Wall clock time and date at job start Sat Apr 11 2020 05:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.87314 * 2 1 4 4 C 1.54321 * 109.88460 * 238.98041 * 2 1 3 5 5 H 1.09000 * 110.72083 * 336.93490 * 4 2 1 6 6 N 1.46503 * 110.72097 * 100.02739 * 4 2 1 7 7 C 1.39149 * 120.00278 * 205.00187 * 6 4 2 8 8 C 1.39211 * 120.06003 * 0.02562 * 7 6 4 9 9 N 1.32011 * 119.93071 * 180.02562 * 8 7 6 10 10 C 1.32397 * 120.05719 * 359.97438 * 9 8 7 11 11 F 1.35099 * 119.93878 * 180.02562 * 10 9 8 12 12 C 1.38471 * 120.12192 * 0.02967 * 10 9 8 13 13 N 1.32216 * 120.07167 * 359.67229 * 12 10 9 14 14 C 1.55156 * 102.94525 * 218.38973 * 4 2 1 15 15 C 1.54908 * 101.58059 * 35.49939 * 14 4 2 16 16 N 1.47023 * 109.88243 * 121.01165 * 2 1 3 17 17 C 1.34779 * 125.65034 * 298.31362 * 16 2 1 18 18 O 1.21276 * 119.99739 * 0.02562 * 17 16 2 19 19 C 1.50696 * 119.99980 * 179.97438 * 17 16 2 20 20 S 1.81000 * 109.47149 * 180.02562 * 19 17 16 21 21 C 1.76205 * 100.00132 * 180.02562 * 20 19 17 22 22 H 1.07997 * 119.99595 * 359.97438 * 21 20 19 23 23 C 1.38792 * 119.99838 * 179.97438 * 21 20 19 24 24 N 1.31632 * 120.00189 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99983 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46836 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47549 * 119.99821 * 25 23 21 28 28 H 1.48503 * 109.47228 * 239.99920 * 25 23 21 29 29 H 1.09002 * 109.47153 * 180.70181 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.70372 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.70353 * 1 2 3 32 32 H 0.97003 * 119.99841 * 24.99985 * 6 4 2 33 33 H 1.07998 * 120.03408 * 0.02562 * 8 7 6 34 34 H 1.08004 * 119.96645 * 180.02562 * 12 10 9 35 35 H 1.08996 * 111.00473 * 153.57524 * 14 4 2 36 36 H 1.09007 * 111.00446 * 277.43231 * 14 4 2 37 37 H 1.09001 * 110.36802 * 81.82899 * 15 14 4 38 38 H 1.08999 * 110.36661 * 204.04152 * 15 14 4 39 39 H 1.09008 * 109.47072 * 300.00157 * 19 17 16 40 40 H 1.08999 * 109.47528 * 60.00349 * 19 17 16 41 41 H 0.97000 * 119.99982 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7479 -1.2437 5 1 1.3040 -1.4414 -1.6221 6 7 2.4555 0.1991 -2.2872 7 6 2.4584 -0.1959 -3.6214 8 6 2.0802 -1.4906 -3.9662 9 7 2.0843 -1.8628 -5.2327 10 6 2.4471 -1.0059 -6.1745 11 9 2.4500 -1.3892 -7.4700 12 6 2.8238 0.2824 -5.8342 13 7 2.8159 0.6623 -4.5678 14 6 3.2876 -1.5133 -0.6944 15 6 2.8146 -1.8803 0.7343 16 7 2.0300 -0.7123 1.1850 17 6 1.8087 -0.3576 2.4663 18 8 1.1454 0.6263 2.7171 19 6 2.3844 -1.1841 3.5871 20 16 1.9142 -0.4564 5.1763 21 6 2.6979 -1.5891 6.2753 22 1 3.2577 -2.4243 5.8810 23 6 2.5957 -1.4079 7.6476 24 7 1.9138 -0.3897 8.1280 25 14 3.4271 -2.6083 8.8126 26 1 4.1257 -3.6572 8.0271 27 1 4.4115 -1.8809 9.6534 28 1 2.4045 -3.2415 9.6836 29 1 -0.3633 -1.0276 0.0126 30 1 -0.3633 0.5029 -0.8963 31 1 -0.3634 0.5247 0.8836 32 1 2.7188 1.1016 -2.0480 33 1 1.7837 -2.1897 -3.1983 34 1 3.1190 0.9795 -6.6046 35 1 3.4852 -2.4093 -1.2828 36 1 4.1655 -0.8679 -0.6614 37 1 2.1886 -2.7724 0.7092 38 1 3.6717 -2.0375 1.3890 39 1 1.9969 -2.2011 3.5247 40 1 3.4709 -1.2035 3.5033 41 1 1.8426 -0.2629 9.0871 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122940084.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:01 Heat of formation + Delta-G solvation = -11.610655 kcal Electronic energy + Delta-G solvation = -26049.657681 eV Core-core repulsion = 22006.111074 eV Total energy + Delta-G solvation = -4043.546606 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -49.31639 -41.56514 -40.27867 -37.96464 -35.74037 -34.57708 -32.47890 -32.07536 -31.36803 -29.78374 -28.50109 -26.03313 -25.54908 -25.43123 -23.65795 -23.01497 -21.53220 -19.42597 -18.76810 -18.43486 -18.12399 -17.67576 -16.73367 -16.66246 -16.31375 -15.73208 -15.40146 -14.96392 -14.84959 -14.84388 -14.48617 -14.15167 -14.03769 -14.02501 -13.90377 -13.18604 -13.01469 -12.72495 -12.61963 -12.41191 -12.16649 -12.02359 -11.91209 -11.76901 -11.64149 -11.17944 -11.10686 -11.06450 -10.80277 -10.61686 -9.86049 -9.77014 -9.49017 -9.12193 -8.71210 -8.36393 -8.29449 -6.56215 -6.26720 -3.97876 0.26842 0.59657 2.17172 2.82470 2.94166 3.04370 3.09489 3.18074 3.21870 3.27424 3.51335 3.71504 3.82751 3.93423 4.08567 4.15578 4.25863 4.45806 4.61306 4.75188 4.81747 4.88409 4.92644 5.08696 5.09138 5.15725 5.34144 5.37562 5.50848 5.54212 5.61598 5.72019 5.79742 5.82208 6.04848 6.08793 6.11212 6.33204 6.75973 6.77908 7.26068 7.49485 7.55225 8.30384 8.43024 9.18872 10.80721 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.034112 B = 0.001898 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.627636 B =14749.984192 C =15204.529872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.136 3.864 3 H 0.081 0.919 4 C 0.140 3.860 5 H 0.106 0.894 6 N -0.696 5.696 7 C 0.355 3.645 8 C 0.029 3.971 9 N -0.429 5.429 10 C 0.182 3.818 11 F -0.110 7.110 12 C 0.100 3.900 13 N -0.479 5.479 14 C -0.150 4.150 15 C 0.101 3.899 16 N -0.623 5.623 17 C 0.552 3.448 18 O -0.510 6.510 19 C -0.147 4.147 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.413 0.587 33 H 0.176 0.824 34 H 0.181 0.819 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.317 -2.335 -26.748 26.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.031 3.969 3 H 0.099 0.901 4 C 0.033 3.967 5 H 0.124 0.876 6 N -0.328 5.328 7 C 0.115 3.885 8 C -0.141 4.141 9 N -0.147 5.147 10 C 0.025 3.975 11 F -0.089 7.089 12 C -0.063 4.063 13 N -0.201 5.201 14 C -0.189 4.189 15 C -0.022 4.022 16 N -0.361 5.361 17 C 0.341 3.659 18 O -0.383 6.383 19 C -0.298 4.298 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.092 0.908 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.205 1.205 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.250 0.750 33 H 0.193 0.807 34 H 0.198 0.802 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.184 -0.875 -26.045 26.086 hybrid contribution 1.457 -1.707 0.259 2.259 sum 2.641 -2.582 -25.786 26.049 Atomic orbital electron populations 1.22167 0.93802 1.02774 1.03488 1.21495 0.95254 0.96447 0.83720 0.90126 1.22236 0.96895 0.90839 0.86695 0.87606 1.44468 1.71542 1.16108 1.00724 1.19340 0.91767 0.90645 0.86732 1.22969 1.03875 0.94834 0.92398 1.67584 1.10704 1.35576 1.00847 1.18788 1.06179 0.91946 0.80597 1.91627 1.94345 1.91958 1.30969 1.23303 0.95676 0.93726 0.93612 1.68036 1.17861 1.34387 0.99786 1.23344 0.98270 1.01443 0.95869 1.22349 0.96093 0.89174 0.94627 1.48594 1.54262 1.28741 1.04542 1.20042 0.79699 0.85020 0.81163 1.90708 1.38386 1.26787 1.82432 1.23516 1.03685 1.02689 0.99883 1.85419 1.69676 1.37701 0.90547 1.22889 1.38331 1.14055 0.93064 0.90847 1.24996 0.95221 0.95987 0.97387 1.70024 1.38531 1.27991 1.13669 0.86113 0.79031 0.80223 0.80105 1.19598 1.20547 1.20539 0.92134 0.91857 0.90175 0.74958 0.80720 0.80160 0.89182 0.89546 0.90755 0.89626 0.89182 0.89255 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.10 37.16 0.34 -1.33 16 2 C 0.14 1.31 3.20 -66.96 -0.21 1.09 16 3 H 0.08 0.84 7.71 -51.93 -0.40 0.44 16 4 C 0.14 0.87 2.56 -66.10 -0.17 0.70 16 5 H 0.11 0.53 6.07 -51.93 -0.32 0.21 16 6 N -0.70 -4.47 5.36 -52.03 -0.28 -4.75 16 7 C 0.35 2.70 7.67 -154.63 -1.19 1.51 16 8 C 0.03 0.21 10.40 -17.11 -0.18 0.04 16 9 N -0.43 -4.08 10.50 -13.24 -0.14 -4.22 16 10 C 0.18 1.60 8.43 -17.22 -0.15 1.45 16 11 F -0.11 -0.99 17.29 2.25 0.04 -0.95 16 12 C 0.10 0.72 11.20 -17.30 -0.19 0.52 16 13 N -0.48 -4.00 10.53 -12.16 -0.13 -4.13 16 14 C -0.15 -0.89 6.77 -24.58 -0.17 -1.05 16 15 C 0.10 0.84 6.71 -2.35 -0.02 0.82 16 16 N -0.62 -7.56 3.07 -162.76 -0.50 -8.06 16 17 C 0.55 9.67 7.66 -10.99 -0.08 9.59 16 18 O -0.51 -10.88 14.91 5.56 0.08 -10.80 16 19 C -0.15 -2.82 5.18 36.00 0.19 -2.63 16 20 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 21 C -0.54 -14.85 9.50 30.94 0.29 -14.56 16 22 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 23 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 24 N -0.87 -25.68 13.22 55.49 0.73 -24.95 16 25 Si 0.92 20.98 29.55 -169.99 -5.02 15.95 16 26 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 1.09 6.89 -51.93 -0.36 0.73 16 32 H 0.41 2.63 8.49 -40.82 -0.35 2.28 16 33 H 0.18 0.88 6.19 -52.49 -0.32 0.56 16 34 H 0.18 0.72 8.06 -52.48 -0.42 0.29 16 35 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.72 7.50 -51.93 -0.39 0.33 16 39 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 40 H 0.09 1.58 7.86 -51.92 -0.41 1.17 16 41 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 363.94 15.07 5.48 5.48 Total: -1.00 -34.65 363.94 -8.62 -43.27 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -5.05 Total: -1.17 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -1.63 Total: -1.89 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: -0.31 Total: -46.11 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.08 Total: -10.80 kcal Atomic # 9 Polarization: -0.99 SS G_CDS: 0.04 Total: -0.95 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.65 -8.62 -43.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122940084.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.658 kcal (2) G-P(sol) polarization free energy of solvation -34.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds