Wall clock time and date at job start Sat Apr 11 2020 05:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.87337 * 2 1 4 4 C 1.54321 * 109.88274 * 238.98569 * 2 1 3 5 5 H 1.09003 * 110.72126 * 336.77443 * 4 2 1 6 6 N 1.46500 * 110.72054 * 99.87322 * 4 2 1 7 7 C 1.39122 * 119.99645 * 204.99858 * 6 4 2 8 8 N 1.32568 * 120.11139 * 0.02562 * 7 6 4 9 9 C 1.32307 * 119.94201 * 179.97438 * 8 7 6 10 10 C 1.38062 * 120.16738 * 359.97438 * 9 8 7 11 11 N 1.32344 * 120.21892 * 0.27677 * 10 9 8 12 12 C 1.32074 * 120.05740 * 359.44585 * 11 10 9 13 13 F 1.35104 * 120.08274 * 180.26996 * 12 11 10 14 14 C 1.55157 * 102.93958 * 218.23439 * 4 2 1 15 15 C 1.54911 * 101.58317 * 35.50343 * 14 4 2 16 16 N 1.47018 * 110.01035 * 121.09753 * 2 1 3 17 17 C 1.34780 * 125.64950 * 298.39466 * 16 2 1 18 18 O 1.21284 * 119.99803 * 359.97438 * 17 16 2 19 19 C 1.50700 * 120.00031 * 180.02562 * 17 16 2 20 20 S 1.81000 * 109.47154 * 180.02562 * 19 17 16 21 21 C 1.76200 * 100.00183 * 179.97438 * 20 19 17 22 22 H 1.08002 * 119.99862 * 359.97438 * 21 20 19 23 23 C 1.38793 * 120.00180 * 180.02562 * 21 20 19 24 24 N 1.31638 * 119.99936 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00339 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47391 * 89.99354 * 25 23 21 27 27 H 1.48501 * 109.47542 * 210.00202 * 25 23 21 28 28 H 1.48503 * 109.46959 * 329.99822 * 25 23 21 29 29 H 1.08997 * 109.46905 * 181.01610 * 1 2 3 30 30 H 1.08996 * 109.47084 * 301.01483 * 1 2 3 31 31 H 1.09003 * 109.47023 * 61.01795 * 1 2 3 32 32 H 0.96990 * 120.00234 * 24.99939 * 6 4 2 33 33 H 1.07999 * 119.91534 * 180.02562 * 9 8 7 34 34 H 1.08002 * 119.88548 * 179.97438 * 10 9 8 35 35 H 1.09005 * 111.00393 * 153.57338 * 14 4 2 36 36 H 1.09000 * 111.00494 * 277.42244 * 14 4 2 37 37 H 1.09000 * 110.36351 * 204.15163 * 15 14 4 38 38 H 1.08996 * 110.46113 * 81.87496 * 15 14 4 39 39 H 1.09007 * 109.46734 * 299.99591 * 19 17 16 40 40 H 1.08993 * 109.47227 * 59.99748 * 19 17 16 41 41 H 0.97002 * 119.99918 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7477 -1.2438 5 1 1.3050 -1.4434 -1.6205 6 7 2.4521 0.1992 -2.2886 7 6 2.4540 -0.1970 -3.6222 8 7 2.0963 -1.4307 -3.9500 9 6 2.0989 -1.8038 -5.2194 10 6 2.4727 -0.9112 -6.2041 11 7 2.8358 0.3205 -5.8837 12 6 2.8312 0.7039 -4.6199 13 9 3.1965 1.9628 -4.2928 14 6 3.2900 -1.5100 -0.6954 15 6 2.8196 -1.8769 0.7342 16 7 2.0331 -0.7135 1.1829 17 6 1.8125 -0.3618 2.4652 18 8 1.1481 0.6206 2.7188 19 6 2.3925 -1.1885 3.5837 20 16 1.9224 -0.4653 5.1749 21 6 2.7099 -1.5983 6.2707 22 1 3.2713 -2.4314 5.8741 23 6 2.6079 -1.4208 7.6435 24 7 1.9232 -0.4057 8.1268 25 14 3.4421 -2.6224 8.8052 26 1 4.8204 -2.1529 9.0971 27 1 2.6691 -2.7055 10.0704 28 1 3.5001 -3.9642 8.1716 29 1 -0.3633 -1.0275 0.0182 30 1 -0.3633 0.5295 0.8807 31 1 -0.3633 0.4980 -0.8990 32 1 2.7137 1.1023 -2.0506 33 1 1.8070 -2.8088 -5.4859 34 1 2.4736 -1.2207 -7.2388 35 1 3.4888 -2.4062 -1.2833 36 1 4.1665 -0.8627 -0.6642 37 1 3.6779 -2.0298 1.3885 38 1 2.1961 -2.7707 0.7125 39 1 2.0080 -2.2066 3.5200 40 1 3.4789 -1.2044 3.4982 41 1 1.8522 -0.2815 9.0862 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122986994.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:23 Heat of formation + Delta-G solvation = -13.442339 kcal Electronic energy + Delta-G solvation = -26331.800128 eV Core-core repulsion = 22288.174094 eV Total energy + Delta-G solvation = -4043.626034 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.41397 -41.42332 -40.20925 -37.89853 -35.86650 -34.10221 -32.45187 -32.06423 -31.39075 -29.93249 -28.47149 -26.08609 -25.51151 -24.80385 -23.84787 -22.91563 -21.35272 -19.41946 -18.73414 -18.43508 -18.15585 -17.65744 -16.79152 -16.72961 -16.17759 -15.74236 -15.22055 -14.96030 -14.82334 -14.57398 -14.46058 -14.09681 -13.99327 -13.96771 -13.67627 -13.18818 -12.93744 -12.68895 -12.59704 -12.43067 -12.09620 -12.02934 -11.85223 -11.68883 -11.40819 -11.08443 -11.05184 -11.01149 -10.78248 -10.52711 -9.84370 -9.74838 -9.42422 -9.08850 -8.62799 -8.34892 -8.26500 -6.53094 -6.23933 -3.94882 0.28993 0.63867 2.25519 2.85776 3.00026 3.02961 3.13068 3.20670 3.24051 3.28576 3.55557 3.69076 3.77994 4.08099 4.18151 4.27229 4.52922 4.66118 4.74407 4.90864 4.91739 4.99112 5.01164 5.11280 5.17974 5.33585 5.44468 5.47798 5.58645 5.63377 5.64413 5.78860 5.87550 5.90111 6.09511 6.17069 6.33095 6.43521 6.47343 6.90607 7.31760 7.56729 7.58747 8.32843 8.49439 9.21363 10.83447 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.029600 B = 0.002045 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.723088 B =13691.059004 C =14040.192890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.132 3.868 3 H 0.077 0.923 4 C 0.147 3.853 5 H 0.113 0.887 6 N -0.697 5.697 7 C 0.358 3.642 8 N -0.477 5.477 9 C 0.098 3.902 10 C 0.010 3.990 11 N -0.431 5.431 12 C 0.197 3.803 13 F -0.107 7.107 14 C -0.144 4.144 15 C 0.102 3.898 16 N -0.622 5.622 17 C 0.551 3.449 18 O -0.511 6.511 19 C -0.147 4.147 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.417 0.583 33 H 0.179 0.821 34 H 0.176 0.824 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.688 -4.588 -28.722 29.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.027 3.973 3 H 0.095 0.905 4 C 0.042 3.958 5 H 0.131 0.869 6 N -0.329 5.329 7 C 0.115 3.885 8 N -0.200 5.200 9 C -0.062 4.062 10 C -0.150 4.150 11 N -0.150 5.150 12 C 0.031 3.969 13 F -0.087 7.087 14 C -0.183 4.183 15 C -0.022 4.022 16 N -0.360 5.360 17 C 0.340 3.660 18 O -0.385 6.385 19 C -0.297 4.297 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.255 0.745 33 H 0.196 0.804 34 H 0.193 0.807 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.568 -3.089 -27.912 28.088 hybrid contribution 1.577 -1.330 0.490 2.120 sum 2.145 -4.419 -27.422 27.858 Atomic orbital electron populations 1.22133 0.93924 1.02711 1.03196 1.21557 0.95228 0.96324 0.84158 0.90478 1.22120 0.97092 0.90654 0.85974 0.86908 1.44581 1.71406 1.15811 1.01117 1.19048 0.93123 0.90011 0.86317 1.68121 1.17830 1.13333 1.20746 1.23580 0.93996 1.01332 0.87261 1.23209 1.01861 0.88018 1.01953 1.67608 1.11278 1.18936 1.17160 1.18400 1.06551 0.82222 0.89742 1.91631 1.89279 1.36076 1.91685 1.23236 0.98091 1.01491 0.95509 1.22289 0.95887 0.89210 0.94780 1.48513 1.53983 1.28922 1.04560 1.20043 0.79770 0.85016 0.81207 1.90703 1.38459 1.26892 1.82421 1.23513 1.03634 1.02674 0.99908 1.85405 1.69481 1.37908 0.90535 1.22850 1.38194 1.14199 0.93084 0.90922 1.24997 0.95234 0.96018 0.97361 1.70021 1.38394 1.28204 1.13626 0.86162 0.79200 0.80518 0.79586 1.20263 1.20740 1.19686 0.92191 0.90337 0.92022 0.74473 0.80407 0.80682 0.89272 0.90203 0.89850 0.90918 0.89217 0.89289 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.10 37.16 0.34 -1.54 16 2 C 0.13 1.48 3.20 -66.96 -0.21 1.27 16 3 H 0.08 0.91 7.72 -51.93 -0.40 0.50 16 4 C 0.15 1.25 2.88 -66.10 -0.19 1.06 16 5 H 0.11 0.98 7.23 -51.93 -0.38 0.61 16 6 N -0.70 -5.60 5.33 -51.95 -0.28 -5.87 16 7 C 0.36 3.11 7.50 -154.58 -1.16 1.95 16 8 N -0.48 -3.79 9.36 -12.17 -0.11 -3.90 16 9 C 0.10 0.52 11.21 -17.41 -0.20 0.33 16 10 C 0.01 0.06 11.21 -17.40 -0.19 -0.14 16 11 N -0.43 -4.01 10.50 -13.24 -0.14 -4.15 16 12 C 0.20 1.88 8.47 -16.93 -0.14 1.74 16 13 F -0.11 -1.08 16.68 2.25 0.04 -1.04 16 14 C -0.14 -1.16 6.77 -24.58 -0.17 -1.32 16 15 C 0.10 1.01 6.69 -2.53 -0.02 1.00 16 16 N -0.62 -8.39 3.07 -163.02 -0.50 -8.89 16 17 C 0.55 10.20 7.66 -10.98 -0.08 10.12 16 18 O -0.51 -11.35 14.92 5.55 0.08 -11.27 16 19 C -0.15 -2.93 5.16 36.01 0.19 -2.74 16 20 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 21 C -0.54 -15.08 9.50 30.94 0.29 -14.79 16 22 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 23 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 24 N -0.87 -25.99 13.22 55.49 0.73 -25.26 16 25 Si 0.92 21.24 29.55 -169.99 -5.02 16.21 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.16 6.91 -51.93 -0.36 0.80 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.42 3.06 7.86 -40.82 -0.32 2.74 16 33 H 0.18 0.30 8.06 -52.49 -0.42 -0.13 16 34 H 0.18 0.42 8.06 -52.49 -0.42 0.00 16 35 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.82 7.48 -51.93 -0.39 0.43 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 40 H 0.09 1.65 7.85 -51.92 -0.41 1.24 16 41 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 365.48 15.07 5.51 5.51 Total: -1.00 -35.23 365.48 -8.72 -43.95 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -5.18 Total: -0.38 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -1.64 Total: -1.09 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: -0.30 Total: -48.07 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.08 Total: -11.27 kcal Atomic # 9 Polarization: -1.08 SS G_CDS: 0.04 Total: -1.04 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.23 -8.72 -43.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122986994.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.509 kcal (2) G-P(sol) polarization free energy of solvation -35.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds