Wall clock time and date at job start Sat Apr 11 2020 05:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 110.00020 * 2 1 4 4 C 1.54327 * 109.87993 * 238.90626 * 2 1 3 5 5 H 1.09002 * 110.72047 * 99.85258 * 4 2 1 6 6 N 1.46495 * 110.72340 * 336.75205 * 4 2 1 7 7 C 1.39119 * 120.00389 * 155.00052 * 6 4 2 8 8 N 1.32563 * 120.10522 * 359.97438 * 7 6 4 9 9 C 1.32308 * 119.94024 * 179.75806 * 8 7 6 10 10 C 1.38065 * 120.16660 * 0.52412 * 9 8 7 11 11 N 1.32354 * 120.21994 * 359.47232 * 10 9 8 12 12 C 1.32069 * 120.05447 * 0.26112 * 11 10 9 13 13 F 1.35094 * 120.08539 * 179.97438 * 12 11 10 14 14 C 1.55156 * 102.94347 * 218.38800 * 4 2 1 15 15 C 1.54912 * 101.58117 * 35.49989 * 14 4 2 16 16 N 1.47024 * 109.88572 * 121.10185 * 2 1 3 17 17 C 1.34775 * 125.64164 * 298.31649 * 16 2 1 18 18 O 1.21273 * 120.00398 * 0.02562 * 17 16 2 19 19 C 1.50705 * 119.99583 * 180.02562 * 17 16 2 20 20 S 1.80999 * 109.46836 * 180.02562 * 19 17 16 21 21 C 1.76204 * 99.99945 * 179.97438 * 20 19 17 22 22 H 1.07998 * 120.00090 * 0.02562 * 21 20 19 23 23 C 1.38798 * 120.00060 * 179.97438 * 21 20 19 24 24 N 1.31625 * 120.00043 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99903 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47254 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.46936 * 120.00021 * 25 23 21 28 28 H 1.48499 * 109.47177 * 240.00221 * 25 23 21 29 29 H 1.09001 * 109.47390 * 181.09283 * 1 2 3 30 30 H 1.09004 * 109.46955 * 301.08954 * 1 2 3 31 31 H 1.08998 * 109.47311 * 61.09453 * 1 2 3 32 32 H 0.97001 * 119.99771 * 335.00467 * 6 4 2 33 33 H 1.08000 * 119.91804 * 180.25536 * 9 8 7 34 34 H 1.08002 * 119.89335 * 179.75852 * 10 9 8 35 35 H 1.09001 * 111.00676 * 153.57625 * 14 4 2 36 36 H 1.09003 * 111.00983 * 277.42920 * 14 4 2 37 37 H 1.09000 * 110.37127 * 204.14915 * 15 14 4 38 38 H 1.09009 * 110.45454 * 81.87591 * 15 14 4 39 39 H 1.09007 * 109.47235 * 299.99886 * 19 17 16 40 40 H 1.08989 * 109.47224 * 60.00429 * 19 17 16 41 41 H 0.97005 * 120.00317 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0547 -0.7495 -1.2428 5 1 2.3499 -0.0460 -2.0213 6 7 1.0471 -1.6855 -1.7475 7 6 1.0607 -2.0677 -3.0851 8 7 1.9843 -1.5858 -3.9050 9 6 1.9971 -1.9552 -5.1754 10 6 1.0443 -2.8332 -5.6522 11 7 0.1192 -3.3184 -4.8394 12 6 0.1014 -2.9596 -3.5685 13 9 -0.8428 -3.4540 -2.7384 14 6 3.2875 -1.5142 -0.6926 15 6 2.8145 -1.8794 0.7367 16 7 2.0300 -0.7142 1.1838 17 6 1.8086 -0.3613 2.4656 18 8 1.1453 0.6220 2.7180 19 6 2.3853 -1.1889 3.5853 20 16 1.9148 -0.4638 5.1755 21 6 2.6985 -1.5981 6.2728 22 1 3.2592 -2.4321 5.8774 23 6 2.5960 -1.4192 7.6454 24 7 1.9131 -0.4024 8.1274 25 14 3.4274 -2.6213 8.8086 26 1 4.1273 -3.6682 8.0215 27 1 4.4116 -1.8950 9.6507 28 1 2.4048 -3.2562 9.6784 29 1 -0.3634 -1.0275 0.0196 30 1 -0.3633 0.5307 0.8801 31 1 -0.3634 0.4967 -0.8996 32 1 0.3703 -2.0387 -1.1491 33 1 2.7522 -1.5656 -5.8420 34 1 1.0565 -3.1288 -6.6909 35 1 3.4851 -2.4110 -1.2798 36 1 4.1654 -0.8689 -0.6605 37 1 3.6716 -2.0339 1.3921 38 1 2.1890 -2.7719 0.7145 39 1 1.9988 -2.2062 3.5216 40 1 3.4718 -1.2072 3.5011 41 1 1.8418 -0.2771 9.0867 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122986984.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:18 Heat of formation + Delta-G solvation = -7.891154 kcal Electronic energy + Delta-G solvation = -26651.096859 eV Core-core repulsion = 22607.711542 eV Total energy + Delta-G solvation = -4043.385317 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.37678 -41.42758 -40.29810 -37.95711 -35.67811 -34.03312 -32.45482 -32.05580 -31.42360 -29.80953 -28.39601 -26.26408 -25.51355 -24.83031 -24.18184 -22.88419 -20.94931 -19.19998 -18.96754 -18.39944 -18.07319 -17.68308 -16.82887 -16.65584 -16.44196 -15.67399 -15.17097 -14.83089 -14.72723 -14.64728 -14.42685 -14.14914 -14.00984 -13.88483 -13.63451 -13.39476 -12.99844 -12.73225 -12.56119 -12.35168 -12.10009 -11.87414 -11.75348 -11.55254 -11.48343 -11.11411 -11.08504 -11.03428 -10.77713 -10.55950 -9.83125 -9.71499 -9.41629 -9.09790 -8.62712 -8.31954 -8.26042 -6.53146 -6.24246 -3.95022 0.31872 0.66849 2.37726 2.81925 3.00173 3.05074 3.15699 3.19824 3.23796 3.29228 3.55936 3.71040 3.79674 4.08587 4.17950 4.25135 4.55516 4.67367 4.73566 4.91130 4.94522 5.02927 5.04033 5.11156 5.14742 5.27041 5.43221 5.47092 5.58836 5.62990 5.64421 5.74773 5.85881 5.87704 6.09239 6.14390 6.36631 6.45407 6.49306 6.94302 7.34973 7.56989 7.59067 8.32921 8.49799 9.21280 10.83214 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.024159 B = 0.002204 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.686646 B =12700.026096 C =12901.955781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.129 3.871 3 H 0.091 0.909 4 C 0.147 3.853 5 H 0.114 0.886 6 N -0.695 5.695 7 C 0.356 3.644 8 N -0.478 5.478 9 C 0.098 3.902 10 C 0.008 3.992 11 N -0.431 5.431 12 C 0.196 3.804 13 F -0.107 7.107 14 C -0.141 4.141 15 C 0.099 3.901 16 N -0.624 5.624 17 C 0.551 3.449 18 O -0.511 6.511 19 C -0.147 4.147 20 S -0.060 6.060 21 C -0.534 4.534 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.418 0.582 33 H 0.178 0.822 34 H 0.175 0.825 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.958 -4.129 -28.777 29.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.025 3.975 3 H 0.109 0.891 4 C 0.041 3.959 5 H 0.132 0.868 6 N -0.330 5.330 7 C 0.114 3.886 8 N -0.202 5.202 9 C -0.062 4.062 10 C -0.152 4.152 11 N -0.150 5.150 12 C 0.030 3.970 13 F -0.087 7.087 14 C -0.180 4.180 15 C -0.025 4.025 16 N -0.362 5.362 17 C 0.339 3.661 18 O -0.385 6.385 19 C -0.298 4.298 20 S 0.166 5.834 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.205 1.205 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.259 0.741 33 H 0.195 0.805 34 H 0.192 0.808 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.987 -2.422 -28.024 28.146 hybrid contribution 0.853 -2.333 0.778 2.604 sum 1.841 -4.755 -27.246 27.719 Atomic orbital electron populations 1.22070 0.94479 1.01908 1.03567 1.21754 0.95184 0.96729 0.83820 0.89147 1.21999 0.87499 0.90877 0.95508 0.86807 1.44868 1.34371 1.48764 1.04998 1.19098 0.90612 0.90997 0.87919 1.68128 1.22207 1.25417 1.04407 1.23563 0.97762 0.93690 0.91206 1.23197 0.92724 0.98814 1.00462 1.67609 1.23586 1.22009 1.01773 1.18414 0.91240 0.99446 0.87869 1.91633 1.62354 1.86379 1.68302 1.23217 0.97819 1.01635 0.95360 1.22315 0.95809 0.88936 0.95415 1.48650 1.54137 1.28713 1.04748 1.20020 0.79735 0.85019 0.81282 1.90700 1.38456 1.26826 1.82495 1.23517 1.03658 1.02613 0.99966 1.85399 1.69682 1.37712 0.90575 1.22889 1.38226 1.14069 0.93074 0.90903 1.24996 0.95244 0.95996 0.97375 1.70025 1.38537 1.28092 1.13587 0.86114 0.79026 0.80238 0.80099 1.19625 1.20544 1.20543 0.92865 0.90091 0.91688 0.74096 0.80487 0.80755 0.89654 0.89165 0.89936 0.91608 0.89365 0.89304 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 8.48 37.15 0.32 -1.49 16 2 C 0.13 1.41 3.43 -66.95 -0.23 1.18 16 3 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 4 C 0.15 1.21 3.22 -66.10 -0.21 0.99 16 5 H 0.11 0.89 7.52 -51.93 -0.39 0.50 16 6 N -0.70 -5.76 4.66 -51.95 -0.24 -6.01 16 7 C 0.36 3.14 7.50 -154.58 -1.16 1.99 16 8 N -0.48 -3.76 9.36 -12.17 -0.11 -3.88 16 9 C 0.10 0.52 11.21 -17.41 -0.20 0.33 16 10 C 0.01 0.05 11.21 -17.39 -0.19 -0.15 16 11 N -0.43 -4.13 10.50 -13.24 -0.14 -4.27 16 12 C 0.20 1.95 8.47 -16.93 -0.14 1.81 16 13 F -0.11 -1.15 16.68 2.25 0.04 -1.11 16 14 C -0.14 -1.10 6.77 -24.58 -0.17 -1.26 16 15 C 0.10 0.99 6.67 -2.53 -0.02 0.97 16 16 N -0.62 -8.27 3.06 -163.02 -0.50 -8.77 16 17 C 0.55 10.12 7.66 -10.98 -0.08 10.04 16 18 O -0.51 -11.26 14.91 5.56 0.08 -11.18 16 19 C -0.15 -2.94 5.16 36.01 0.19 -2.76 16 20 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 21 C -0.53 -15.11 9.50 30.94 0.29 -14.82 16 22 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 23 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 24 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 25 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 H 0.05 0.56 6.24 -51.93 -0.32 0.23 16 30 H 0.08 1.16 6.91 -51.93 -0.36 0.80 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.42 3.56 5.98 -40.82 -0.24 3.32 16 33 H 0.18 0.29 8.06 -52.49 -0.42 -0.13 16 34 H 0.18 0.46 8.06 -52.49 -0.42 0.04 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.83 7.48 -51.93 -0.39 0.44 16 38 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 39 H 0.09 1.66 8.14 -51.91 -0.42 1.23 16 40 H 0.09 1.65 7.85 -51.92 -0.41 1.24 16 41 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 361.64 15.07 5.45 5.45 Total: -1.00 -35.02 361.64 -8.67 -43.68 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -5.04 Total: 0.11 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -1.70 Total: -1.19 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: -0.26 Total: -48.23 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.08 Total: -11.18 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 0.04 Total: -1.11 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.02 -8.67 -43.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122986984.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.792 kcal (2) G-P(sol) polarization free energy of solvation -35.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds