.60 2.03 44.83 16 26 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 27 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 28 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 29 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.04 1.10 6.91 -2.38 -0.02 1.08 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.41 4.38 8.49 -92.71 -0.79 3.59 16 33 H 0.20 1.11 6.18 -2.91 -0.02 1.09 16 34 H 0.21 1.20 8.06 -2.91 -0.02 1.18 16 35 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.09 1.18 7.47 -2.39 -0.02 1.16 16 39 H 0.11 3.64 7.84 -2.39 -0.02 3.62 16 40 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 41 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -79.63 363.87 1.41 -78.22 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 0.30 Total: 9.61 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 7.43 Total: 1.97 kcal Atomic # 7 Polarization: -91.05 SS G_CDS: -7.92 Total: -98.97 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.05 Total: -25.01 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.78 Total: -1.23 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: -8.26 SS G_CDS: -1.16 Total: -9.42 kcal Total: -79.63 1.41 -78.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122940083.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.966 kcal (2) G-P(sol) polarization free energy of solvation -79.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds