Wall clock time and date at job start Sat Apr 11 2020 05:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.87378 * 2 1 4 4 C 1.54323 * 109.88139 * 121.01725 * 2 1 3 5 5 C 1.55164 * 102.94014 * 141.76813 * 4 2 1 6 6 H 1.08991 * 111.00800 * 82.57191 * 5 4 2 7 7 N 1.46509 * 111.00063 * 206.42259 * 5 4 2 8 8 C 1.38530 * 119.99854 * 204.99817 * 7 5 4 9 9 N 1.32456 * 119.18988 * 359.72474 * 8 7 5 10 10 C 1.32299 * 120.77031 * 179.76194 * 9 8 7 11 11 C 1.38781 * 119.16196 * 0.50716 * 10 9 8 12 12 F 1.35104 * 120.74652 * 179.77241 * 11 10 9 13 13 C 1.38788 * 118.51166 * 359.75132 * 11 10 9 14 14 N 1.32300 * 119.16607 * 359.97438 * 13 11 10 15 15 C 1.54904 * 101.57813 * 324.49251 * 5 4 2 16 16 N 1.47021 * 110.01027 * 238.90147 * 2 1 3 17 17 C 1.34777 * 125.64945 * 61.54400 * 16 2 1 18 18 O 1.21287 * 119.99819 * 0.02562 * 17 16 2 19 19 C 1.50697 * 120.00034 * 180.02562 * 17 16 2 20 20 S 1.81005 * 109.47172 * 180.02562 * 19 17 16 21 21 C 1.76194 * 100.00182 * 179.97438 * 20 19 17 22 22 H 1.08002 * 119.99766 * 0.02562 * 21 20 19 23 23 C 1.38803 * 120.00124 * 179.97438 * 21 20 19 24 24 N 1.31630 * 119.99835 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99825 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47189 * 90.00717 * 25 23 21 27 27 H 1.48506 * 109.46661 * 209.99970 * 25 23 21 28 28 H 1.48495 * 109.47264 * 329.99989 * 25 23 21 29 29 H 1.09002 * 109.46917 * 299.29811 * 1 2 3 30 30 H 1.08999 * 109.47171 * 59.29872 * 1 2 3 31 31 H 1.08998 * 109.47003 * 179.29921 * 1 2 3 32 32 H 1.09002 * 110.71769 * 260.12351 * 4 2 1 33 33 H 1.08999 * 110.72478 * 23.40044 * 4 2 1 34 34 H 0.96995 * 119.99825 * 24.99645 * 7 5 4 35 35 H 1.07998 * 120.41969 * 180.23546 * 10 9 8 36 36 H 1.07997 * 120.41673 * 179.97438 * 13 11 10 37 37 H 1.09002 * 110.36826 * 155.85543 * 15 5 4 38 38 H 1.09001 * 110.37055 * 278.17052 * 15 5 4 39 39 H 1.09000 * 109.47168 * 300.00165 * 19 17 16 40 40 H 1.08993 * 109.47196 * 60.00454 * 19 17 16 41 41 H 0.96995 * 119.99860 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 1.2437 5 6 3.2901 -1.5101 0.6953 6 1 4.1665 -0.8628 0.6642 7 7 3.5572 -2.7145 1.4855 8 6 4.8363 -3.2447 1.5291 9 7 5.8045 -2.6530 0.8458 10 6 7.0383 -3.1300 0.8690 11 6 7.3087 -4.2702 1.6125 12 9 8.5561 -4.7874 1.6550 13 6 6.2690 -4.8671 2.3118 14 7 5.0599 -4.3338 2.2489 15 6 2.8196 -1.8769 -0.7342 16 7 2.0331 -0.7135 -1.1829 17 6 1.8116 -0.3625 -2.4652 18 8 1.1461 0.6193 -2.7188 19 6 2.3907 -1.1898 -3.5837 20 16 1.9206 -0.4665 -5.1750 21 6 2.7083 -1.5994 -6.2707 22 1 3.2698 -2.4324 -5.8741 23 6 2.6064 -1.4218 -7.6435 24 7 1.9217 -0.4068 -8.1269 25 14 3.4410 -2.6233 -8.8051 26 1 2.5051 -3.7298 -9.1291 27 1 3.8251 -1.9182 -10.0544 28 1 4.6562 -3.1769 -8.1555 29 1 -0.3633 0.5029 0.8962 30 1 -0.3633 0.5247 -0.8836 31 1 -0.3633 -1.0276 -0.0126 32 1 2.3504 -0.0432 2.0211 33 1 1.3062 -1.4457 1.6187 34 1 2.8385 -3.1406 1.9782 35 1 7.8242 -2.6408 0.3127 36 1 6.4448 -5.7557 2.8998 37 1 3.6778 -2.0299 -1.3885 38 1 2.1956 -2.7704 -0.7107 39 1 3.4773 -1.2057 -3.4990 40 1 2.0064 -2.2077 -3.5193 41 1 1.8508 -0.2825 -9.0862 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123156044.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:25 Heat of formation + Delta-G solvation = -13.789423 kcal Electronic energy + Delta-G solvation = -26271.194364 eV Core-core repulsion = 22227.553279 eV Total energy + Delta-G solvation = -4043.641085 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.22349 -41.37553 -40.11089 -37.75150 -35.46378 -34.25190 -32.43106 -32.22844 -31.37848 -29.16669 -28.62928 -26.05712 -25.49304 -25.39664 -23.95885 -22.26971 -21.42511 -19.18132 -18.78687 -18.37029 -17.78291 -17.67103 -16.86937 -16.40575 -16.22319 -15.53532 -15.06091 -14.94402 -14.81566 -14.78326 -14.51955 -14.31914 -13.82130 -13.62690 -13.45128 -13.16142 -13.08733 -12.63794 -12.61081 -12.24961 -12.11552 -11.98582 -11.75855 -11.41193 -11.17569 -11.06227 -11.03449 -10.99268 -10.76283 -10.64395 -9.81664 -9.57148 -9.38372 -9.06673 -8.61254 -8.42585 -8.23895 -6.50345 -6.21800 -3.92323 0.53923 0.54700 2.23005 2.90528 3.05046 3.22305 3.25910 3.29036 3.30439 3.56439 3.58837 3.65115 4.06089 4.18512 4.20725 4.30172 4.39000 4.47379 4.63902 4.91010 4.97181 5.04806 5.13416 5.16439 5.29332 5.36713 5.45944 5.53664 5.57684 5.62433 5.63766 5.86809 5.90769 6.00000 6.13867 6.20532 6.24435 6.47380 6.54214 6.90783 7.59376 7.62827 7.75934 8.35228 8.54267 9.23590 10.85668 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.009245 B = 0.002955 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3027.845685 B = 9472.961220 C =12127.121772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.139 3.861 3 H 0.079 0.921 4 C -0.134 4.134 5 C 0.147 3.853 6 H 0.114 0.886 7 N -0.681 5.681 8 C 0.559 3.441 9 N -0.540 5.540 10 C 0.178 3.822 11 C -0.074 4.074 12 F -0.127 7.127 13 C 0.174 3.826 14 N -0.547 5.547 15 C 0.092 3.908 16 N -0.621 5.621 17 C 0.552 3.448 18 O -0.511 6.511 19 C -0.148 4.148 20 S -0.059 6.059 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.418 0.582 35 H 0.181 0.819 36 H 0.179 0.821 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.934 -6.847 25.534 27.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.035 3.965 3 H 0.097 0.903 4 C -0.173 4.173 5 C 0.041 3.959 6 H 0.132 0.868 7 N -0.318 5.318 8 C 0.203 3.797 9 N -0.261 5.261 10 C 0.008 3.992 11 C -0.102 4.102 12 F -0.106 7.106 13 C 0.005 3.995 14 N -0.268 5.268 15 C -0.034 4.034 16 N -0.359 5.359 17 C 0.341 3.659 18 O -0.385 6.385 19 C -0.298 4.298 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.744 3.256 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.256 0.744 35 H 0.198 0.802 36 H 0.196 0.804 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.898 -4.703 24.750 25.665 hybrid contribution 2.160 -2.716 -0.247 3.479 sum 7.058 -7.419 24.503 26.557 Atomic orbital electron populations 1.22148 0.94438 1.02372 1.03170 1.21435 0.94999 0.96506 0.83541 0.90266 1.23053 0.96717 0.99861 0.97636 1.22146 0.99067 0.85207 0.89502 0.86812 1.44015 1.05431 1.29534 1.52776 1.19369 0.87274 0.86092 0.86986 1.68011 1.00105 1.33967 1.24034 1.23196 0.93619 0.90287 0.92102 1.19145 0.82647 1.00182 1.08218 1.91525 1.37393 1.86142 1.95560 1.23097 0.85829 0.97525 0.93071 1.67940 1.23049 1.12402 1.23437 1.22639 0.95951 0.89362 0.95432 1.48488 1.53718 1.28716 1.04965 1.19994 0.79735 0.84955 0.81256 1.90699 1.38461 1.26910 1.82386 1.23523 1.03694 1.02570 1.00024 1.85367 1.69463 1.37902 0.90539 1.22855 1.38149 1.14198 0.93107 0.90986 1.24986 0.95252 0.95970 0.97327 1.70015 1.38540 1.28127 1.13600 0.86175 0.79491 0.80262 0.79626 1.20271 1.20713 1.19688 0.91895 0.90566 0.92571 0.89235 0.89739 0.74406 0.80249 0.80423 0.89753 0.91310 0.89293 0.89458 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.11 37.16 0.34 -1.48 16 2 C 0.14 1.53 3.45 -66.95 -0.23 1.30 16 3 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.13 -0.96 6.12 -24.89 -0.15 -1.11 16 5 C 0.15 1.25 3.42 -65.78 -0.23 1.02 16 6 H 0.11 1.08 7.46 -51.93 -0.39 0.69 16 7 N -0.68 -5.33 5.35 -53.69 -0.29 -5.62 16 8 C 0.56 5.34 8.43 -322.73 -2.72 2.62 16 9 N -0.54 -5.34 9.18 -13.87 -0.13 -5.47 16 10 C 0.18 1.45 11.29 -17.15 -0.19 1.26 16 11 C -0.07 -0.58 7.38 -39.18 -0.29 -0.87 16 12 F -0.13 -1.04 17.30 2.25 0.04 -1.00 16 13 C 0.17 1.29 11.29 -17.15 -0.19 1.09 16 14 N -0.55 -4.97 10.46 -13.87 -0.14 -5.12 16 15 C 0.09 1.02 6.38 -2.53 -0.02 1.00 16 16 N -0.62 -8.66 3.07 -163.02 -0.50 -9.16 16 17 C 0.55 10.51 7.66 -10.99 -0.08 10.43 16 18 O -0.51 -11.51 14.91 5.55 0.08 -11.43 16 19 C -0.15 -3.06 5.16 36.00 0.19 -2.87 16 20 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 21 C -0.53 -15.33 9.50 30.94 0.29 -15.04 16 22 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 25 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 1.11 6.90 -51.93 -0.36 0.75 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.50 7.71 -51.93 -0.40 0.10 16 34 H 0.42 2.59 8.68 -40.82 -0.35 2.23 16 35 H 0.18 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.08 1.03 7.48 -51.93 -0.39 0.64 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 1.74 7.85 -51.92 -0.41 1.33 16 40 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 41 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 366.79 15.07 5.53 5.53 Total: -1.00 -35.15 366.79 -10.52 -45.67 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -5.22 Total: 0.08 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -3.38 Total: -0.64 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: -0.33 Total: -50.86 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.08 Total: -11.43 kcal Atomic # 9 Polarization: -1.04 SS G_CDS: 0.04 Total: -1.00 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.15 -10.52 -45.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123156044.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.876 kcal (2) G-P(sol) polarization free energy of solvation -35.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds