Wall clock time and date at job start Sat Apr 11 2020 05:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.87314 * 2 1 4 4 C 1.54321 * 109.88460 * 238.98041 * 2 1 3 5 5 H 1.09000 * 110.72083 * 336.93490 * 4 2 1 6 6 N 1.46503 * 110.72097 * 100.02739 * 4 2 1 7 7 C 1.39149 * 120.00278 * 205.00187 * 6 4 2 8 8 C 1.39211 * 120.06003 * 0.02562 * 7 6 4 9 9 N 1.32011 * 119.93071 * 180.02562 * 8 7 6 10 10 C 1.32397 * 120.05719 * 359.97438 * 9 8 7 11 11 F 1.35099 * 119.93878 * 180.02562 * 10 9 8 12 12 C 1.38471 * 120.12192 * 0.02967 * 10 9 8 13 13 N 1.32216 * 120.07167 * 359.67229 * 12 10 9 14 14 C 1.55156 * 102.94525 * 218.38973 * 4 2 1 15 15 C 1.54908 * 101.58059 * 35.49939 * 14 4 2 16 16 N 1.47023 * 109.88243 * 121.01165 * 2 1 3 17 17 C 1.34779 * 125.65034 * 298.31362 * 16 2 1 18 18 O 1.21276 * 119.99739 * 0.02562 * 17 16 2 19 19 C 1.50696 * 119.99980 * 179.97438 * 17 16 2 20 20 S 1.81000 * 109.47149 * 180.02562 * 19 17 16 21 21 C 1.76205 * 100.00132 * 180.02562 * 20 19 17 22 22 H 1.07997 * 119.99595 * 359.97438 * 21 20 19 23 23 C 1.38792 * 119.99838 * 179.97438 * 21 20 19 24 24 N 1.31632 * 120.00189 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99983 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46836 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47549 * 119.99821 * 25 23 21 28 28 H 1.48503 * 109.47228 * 239.99920 * 25 23 21 29 29 H 1.09002 * 109.47153 * 180.70181 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.70372 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.70353 * 1 2 3 32 32 H 0.97003 * 119.99841 * 24.99985 * 6 4 2 33 33 H 1.07998 * 120.03408 * 0.02562 * 8 7 6 34 34 H 1.08004 * 119.96645 * 180.02562 * 12 10 9 35 35 H 1.08996 * 111.00473 * 153.57524 * 14 4 2 36 36 H 1.09007 * 111.00446 * 277.43231 * 14 4 2 37 37 H 1.09001 * 110.36802 * 81.82899 * 15 14 4 38 38 H 1.08999 * 110.36661 * 204.04152 * 15 14 4 39 39 H 1.09008 * 109.47072 * 300.00157 * 19 17 16 40 40 H 1.08999 * 109.47528 * 60.00349 * 19 17 16 41 41 H 0.97000 * 119.99982 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7479 -1.2437 5 1 1.3040 -1.4414 -1.6221 6 7 2.4555 0.1991 -2.2872 7 6 2.4584 -0.1959 -3.6214 8 6 2.0802 -1.4906 -3.9662 9 7 2.0843 -1.8628 -5.2327 10 6 2.4471 -1.0059 -6.1745 11 9 2.4500 -1.3892 -7.4700 12 6 2.8238 0.2824 -5.8342 13 7 2.8159 0.6623 -4.5678 14 6 3.2876 -1.5133 -0.6944 15 6 2.8146 -1.8803 0.7343 16 7 2.0300 -0.7123 1.1850 17 6 1.8087 -0.3576 2.4663 18 8 1.1454 0.6263 2.7171 19 6 2.3844 -1.1841 3.5871 20 16 1.9142 -0.4564 5.1763 21 6 2.6979 -1.5891 6.2753 22 1 3.2577 -2.4243 5.8810 23 6 2.5957 -1.4079 7.6476 24 7 1.9138 -0.3897 8.1280 25 14 3.4271 -2.6083 8.8126 26 1 4.1257 -3.6572 8.0271 27 1 4.4115 -1.8809 9.6534 28 1 2.4045 -3.2415 9.6836 29 1 -0.3633 -1.0276 0.0126 30 1 -0.3633 0.5029 -0.8963 31 1 -0.3634 0.5247 0.8836 32 1 2.7188 1.1016 -2.0480 33 1 1.7837 -2.1897 -3.1983 34 1 3.1190 0.9795 -6.6046 35 1 3.4852 -2.4093 -1.2828 36 1 4.1655 -0.8679 -0.6614 37 1 2.1886 -2.7724 0.7092 38 1 3.6717 -2.0375 1.3890 39 1 1.9969 -2.2011 3.5247 40 1 3.4709 -1.2035 3.5033 41 1 1.8426 -0.2629 9.0871 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122940084.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:00 Heat of formation + Delta-G solvation = -36.194102 kcal Electronic energy + Delta-G solvation = -26050.723699 eV Core-core repulsion = 22006.111074 eV Total energy + Delta-G solvation = -4044.612625 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -49.93965 -42.14843 -41.24216 -39.03787 -36.48913 -35.20141 -34.58617 -33.00982 -32.14252 -30.66324 -29.60797 -27.66002 -26.67739 -26.06144 -24.25933 -23.93815 -22.17682 -20.56174 -19.57170 -19.41077 -19.03321 -18.72217 -17.85068 -17.27636 -17.21436 -16.88323 -16.63070 -16.31289 -15.92328 -15.74028 -15.42886 -15.19794 -14.99250 -14.73910 -14.57969 -14.47821 -14.06280 -13.95419 -13.62724 -13.31685 -13.15229 -13.00912 -12.91302 -12.76854 -12.75156 -12.59162 -12.45921 -12.26852 -11.85428 -11.70527 -11.19736 -11.16018 -10.88561 -10.33482 -10.26747 -9.74362 -8.91141 -8.67123 -8.35017 -6.12992 -0.26541 0.00654 1.20762 1.41442 1.41894 1.54509 1.58332 1.70265 2.16002 2.27290 2.48794 2.53464 2.99492 3.13488 3.19825 3.31908 3.40304 3.49487 3.68925 3.86070 3.89280 4.09967 4.15485 4.20441 4.27104 4.29000 4.45005 4.46724 4.53836 4.64237 4.77554 4.91072 4.97868 5.09290 5.21402 5.24939 5.40051 5.42252 5.57302 6.19860 6.20711 6.22599 6.36462 6.71089 7.06688 7.13207 8.74334 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.034112 B = 0.001898 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.627636 B =14749.984192 C =15204.529872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.131 3.869 3 H 0.070 0.930 4 C 0.154 3.846 5 H 0.130 0.870 6 N -0.690 5.690 7 C 0.355 3.645 8 C 0.031 3.969 9 N -0.453 5.453 10 C 0.163 3.837 11 F -0.117 7.117 12 C 0.107 3.893 13 N -0.497 5.497 14 C -0.138 4.138 15 C 0.090 3.910 16 N -0.613 5.613 17 C 0.550 3.450 18 O -0.561 6.561 19 C -0.121 4.121 20 S -0.152 6.152 21 C -0.544 4.544 22 H 0.084 0.916 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.998 3.002 26 H -0.255 1.255 27 H -0.275 1.275 28 H -0.275 1.275 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.038 0.962 32 H 0.413 0.587 33 H 0.201 0.799 34 H 0.208 0.792 35 H 0.121 0.879 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.658 -4.594 -28.442 29.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.027 3.973 3 H 0.088 0.912 4 C 0.047 3.953 5 H 0.148 0.852 6 N -0.322 5.322 7 C 0.115 3.885 8 C -0.138 4.138 9 N -0.172 5.172 10 C 0.007 3.993 11 F -0.096 7.096 12 C -0.055 4.055 13 N -0.220 5.220 14 C -0.177 4.177 15 C -0.032 4.032 16 N -0.348 5.348 17 C 0.338 3.662 18 O -0.439 6.439 19 C -0.272 4.272 20 S 0.075 5.925 21 C -0.691 4.691 22 H 0.102 0.898 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.820 3.180 26 H -0.179 1.179 27 H -0.201 1.201 28 H -0.200 1.200 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.251 0.749 33 H 0.218 0.782 34 H 0.225 0.775 35 H 0.139 0.861 36 H 0.100 0.900 37 H 0.115 0.885 38 H 0.105 0.895 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.549 -3.163 -27.808 28.103 hybrid contribution 1.035 -0.984 0.651 1.569 sum 3.584 -4.147 -27.158 27.705 Atomic orbital electron populations 1.22101 0.94112 1.03069 1.02454 1.21650 0.95043 0.96412 0.84211 0.91195 1.22157 0.97646 0.90364 0.85085 0.85218 1.44421 1.71182 1.16179 1.00408 1.19433 0.91488 0.90795 0.86798 1.23336 1.03156 0.95093 0.92249 1.67564 1.11457 1.36412 1.01725 1.18984 1.07309 0.92657 0.80382 1.91602 1.94510 1.92087 1.31431 1.23654 0.94507 0.93528 0.93809 1.68074 1.18650 1.34929 1.00318 1.23333 0.97530 1.02495 0.94334 1.22748 0.96133 0.88311 0.96035 1.48454 1.53306 1.29670 1.03391 1.19700 0.79526 0.84313 0.82651 1.90694 1.40784 1.28825 1.83552 1.23313 1.04705 1.02995 0.96146 1.85605 1.70857 1.40065 0.95970 1.23224 1.38182 1.14112 0.93617 0.89815 1.26124 0.95776 0.97905 0.99397 1.70190 1.40257 1.30217 1.14143 0.84915 0.77878 0.77773 0.77444 1.17862 1.20057 1.20013 0.91046 0.89892 0.94265 0.74917 0.78206 0.77542 0.86091 0.89954 0.88478 0.89496 0.87354 0.87548 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 9.10 71.98 0.66 -2.42 16 2 C 0.13 2.31 3.20 45.34 0.15 2.46 16 3 H 0.07 1.42 7.71 -2.39 -0.02 1.40 16 4 C 0.15 1.38 2.56 46.18 0.12 1.49 16 5 H 0.13 0.65 6.07 -2.39 -0.01 0.63 16 6 N -0.69 -6.88 5.36 -318.53 -1.71 -8.59 16 7 C 0.35 4.42 7.67 132.95 1.02 5.44 16 8 C 0.03 0.37 10.40 84.90 0.88 1.25 16 9 N -0.45 -7.70 10.50 -195.81 -2.06 -9.76 16 10 C 0.16 2.62 8.43 84.66 0.71 3.33 16 11 F -0.12 -2.01 17.29 44.97 0.78 -1.23 16 12 C 0.11 1.34 11.20 84.69 0.95 2.29 16 13 N -0.50 -7.25 10.53 -192.39 -2.03 -9.28 16 14 C -0.14 -1.05 6.77 31.99 0.22 -0.84 16 15 C 0.09 1.17 6.71 86.79 0.58 1.76 16 16 N -0.61 -13.90 3.07 -787.25 -2.42 -16.32 16 17 C 0.55 19.31 7.66 87.66 0.67 19.99 16 18 O -0.56 -24.99 14.91 -3.02 -0.04 -25.04 16 19 C -0.12 -4.57 5.18 71.23 0.37 -4.20 16 20 S -0.15 -8.27 20.57 -56.49 -1.16 -9.43 16 21 C -0.54 -30.36 9.50 67.95 0.65 -29.72 16 22 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 23 C 0.01 0.71 5.49 84.86 0.47 1.18 16 24 N -0.91 -55.36 13.22 21.65 0.29 -55.07 16 25 Si 1.00 42.80 29.55 68.60 2.03 44.83 16 26 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 27 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 28 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.04 1.10 6.89 -2.38 -0.02 1.08 16 32 H 0.41 4.39 8.49 -92.71 -0.79 3.60 16 33 H 0.20 1.10 6.19 -2.91 -0.02 1.08 16 34 H 0.21 1.21 8.06 -2.91 -0.02 1.18 16 35 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 37 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.09 1.18 7.50 -2.39 -0.02 1.16 16 39 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 40 H 0.11 3.64 7.86 -2.40 -0.02 3.63 16 41 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -79.70 363.94 1.41 -78.29 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 0.30 Total: 9.59 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 7.43 Total: 2.00 kcal Atomic # 7 Polarization: -91.09 SS G_CDS: -7.92 Total: -99.01 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.04 Total: -25.04 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.78 Total: -1.23 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: -8.27 SS G_CDS: -1.16 Total: -9.43 kcal Total: -79.70 1.41 -78.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122940084.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.101 kcal (2) G-P(sol) polarization free energy of solvation -79.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds