Wall clock time and date at job start Sat Apr 11 2020 05:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.99806 * 2 1 4 4 C 1.54335 * 109.99012 * 238.95978 * 2 1 3 5 5 C 1.55160 * 103.02232 * 218.66497 * 4 2 1 6 6 H 1.09000 * 111.00318 * 153.38251 * 5 4 2 7 7 N 1.46493 * 111.00275 * 277.23765 * 5 4 2 8 8 C 1.38538 * 119.99708 * 198.64747 * 7 5 4 9 9 N 1.32454 * 119.18942 * 359.72705 * 8 7 5 10 10 C 1.32304 * 120.76570 * 179.75534 * 9 8 7 11 11 C 1.38775 * 119.16431 * 0.51306 * 10 9 8 12 12 F 1.35107 * 120.74366 * 179.72444 * 11 10 9 13 13 C 1.38778 * 118.51407 * 359.74468 * 11 10 9 14 14 N 1.32291 * 119.17033 * 0.02562 * 13 11 10 15 15 C 1.54912 * 101.57860 * 35.31196 * 5 4 2 16 16 N 1.47022 * 109.88246 * 121.09808 * 2 1 3 17 17 C 1.34784 * 125.64460 * 298.39216 * 16 2 1 18 18 O 1.21274 * 119.99897 * 359.44612 * 17 16 2 19 19 C 1.50695 * 119.99635 * 179.71653 * 17 16 2 20 20 S 1.81006 * 109.46975 * 180.02562 * 19 17 16 21 21 C 1.76200 * 100.00155 * 179.97438 * 20 19 17 22 22 H 1.08005 * 119.99670 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00050 * 180.02562 * 21 20 19 24 24 N 1.31626 * 119.99898 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00049 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.47184 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47541 * 119.99901 * 25 23 21 28 28 H 1.48497 * 109.47123 * 239.99909 * 25 23 21 29 29 H 1.08997 * 109.47325 * 300.35812 * 1 2 3 30 30 H 1.08999 * 109.47289 * 60.35997 * 1 2 3 31 31 H 1.08997 * 109.47190 * 180.35538 * 1 2 3 32 32 H 1.09007 * 110.84889 * 100.19692 * 4 2 1 33 33 H 1.09000 * 110.67030 * 337.05278 * 4 2 1 34 34 H 0.96998 * 120.00487 * 18.64784 * 7 5 4 35 35 H 1.07999 * 120.41508 * 180.27684 * 10 9 8 36 36 H 1.08007 * 120.41551 * 179.97438 * 13 11 10 37 37 H 1.08998 * 110.36455 * 204.15447 * 15 5 4 38 38 H 1.08991 * 110.46486 * 81.87299 * 15 5 4 39 39 H 1.09005 * 109.47403 * 300.00056 * 19 17 16 40 40 H 1.09002 * 109.47422 * 60.00295 * 19 17 16 41 41 H 0.97005 * 120.00072 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7479 -1.2427 5 6 3.2864 -1.5184 -0.6915 6 1 3.4807 -2.4157 -1.2791 7 7 4.4698 -0.6562 -0.6463 8 6 5.7333 -1.2181 -0.5623 9 7 5.8524 -2.5366 -0.5181 10 6 7.0440 -3.1064 -0.4426 11 6 8.1756 -2.3042 -0.3988 12 9 9.4078 -2.8521 -0.3160 13 6 8.0133 -0.9266 -0.4417 14 7 6.7924 -0.4235 -0.5220 15 6 2.8099 -1.8826 0.7368 16 7 2.0300 -0.7141 1.1839 17 6 1.8074 -0.3620 2.4657 18 8 1.1517 0.6265 2.7179 19 6 2.3783 -1.1934 3.5854 20 16 1.9075 -0.4684 5.1758 21 6 2.6842 -1.6073 6.2732 22 1 3.2423 -2.4431 5.8777 23 6 2.5787 -1.4303 7.6458 24 7 1.8989 -0.4114 8.1276 25 14 3.4027 -2.6373 8.8092 26 1 4.1000 -3.6860 8.0221 27 1 4.3872 -1.9160 9.6551 28 1 2.3755 -3.2699 9.6751 29 1 -0.3634 0.5194 0.8867 30 1 -0.3634 0.5082 -0.8932 31 1 -0.3633 -1.0276 0.0064 32 1 2.3597 -0.0450 -2.0192 33 1 1.3066 -1.4405 -1.6225 34 1 4.3688 0.3080 -0.6753 35 1 7.1347 -4.1821 -0.4114 36 1 8.8728 -0.2734 -0.4092 37 1 3.6655 -2.0413 1.3932 38 1 2.1805 -2.7722 0.7134 39 1 1.9878 -2.2089 3.5196 40 1 3.4650 -1.2160 3.5036 41 1 1.8255 -0.2875 9.0869 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123156046.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:29 Heat of formation + Delta-G solvation = -14.537803 kcal Electronic energy + Delta-G solvation = -26658.123151 eV Core-core repulsion = 22614.449614 eV Total energy + Delta-G solvation = -4043.673537 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.14472 -41.31234 -40.12587 -37.74241 -35.18899 -34.16476 -32.43540 -32.21682 -31.29876 -29.15840 -28.67031 -26.11658 -25.49403 -25.30133 -23.82935 -22.53133 -21.14977 -19.06608 -18.78390 -18.35320 -17.71083 -17.65465 -16.78913 -16.34788 -16.15678 -15.50657 -15.11548 -14.93251 -14.81256 -14.67918 -14.41933 -14.25147 -13.84957 -13.74832 -13.39956 -13.12202 -12.84713 -12.60664 -12.57324 -12.24822 -12.04313 -11.90577 -11.70197 -11.40103 -11.31327 -11.07492 -11.02337 -10.95215 -10.76214 -10.61829 -9.80893 -9.49298 -9.36406 -9.07796 -8.62330 -8.29287 -8.23765 -6.50643 -6.22254 -3.92731 0.63238 0.63345 2.39604 2.88213 3.06041 3.21163 3.25665 3.30812 3.38089 3.60018 3.65127 3.70477 4.09784 4.19259 4.21077 4.27100 4.47562 4.53353 4.63998 4.92636 5.04522 5.12972 5.14892 5.23594 5.26470 5.35813 5.46854 5.49433 5.58094 5.61862 5.64282 5.88070 5.93654 5.99654 6.13118 6.23550 6.31633 6.51133 6.61210 7.01164 7.59333 7.65090 7.84948 8.35020 8.56042 9.23287 10.85272 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.008432 B = 0.003471 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3319.824683 B = 8064.245717 C =10778.407484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 H 0.074 0.926 4 C -0.134 4.134 5 C 0.149 3.851 6 H 0.114 0.886 7 N -0.680 5.680 8 C 0.561 3.439 9 N -0.543 5.543 10 C 0.176 3.824 11 C -0.076 4.076 12 F -0.128 7.128 13 C 0.176 3.824 14 N -0.545 5.545 15 C 0.091 3.909 16 N -0.621 5.621 17 C 0.551 3.449 18 O -0.513 6.513 19 C -0.146 4.146 20 S -0.060 6.060 21 C -0.534 4.534 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.279 1.279 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.417 0.583 35 H 0.179 0.821 36 H 0.179 0.821 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.776 -4.835 -24.487 26.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.030 3.970 3 H 0.092 0.908 4 C -0.173 4.173 5 C 0.042 3.958 6 H 0.131 0.869 7 N -0.316 5.316 8 C 0.205 3.795 9 N -0.265 5.265 10 C 0.006 3.994 11 C -0.104 4.104 12 F -0.107 7.107 13 C 0.007 3.993 14 N -0.267 5.267 15 C -0.034 4.034 16 N -0.359 5.359 17 C 0.339 3.661 18 O -0.387 6.387 19 C -0.296 4.296 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.744 3.256 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.205 1.205 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.256 0.744 35 H 0.196 0.804 36 H 0.196 0.804 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.624 -2.948 -23.917 24.746 hybrid contribution 2.431 -2.065 0.650 3.255 sum 8.055 -5.013 -23.267 25.127 Atomic orbital electron populations 1.22133 0.94468 1.02396 1.03085 1.21496 0.95042 0.96299 0.84167 0.90801 1.23100 0.96594 1.00328 0.97267 1.22089 0.83308 0.94218 0.96166 0.86865 1.44096 1.00266 1.09480 1.77768 1.19358 0.86718 0.85129 0.88331 1.67983 1.26292 1.10882 1.21302 1.23133 0.85460 1.01246 0.89530 1.19126 0.82299 0.94125 1.14857 1.91519 1.38982 1.85693 1.94509 1.23110 0.94987 0.91654 0.89577 1.67957 0.98081 1.39516 1.21116 1.22743 0.95918 0.89266 0.95472 1.48596 1.54018 1.28473 1.04856 1.19971 0.79617 0.85092 0.81377 1.90693 1.38836 1.26587 1.82543 1.23503 1.03454 1.02615 1.00075 1.85367 1.69906 1.37476 0.90570 1.22894 1.38473 1.13790 0.93103 0.90972 1.24981 0.95209 0.95996 0.97328 1.70027 1.38648 1.28040 1.13557 0.86126 0.79031 0.80292 0.80115 1.19626 1.20535 1.20509 0.90711 0.91982 0.92442 0.89287 0.88424 0.74440 0.80386 0.80449 0.90131 0.90216 0.89418 0.89702 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.11 37.16 0.34 -1.46 16 2 C 0.13 1.44 3.45 -66.95 -0.23 1.21 16 3 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.13 -0.91 6.05 -24.89 -0.15 -1.06 16 5 C 0.15 1.20 3.32 -65.78 -0.22 0.98 16 6 H 0.11 0.82 7.67 -51.93 -0.40 0.42 16 7 N -0.68 -6.35 5.38 -53.69 -0.29 -6.64 16 8 C 0.56 6.03 8.43 -322.70 -2.72 3.32 16 9 N -0.54 -5.48 9.29 -13.86 -0.13 -5.61 16 10 C 0.18 1.49 11.29 -17.15 -0.19 1.30 16 11 C -0.08 -0.67 7.38 -39.18 -0.29 -0.96 16 12 F -0.13 -1.15 17.30 2.25 0.04 -1.11 16 13 C 0.18 1.58 11.29 -17.15 -0.19 1.38 16 14 N -0.55 -5.96 10.46 -13.86 -0.14 -6.10 16 15 C 0.09 0.99 6.38 -2.53 -0.02 0.97 16 16 N -0.62 -8.60 3.06 -163.01 -0.50 -9.10 16 17 C 0.55 10.58 7.66 -10.98 -0.08 10.50 16 18 O -0.51 -11.66 14.92 5.56 0.08 -11.58 16 19 C -0.15 -3.07 5.16 36.00 0.19 -2.89 16 20 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 21 C -0.53 -15.45 9.50 30.94 0.29 -15.15 16 22 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 23 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 24 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 25 Si 0.92 21.64 29.55 -169.99 -5.02 16.62 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 H 0.07 1.10 6.90 -51.93 -0.36 0.74 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.10 0.53 7.85 -51.93 -0.41 0.12 16 34 H 0.42 3.77 8.73 -40.82 -0.36 3.41 16 35 H 0.18 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.18 1.07 8.06 -52.48 -0.42 0.64 16 37 H 0.08 1.02 7.48 -51.93 -0.39 0.63 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 40 H 0.08 1.73 7.85 -51.92 -0.41 1.32 16 41 H 0.27 7.53 8.31 -40.82 -0.34 7.20 16 LS Contribution 367.15 15.07 5.53 5.53 Total: -1.00 -35.68 367.15 -10.53 -46.20 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -5.24 Total: 1.09 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -3.37 Total: 0.19 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.33 Total: -53.07 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.08 Total: -11.58 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 0.04 Total: -1.11 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.68 -10.53 -46.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123156046.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.663 kcal (2) G-P(sol) polarization free energy of solvation -35.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds