Wall clock time and date at job start Sat Apr 11 2020 05:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.87337 * 2 1 4 4 C 1.54321 * 109.88274 * 238.98569 * 2 1 3 5 5 H 1.09003 * 110.72126 * 336.77443 * 4 2 1 6 6 N 1.46500 * 110.72054 * 99.87322 * 4 2 1 7 7 C 1.39122 * 119.99645 * 204.99858 * 6 4 2 8 8 N 1.32568 * 120.11139 * 0.02562 * 7 6 4 9 9 C 1.32307 * 119.94201 * 179.97438 * 8 7 6 10 10 C 1.38062 * 120.16738 * 359.97438 * 9 8 7 11 11 N 1.32344 * 120.21892 * 0.27677 * 10 9 8 12 12 C 1.32074 * 120.05740 * 359.44585 * 11 10 9 13 13 F 1.35104 * 120.08274 * 180.26996 * 12 11 10 14 14 C 1.55157 * 102.93958 * 218.23439 * 4 2 1 15 15 C 1.54911 * 101.58317 * 35.50343 * 14 4 2 16 16 N 1.47018 * 110.01035 * 121.09753 * 2 1 3 17 17 C 1.34780 * 125.64950 * 298.39466 * 16 2 1 18 18 O 1.21284 * 119.99803 * 359.97438 * 17 16 2 19 19 C 1.50700 * 120.00031 * 180.02562 * 17 16 2 20 20 S 1.81000 * 109.47154 * 180.02562 * 19 17 16 21 21 C 1.76200 * 100.00183 * 179.97438 * 20 19 17 22 22 H 1.08002 * 119.99862 * 359.97438 * 21 20 19 23 23 C 1.38793 * 120.00180 * 180.02562 * 21 20 19 24 24 N 1.31638 * 119.99936 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00339 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47391 * 89.99354 * 25 23 21 27 27 H 1.48501 * 109.47542 * 210.00202 * 25 23 21 28 28 H 1.48503 * 109.46959 * 329.99822 * 25 23 21 29 29 H 1.08997 * 109.46905 * 181.01610 * 1 2 3 30 30 H 1.08996 * 109.47084 * 301.01483 * 1 2 3 31 31 H 1.09003 * 109.47023 * 61.01795 * 1 2 3 32 32 H 0.96990 * 120.00234 * 24.99939 * 6 4 2 33 33 H 1.07999 * 119.91534 * 180.02562 * 9 8 7 34 34 H 1.08002 * 119.88548 * 179.97438 * 10 9 8 35 35 H 1.09005 * 111.00393 * 153.57338 * 14 4 2 36 36 H 1.09000 * 111.00494 * 277.42244 * 14 4 2 37 37 H 1.09000 * 110.36351 * 204.15163 * 15 14 4 38 38 H 1.08996 * 110.46113 * 81.87496 * 15 14 4 39 39 H 1.09007 * 109.46734 * 299.99591 * 19 17 16 40 40 H 1.08993 * 109.47227 * 59.99748 * 19 17 16 41 41 H 0.97002 * 119.99918 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7477 -1.2438 5 1 1.3050 -1.4434 -1.6205 6 7 2.4521 0.1992 -2.2886 7 6 2.4540 -0.1970 -3.6222 8 7 2.0963 -1.4307 -3.9500 9 6 2.0989 -1.8038 -5.2194 10 6 2.4727 -0.9112 -6.2041 11 7 2.8358 0.3205 -5.8837 12 6 2.8312 0.7039 -4.6199 13 9 3.1965 1.9628 -4.2928 14 6 3.2900 -1.5100 -0.6954 15 6 2.8196 -1.8769 0.7342 16 7 2.0331 -0.7135 1.1829 17 6 1.8125 -0.3618 2.4652 18 8 1.1481 0.6206 2.7188 19 6 2.3925 -1.1885 3.5837 20 16 1.9224 -0.4653 5.1749 21 6 2.7099 -1.5983 6.2707 22 1 3.2713 -2.4314 5.8741 23 6 2.6079 -1.4208 7.6435 24 7 1.9232 -0.4057 8.1268 25 14 3.4421 -2.6224 8.8052 26 1 4.8204 -2.1529 9.0971 27 1 2.6691 -2.7055 10.0704 28 1 3.5001 -3.9642 8.1716 29 1 -0.3633 -1.0275 0.0182 30 1 -0.3633 0.5295 0.8807 31 1 -0.3633 0.4980 -0.8990 32 1 2.7137 1.1023 -2.0506 33 1 1.8070 -2.8088 -5.4859 34 1 2.4736 -1.2207 -7.2388 35 1 3.4888 -2.4062 -1.2833 36 1 4.1665 -0.8627 -0.6642 37 1 3.6779 -2.0298 1.3885 38 1 2.1961 -2.7707 0.7125 39 1 2.0080 -2.2066 3.5200 40 1 3.4789 -1.2044 3.4982 41 1 1.8522 -0.2815 9.0862 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122986994.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:22 Heat of formation + Delta-G solvation = -38.154197 kcal Electronic energy + Delta-G solvation = -26332.871714 eV Core-core repulsion = 22288.174094 eV Total energy + Delta-G solvation = -4044.697621 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.06708 -41.99486 -41.28049 -39.05282 -36.67198 -34.71987 -34.58937 -33.08239 -32.25168 -30.83429 -29.68287 -27.66480 -26.83418 -25.41920 -24.46323 -23.95965 -22.12893 -20.60489 -19.59033 -19.42527 -19.04380 -18.79164 -17.94284 -17.42307 -17.23524 -16.88556 -16.61206 -16.22330 -16.00245 -15.69089 -15.22543 -15.20332 -15.00186 -14.77924 -14.52021 -14.28540 -14.09520 -14.00741 -13.68621 -13.42531 -13.16808 -13.10070 -12.89385 -12.83548 -12.68282 -12.62503 -12.51837 -12.13303 -11.84178 -11.72290 -11.15927 -11.14718 -10.90788 -10.29045 -10.27650 -9.77526 -8.92682 -8.68210 -8.35177 -6.13621 -0.23207 0.10059 1.19723 1.41535 1.42399 1.53532 1.55658 1.70683 2.12458 2.26835 2.46496 2.61870 2.99031 3.14586 3.22594 3.25229 3.35302 3.51498 3.85777 3.89949 4.07087 4.13430 4.17325 4.24109 4.26340 4.33816 4.44839 4.53887 4.56733 4.65824 4.73060 4.88227 4.96726 5.04705 5.16231 5.28592 5.36565 5.41326 5.80091 5.88906 6.19250 6.33092 6.37604 6.77043 7.06043 7.10103 8.73978 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.029600 B = 0.002045 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.723088 B =13691.059004 C =14040.192890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.128 3.872 3 H 0.069 0.931 4 C 0.165 3.835 5 H 0.120 0.880 6 N -0.698 5.698 7 C 0.352 3.648 8 N -0.488 5.488 9 C 0.111 3.889 10 C 0.016 3.984 11 N -0.459 5.459 12 C 0.166 3.834 13 F -0.121 7.121 14 C -0.131 4.131 15 C 0.093 3.907 16 N -0.612 5.612 17 C 0.549 3.451 18 O -0.560 6.560 19 C -0.120 4.120 20 S -0.151 6.151 21 C -0.544 4.544 22 H 0.083 0.917 23 C 0.012 3.988 24 N -0.911 5.911 25 Si 0.999 3.001 26 H -0.268 1.268 27 H -0.278 1.278 28 H -0.257 1.257 29 H 0.066 0.934 30 H 0.041 0.959 31 H 0.079 0.921 32 H 0.417 0.583 33 H 0.221 0.779 34 H 0.211 0.789 35 H 0.110 0.890 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.789 -7.902 -31.085 32.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.024 3.976 3 H 0.087 0.913 4 C 0.059 3.941 5 H 0.137 0.863 6 N -0.331 5.331 7 C 0.111 3.889 8 N -0.211 5.211 9 C -0.050 4.050 10 C -0.145 4.145 11 N -0.178 5.178 12 C 0.002 3.998 13 F -0.100 7.100 14 C -0.171 4.171 15 C -0.029 4.029 16 N -0.347 5.347 17 C 0.337 3.663 18 O -0.438 6.438 19 C -0.271 4.271 20 S 0.076 5.924 21 C -0.692 4.692 22 H 0.102 0.898 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.821 3.179 26 H -0.193 1.193 27 H -0.204 1.204 28 H -0.181 1.181 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.256 0.744 33 H 0.238 0.762 34 H 0.228 0.772 35 H 0.129 0.871 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.696 -6.405 -30.317 31.032 hybrid contribution 1.204 -0.382 0.950 1.580 sum 2.900 -6.787 -29.367 30.281 Atomic orbital electron populations 1.22050 0.94148 1.02791 1.02321 1.21710 0.95094 0.96317 0.84512 0.91310 1.21897 0.97388 0.90154 0.84676 0.86258 1.44489 1.71758 1.15821 1.01010 1.18992 0.93589 0.90312 0.86037 1.68197 1.17925 1.12741 1.22200 1.24317 0.91781 1.02787 0.86129 1.23915 0.99873 0.86823 1.03867 1.67618 1.12194 1.20783 1.17225 1.18514 1.08661 0.82239 0.90345 1.91585 1.89665 1.36934 1.91844 1.23193 0.97509 1.02166 0.94188 1.22640 0.95987 0.88334 0.95952 1.48393 1.53088 1.29749 1.03486 1.19749 0.79581 0.84355 0.82569 1.90689 1.40764 1.28857 1.83462 1.23308 1.04669 1.02940 0.96180 1.85597 1.70678 1.40261 0.95826 1.23186 1.38128 1.14281 0.93628 0.89841 1.26144 0.95777 0.97974 0.99353 1.70190 1.40086 1.30415 1.14095 0.84945 0.77977 0.78201 0.76807 1.19336 1.20363 1.18055 0.91456 0.93989 0.90174 0.74408 0.76244 0.77219 0.87146 0.90371 0.89341 0.88968 0.87406 0.87522 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.10 71.98 0.66 -2.92 16 2 C 0.13 2.79 3.20 45.34 0.15 2.94 16 3 H 0.07 1.64 7.72 -2.38 -0.02 1.62 16 4 C 0.16 2.47 2.88 46.18 0.13 2.60 16 5 H 0.12 1.71 7.23 -2.39 -0.02 1.70 16 6 N -0.70 -10.38 5.33 -318.28 -1.70 -12.07 16 7 C 0.35 5.56 7.50 133.09 1.00 6.55 16 8 N -0.49 -6.24 9.36 -192.42 -1.80 -8.04 16 9 C 0.11 0.74 11.21 84.58 0.95 1.69 16 10 C 0.02 0.14 11.21 84.57 0.95 1.09 16 11 N -0.46 -7.89 10.50 -195.79 -2.06 -9.94 16 12 C 0.17 3.08 8.47 84.99 0.72 3.80 16 13 F -0.12 -2.50 16.68 44.97 0.75 -1.75 16 14 C -0.13 -1.73 6.77 31.99 0.22 -1.51 16 15 C 0.09 1.60 6.69 86.86 0.58 2.18 16 16 N -0.61 -15.97 3.07 -788.05 -2.42 -18.39 16 17 C 0.55 20.57 7.66 87.66 0.67 21.24 16 18 O -0.56 -26.06 14.92 -3.04 -0.05 -26.10 16 19 C -0.12 -4.76 5.16 71.24 0.37 -4.40 16 20 S -0.15 -8.38 20.57 -56.49 -1.16 -9.54 16 21 C -0.54 -30.91 9.50 67.95 0.65 -30.26 16 22 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 23 C 0.01 0.69 5.49 84.85 0.47 1.16 16 24 N -0.91 -55.97 13.22 21.65 0.29 -55.68 16 25 Si 1.00 43.33 29.55 68.60 2.03 45.35 16 26 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 27 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 28 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 29 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.04 1.29 6.91 -2.39 -0.02 1.27 16 31 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.42 6.06 7.86 -92.72 -0.73 5.33 16 33 H 0.22 -0.50 8.06 -2.91 -0.02 -0.52 16 34 H 0.21 0.11 8.06 -2.91 -0.02 0.09 16 35 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.09 1.48 7.48 -2.39 -0.02 1.46 16 38 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 40 H 0.11 3.84 7.85 -2.40 -0.02 3.82 16 41 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -80.97 365.48 1.73 -79.24 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 0.35 Total: 12.76 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 7.50 Total: 4.16 kcal Atomic # 7 Polarization: -96.44 SS G_CDS: -7.68 Total: -104.13 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.05 Total: -26.10 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.75 Total: -1.75 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.54 kcal Total: -80.97 1.73 -79.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122986994.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.087 kcal (2) G-P(sol) polarization free energy of solvation -80.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds