Wall clock time and date at job start Sat Apr 11 2020 05:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.99475 * 2 1 4 4 C 1.54324 * 109.88399 * 238.90571 * 2 1 3 5 5 H 1.09002 * 110.87002 * 144.34087 * 4 2 1 6 6 N 1.46496 * 110.72014 * 21.13620 * 4 2 1 7 7 C 1.38539 * 119.99881 * 160.02420 * 6 4 2 8 8 N 1.32452 * 119.18623 * 179.97438 * 7 6 4 9 9 C 1.32304 * 120.76064 * 179.97438 * 8 7 6 10 10 C 1.38777 * 119.17079 * 0.02562 * 9 8 7 11 11 F 1.35096 * 120.74560 * 179.97438 * 10 9 8 12 12 C 1.38784 * 118.51129 * 0.02562 * 10 9 8 13 13 N 1.32304 * 119.16638 * 359.97438 * 12 10 9 14 14 C 1.55155 * 102.94030 * 262.77205 * 4 2 1 15 15 C 1.54916 * 101.58475 * 324.50025 * 14 4 2 16 16 N 1.47023 * 109.88257 * 121.09423 * 2 1 3 17 17 C 1.34782 * 125.64717 * 300.51146 * 16 2 1 18 18 O 1.21278 * 119.99891 * 359.97438 * 17 16 2 19 19 C 1.50700 * 119.99631 * 179.97438 * 17 16 2 20 20 S 1.81000 * 109.46860 * 180.02562 * 19 17 16 21 21 C 1.76204 * 100.00051 * 179.97438 * 20 19 17 22 22 H 1.07997 * 119.99504 * 0.02562 * 21 20 19 23 23 C 1.38800 * 120.00078 * 179.97438 * 21 20 19 24 24 N 1.31628 * 119.99944 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99846 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.46954 * 90.00054 * 25 23 21 27 27 H 1.48502 * 109.46876 * 209.99925 * 25 23 21 28 28 H 1.48491 * 109.47066 * 329.99817 * 25 23 21 29 29 H 1.09004 * 109.47053 * 181.09571 * 1 2 3 30 30 H 1.08998 * 109.47775 * 301.09386 * 1 2 3 31 31 H 1.08999 * 109.47333 * 61.09757 * 1 2 3 32 32 H 0.96997 * 120.00264 * 340.02644 * 6 4 2 33 33 H 1.07999 * 120.41396 * 179.97438 * 9 8 7 34 34 H 1.07999 * 120.41649 * 179.97438 * 12 10 9 35 35 H 1.08997 * 111.00486 * 82.57149 * 14 4 2 36 36 H 1.09000 * 111.00805 * 206.38616 * 14 4 2 37 37 H 1.08999 * 110.36523 * 155.84937 * 15 14 4 38 38 H 1.09000 * 110.36081 * 278.17258 * 15 14 4 39 39 H 1.09003 * 109.47354 * 300.00143 * 19 17 16 40 40 H 1.08996 * 109.47283 * 60.00468 * 19 17 16 41 41 H 0.96997 * 119.99765 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2427 5 1 2.9651 -0.2843 -1.6210 6 7 1.0293 -0.8026 -2.2875 7 6 1.3920 -1.0444 -3.6025 8 7 0.4515 -1.0896 -4.5341 9 6 0.7630 -1.3178 -5.7995 10 6 2.0932 -1.5114 -6.1444 11 9 2.4469 -1.7472 -7.4268 12 6 3.0519 -1.4583 -5.1423 13 7 2.6706 -1.2258 -3.8969 14 6 2.3519 -2.1694 -0.6924 15 6 2.8568 -1.8497 0.7369 16 7 2.0300 -0.7140 1.1839 17 6 1.7742 -0.3852 2.4658 18 8 1.0769 0.5746 2.7180 19 6 2.3546 -1.2101 3.5854 20 16 1.8329 -0.5207 5.1756 21 6 2.6298 -1.6457 6.2730 22 1 3.2225 -2.4572 5.8775 23 6 2.4964 -1.4883 7.6456 24 7 1.7743 -0.4989 8.1275 25 14 3.3418 -2.6806 8.8089 26 1 4.7003 -2.1764 9.1333 27 1 2.5472 -2.8010 10.0577 28 1 3.4497 -4.0121 8.1605 29 1 -0.3633 -1.0275 0.0197 30 1 -0.3634 0.5307 0.8800 31 1 -0.3634 0.4967 -0.8996 32 1 0.0963 -0.6684 -2.0586 33 1 -0.0084 -1.3538 -6.5545 34 1 4.0960 -1.6050 -5.3762 35 1 1.4453 -2.7736 -0.6603 36 1 3.1266 -2.6620 -1.2799 37 1 2.7088 -2.7080 1.3923 38 1 3.9091 -1.5666 0.7129 39 1 2.0001 -2.2374 3.5014 40 1 3.4426 -1.1948 3.5218 41 1 1.6814 -0.3887 9.0867 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122940628.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:10 Heat of formation + Delta-G solvation = -6.124165 kcal Electronic energy + Delta-G solvation = -26126.851332 eV Core-core repulsion = 22083.542638 eV Total energy + Delta-G solvation = -4043.308694 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.27875 -41.44317 -40.23708 -37.86652 -35.34225 -34.29262 -32.44983 -32.09918 -31.26599 -29.92159 -28.30760 -26.22701 -25.50977 -25.23965 -23.75050 -23.04828 -20.85212 -19.21680 -19.03705 -18.24325 -17.82507 -17.75380 -16.70276 -16.44145 -16.22171 -15.82550 -15.15602 -15.07782 -14.90888 -14.82068 -14.57294 -14.17382 -13.98160 -13.54171 -13.49744 -13.23368 -12.81123 -12.65378 -12.56175 -12.42364 -12.15562 -12.00270 -11.76539 -11.46315 -11.36112 -11.07974 -11.05133 -11.02862 -10.78024 -10.53135 -9.83884 -9.61193 -9.41351 -9.08529 -8.62393 -8.45684 -8.26116 -6.52667 -6.23654 -3.94497 0.50371 0.50652 2.24696 2.87265 3.00927 3.20971 3.24140 3.25741 3.28825 3.52027 3.55458 3.60941 4.07663 4.11395 4.18719 4.30820 4.34708 4.43228 4.72918 4.86368 4.98193 5.03090 5.10996 5.11612 5.16706 5.30135 5.40374 5.48411 5.58277 5.62658 5.72144 5.81348 5.86854 5.90211 6.09810 6.14426 6.20894 6.39092 6.53817 6.91153 7.57195 7.59320 7.73816 8.33221 8.50069 9.21709 10.83751 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.034129 B = 0.001919 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.207994 B =14586.541213 C =15155.315462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.133 3.867 3 H 0.084 0.916 4 C 0.153 3.847 5 H 0.109 0.891 6 N -0.682 5.682 7 C 0.561 3.439 8 N -0.547 5.547 9 C 0.176 3.824 10 C -0.079 4.079 11 F -0.128 7.128 12 C 0.176 3.824 13 N -0.541 5.541 14 C -0.142 4.142 15 C 0.101 3.899 16 N -0.622 5.622 17 C 0.552 3.448 18 O -0.512 6.512 19 C -0.147 4.147 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.420 0.580 33 H 0.178 0.822 34 H 0.179 0.821 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.632 -3.803 -29.130 29.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.028 3.972 3 H 0.102 0.898 4 C 0.047 3.953 5 H 0.127 0.873 6 N -0.322 5.322 7 C 0.204 3.796 8 N -0.269 5.269 9 C 0.006 3.994 10 C -0.106 4.106 11 F -0.107 7.107 12 C 0.006 3.994 13 N -0.263 5.263 14 C -0.182 4.182 15 C -0.022 4.022 16 N -0.360 5.360 17 C 0.340 3.660 18 O -0.385 6.385 19 C -0.298 4.298 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.263 0.737 33 H 0.195 0.805 34 H 0.196 0.804 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.359 -2.060 -27.372 27.452 hybrid contribution 1.339 -2.119 -0.650 2.589 sum 1.697 -4.179 -28.022 28.382 Atomic orbital electron populations 1.22169 0.94781 1.02794 1.03461 1.21530 0.95136 0.96363 0.84130 0.89804 1.21982 0.91104 0.96409 0.85829 0.87302 1.44546 1.11047 1.75242 1.01350 1.19398 0.84822 0.88279 0.87094 1.67962 1.36714 1.21447 1.00771 1.23105 0.93995 0.89535 0.92755 1.19124 0.96038 1.14096 0.81386 1.91516 1.92392 1.92735 1.34106 1.23156 1.00484 0.89656 0.86114 1.68025 1.17287 1.20436 1.20586 1.23234 1.02670 0.96865 0.95406 1.22294 0.95236 0.89834 0.94857 1.48533 1.52136 1.30762 1.04552 1.20029 0.79996 0.84744 0.81200 1.90697 1.37262 1.28077 1.82486 1.23516 1.03841 1.02509 0.99891 1.85398 1.67104 1.40271 0.90553 1.22854 1.36523 1.15886 0.93084 0.90919 1.24994 0.95229 0.96000 0.97362 1.70015 1.37264 1.29301 1.13664 0.86165 0.79219 0.80492 0.79614 1.20252 1.20747 1.19694 0.92033 0.89541 0.91735 0.73722 0.80470 0.80427 0.90284 0.89196 0.89877 0.90828 0.89287 0.89211 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 7.95 37.15 0.30 -1.61 16 2 C 0.13 1.48 3.48 -66.96 -0.23 1.25 16 3 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 4 C 0.15 1.33 3.10 -66.10 -0.21 1.12 16 5 H 0.11 0.95 7.63 -51.93 -0.40 0.55 16 6 N -0.68 -5.82 5.13 -54.00 -0.28 -6.10 16 7 C 0.56 5.19 8.43 -322.71 -2.72 2.47 16 8 N -0.55 -4.93 10.46 -13.87 -0.14 -5.07 16 9 C 0.18 1.21 11.29 -17.15 -0.19 1.02 16 10 C -0.08 -0.54 7.38 -39.18 -0.29 -0.83 16 11 F -0.13 -0.91 17.29 2.25 0.04 -0.87 16 12 C 0.18 1.19 11.29 -17.15 -0.19 0.99 16 13 N -0.54 -4.68 9.27 -13.86 -0.13 -4.81 16 14 C -0.14 -1.17 6.77 -24.58 -0.17 -1.34 16 15 C 0.10 1.01 6.69 -2.53 -0.02 0.99 16 16 N -0.62 -8.34 3.08 -163.02 -0.50 -8.84 16 17 C 0.55 10.15 7.65 -10.98 -0.08 10.06 16 18 O -0.51 -11.26 14.77 5.56 0.08 -11.18 16 19 C -0.15 -2.93 5.16 36.01 0.19 -2.74 16 20 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 21 C -0.54 -15.08 9.50 30.94 0.29 -14.79 16 22 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 23 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 24 N -0.87 -25.97 13.22 55.49 0.73 -25.23 16 25 Si 0.92 21.23 29.55 -169.99 -5.02 16.21 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 29 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 30 H 0.09 1.23 6.77 -51.93 -0.35 0.88 16 31 H 0.06 0.56 6.67 -51.93 -0.35 0.21 16 32 H 0.42 3.41 5.84 -40.82 -0.24 3.18 16 33 H 0.18 0.70 8.06 -52.49 -0.42 0.27 16 34 H 0.18 0.68 8.06 -52.49 -0.42 0.26 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.82 7.48 -51.93 -0.39 0.43 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 1.65 7.85 -51.91 -0.41 1.24 16 40 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 41 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 362.10 15.07 5.46 5.46 Total: -1.00 -34.36 362.10 -10.45 -44.81 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.05 Total: 0.86 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -3.42 Total: -1.42 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: -0.32 Total: -50.05 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.08 Total: -11.18 kcal Atomic # 9 Polarization: -0.91 SS G_CDS: 0.04 Total: -0.87 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.36 -10.45 -44.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122940628.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.683 kcal (2) G-P(sol) polarization free energy of solvation -34.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds