Wall clock time and date at job start Sat Apr 11 2020 05:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.99806 * 2 1 4 4 C 1.54335 * 109.99012 * 238.95978 * 2 1 3 5 5 C 1.55160 * 103.02232 * 218.66497 * 4 2 1 6 6 H 1.09000 * 111.00318 * 153.38251 * 5 4 2 7 7 N 1.46493 * 111.00275 * 277.23765 * 5 4 2 8 8 C 1.38538 * 119.99708 * 198.64747 * 7 5 4 9 9 N 1.32454 * 119.18942 * 359.72705 * 8 7 5 10 10 C 1.32304 * 120.76570 * 179.75534 * 9 8 7 11 11 C 1.38775 * 119.16431 * 0.51306 * 10 9 8 12 12 F 1.35107 * 120.74366 * 179.72444 * 11 10 9 13 13 C 1.38778 * 118.51407 * 359.74468 * 11 10 9 14 14 N 1.32291 * 119.17033 * 0.02562 * 13 11 10 15 15 C 1.54912 * 101.57860 * 35.31196 * 5 4 2 16 16 N 1.47022 * 109.88246 * 121.09808 * 2 1 3 17 17 C 1.34784 * 125.64460 * 298.39216 * 16 2 1 18 18 O 1.21274 * 119.99897 * 359.44612 * 17 16 2 19 19 C 1.50695 * 119.99635 * 179.71653 * 17 16 2 20 20 S 1.81006 * 109.46975 * 180.02562 * 19 17 16 21 21 C 1.76200 * 100.00155 * 179.97438 * 20 19 17 22 22 H 1.08005 * 119.99670 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00050 * 180.02562 * 21 20 19 24 24 N 1.31626 * 119.99898 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00049 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.47184 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47541 * 119.99901 * 25 23 21 28 28 H 1.48497 * 109.47123 * 239.99909 * 25 23 21 29 29 H 1.08997 * 109.47325 * 300.35812 * 1 2 3 30 30 H 1.08999 * 109.47289 * 60.35997 * 1 2 3 31 31 H 1.08997 * 109.47190 * 180.35538 * 1 2 3 32 32 H 1.09007 * 110.84889 * 100.19692 * 4 2 1 33 33 H 1.09000 * 110.67030 * 337.05278 * 4 2 1 34 34 H 0.96998 * 120.00487 * 18.64784 * 7 5 4 35 35 H 1.07999 * 120.41508 * 180.27684 * 10 9 8 36 36 H 1.08007 * 120.41551 * 179.97438 * 13 11 10 37 37 H 1.08998 * 110.36455 * 204.15447 * 15 5 4 38 38 H 1.08991 * 110.46486 * 81.87299 * 15 5 4 39 39 H 1.09005 * 109.47403 * 300.00056 * 19 17 16 40 40 H 1.09002 * 109.47422 * 60.00295 * 19 17 16 41 41 H 0.97005 * 120.00072 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7479 -1.2427 5 6 3.2864 -1.5184 -0.6915 6 1 3.4807 -2.4157 -1.2791 7 7 4.4698 -0.6562 -0.6463 8 6 5.7333 -1.2181 -0.5623 9 7 5.8524 -2.5366 -0.5181 10 6 7.0440 -3.1064 -0.4426 11 6 8.1756 -2.3042 -0.3988 12 9 9.4078 -2.8521 -0.3160 13 6 8.0133 -0.9266 -0.4417 14 7 6.7924 -0.4235 -0.5220 15 6 2.8099 -1.8826 0.7368 16 7 2.0300 -0.7141 1.1839 17 6 1.8074 -0.3620 2.4657 18 8 1.1517 0.6265 2.7179 19 6 2.3783 -1.1934 3.5854 20 16 1.9075 -0.4684 5.1758 21 6 2.6842 -1.6073 6.2732 22 1 3.2423 -2.4431 5.8777 23 6 2.5787 -1.4303 7.6458 24 7 1.8989 -0.4114 8.1276 25 14 3.4027 -2.6373 8.8092 26 1 4.1000 -3.6860 8.0221 27 1 4.3872 -1.9160 9.6551 28 1 2.3755 -3.2699 9.6751 29 1 -0.3634 0.5194 0.8867 30 1 -0.3634 0.5082 -0.8932 31 1 -0.3633 -1.0276 0.0064 32 1 2.3597 -0.0450 -2.0192 33 1 1.3066 -1.4405 -1.6225 34 1 4.3688 0.3080 -0.6753 35 1 7.1347 -4.1821 -0.4114 36 1 8.8728 -0.2734 -0.4092 37 1 3.6655 -2.0413 1.3932 38 1 2.1805 -2.7722 0.7134 39 1 1.9878 -2.2089 3.5196 40 1 3.4650 -1.2160 3.5036 41 1 1.8255 -0.2875 9.0869 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123156046.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:29 Heat of formation + Delta-G solvation = -37.372427 kcal Electronic energy + Delta-G solvation = -26659.113334 eV Core-core repulsion = 22614.449614 eV Total energy + Delta-G solvation = -4044.663721 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.83280 -42.03733 -41.22228 -38.96729 -36.05624 -34.86624 -34.63214 -33.37729 -32.07934 -30.34771 -29.77583 -27.71218 -26.95142 -26.00733 -24.58172 -23.57147 -21.93857 -20.39344 -19.62227 -19.45068 -19.04030 -18.40127 -18.11119 -17.26132 -17.01582 -16.92566 -16.59740 -16.19016 -15.94212 -15.81776 -15.44316 -15.14524 -15.06767 -14.78139 -14.47669 -14.19161 -14.07419 -13.86864 -13.61271 -13.28806 -13.20409 -13.05585 -12.94150 -12.80542 -12.61167 -12.45959 -12.20976 -12.04069 -11.78359 -11.75646 -11.35564 -11.19695 -10.88656 -10.34152 -10.20570 -9.74901 -9.05389 -8.72547 -8.38990 -6.17960 -0.07103 -0.03571 1.20184 1.38204 1.41288 1.53751 1.54622 1.72306 2.05834 2.23038 2.66715 2.95153 2.98394 3.05678 3.18303 3.41371 3.45744 3.61538 3.82513 3.84534 3.89549 3.95730 4.14393 4.18216 4.34332 4.38266 4.44014 4.60232 4.65571 4.70605 4.80514 4.85342 4.93900 5.11670 5.27142 5.32663 5.36785 5.50304 5.62756 5.93683 6.15285 6.29776 6.35707 7.02099 7.11660 7.13742 8.70662 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.008432 B = 0.003471 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3319.824683 B = 8064.245717 C =10778.407484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.125 3.875 3 H 0.064 0.936 4 C -0.114 4.114 5 C 0.158 3.842 6 H 0.134 0.866 7 N -0.681 5.681 8 C 0.547 3.453 9 N -0.551 5.551 10 C 0.175 3.825 11 C -0.080 4.080 12 F -0.129 7.129 13 C 0.171 3.829 14 N -0.569 5.569 15 C 0.083 3.917 16 N -0.609 5.609 17 C 0.548 3.452 18 O -0.559 6.559 19 C -0.119 4.119 20 S -0.145 6.145 21 C -0.548 4.548 22 H 0.078 0.922 23 C 0.016 3.984 24 N -0.910 5.910 25 Si 0.999 3.001 26 H -0.259 1.259 27 H -0.272 1.272 28 H -0.270 1.270 29 H 0.030 0.970 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.113 0.887 33 H 0.124 0.876 34 H 0.417 0.583 35 H 0.207 0.793 36 H 0.201 0.799 37 H 0.062 0.938 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.872 -7.096 -26.617 28.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.022 3.978 3 H 0.082 0.918 4 C -0.151 4.151 5 C 0.053 3.947 6 H 0.151 0.849 7 N -0.317 5.317 8 C 0.190 3.810 9 N -0.273 5.273 10 C 0.006 3.994 11 C -0.108 4.108 12 F -0.108 7.108 13 C 0.002 3.998 14 N -0.291 5.291 15 C -0.041 4.041 16 N -0.344 5.344 17 C 0.335 3.665 18 O -0.437 6.437 19 C -0.270 4.270 20 S 0.083 5.917 21 C -0.696 4.696 22 H 0.096 0.904 23 C -0.189 4.189 24 N -0.546 5.546 25 Si 0.820 3.180 26 H -0.182 1.182 27 H -0.198 1.198 28 H -0.195 1.195 29 H 0.049 0.951 30 H 0.110 0.890 31 H 0.083 0.917 32 H 0.132 0.868 33 H 0.142 0.858 34 H 0.255 0.745 35 H 0.224 0.776 36 H 0.217 0.783 37 H 0.080 0.920 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.109 0.891 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.744 -5.236 -26.110 27.471 hybrid contribution 2.134 -1.369 1.187 2.800 sum 8.878 -6.605 -24.923 27.269 Atomic orbital electron populations 1.22085 0.94475 1.02626 1.02405 1.21805 0.95098 0.96356 0.84497 0.91788 1.23090 0.96089 1.00631 0.95339 1.22135 0.83300 0.95057 0.94259 0.84866 1.44210 1.00269 1.09636 1.77565 1.19620 0.87138 0.85606 0.88623 1.68037 1.26905 1.10503 1.21872 1.23627 0.84913 1.02564 0.88289 1.19182 0.82400 0.94222 1.14985 1.91518 1.39082 1.85689 1.94543 1.23524 0.95169 0.92334 0.88772 1.67989 0.98772 1.40137 1.22209 1.23053 0.95325 0.88783 0.96929 1.48504 1.52885 1.29200 1.03859 1.19605 0.79564 0.84431 0.82858 1.90675 1.41095 1.28396 1.83578 1.23283 1.03751 1.02967 0.97000 1.85504 1.70988 1.39738 0.95504 1.23195 1.38716 1.13899 0.93788 0.90368 1.26114 0.95610 0.97973 0.99189 1.70181 1.40078 1.30142 1.14205 0.84914 0.78007 0.77680 0.77400 1.18231 1.19772 1.19545 0.95101 0.88973 0.91653 0.86835 0.85754 0.74496 0.77618 0.78250 0.91970 0.88106 0.87978 0.89116 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 9.11 71.98 0.66 -2.63 16 2 C 0.12 2.49 3.45 45.35 0.16 2.65 16 3 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 4 C -0.11 -1.09 6.05 31.79 0.19 -0.89 16 5 C 0.16 2.07 3.32 46.39 0.15 2.23 16 6 H 0.13 1.36 7.67 -2.39 -0.02 1.34 16 7 N -0.68 -11.41 5.38 -323.78 -1.74 -13.15 16 8 C 0.55 10.93 8.43 261.45 2.20 13.13 16 9 N -0.55 -10.00 9.29 -197.77 -1.84 -11.83 16 10 C 0.18 2.61 11.29 84.75 0.96 3.57 16 11 C -0.08 -1.29 7.38 22.53 0.17 -1.12 16 12 F -0.13 -2.12 17.30 44.97 0.78 -1.34 16 13 C 0.17 2.85 11.29 84.75 0.96 3.80 16 14 N -0.57 -11.86 10.46 -197.78 -2.07 -13.93 16 15 C 0.08 1.63 6.38 86.86 0.55 2.18 16 16 N -0.61 -16.38 3.06 -788.04 -2.41 -18.79 16 17 C 0.55 21.53 7.66 87.65 0.67 22.21 16 18 O -0.56 -26.72 14.92 -3.01 -0.04 -26.77 16 19 C -0.12 -5.10 5.16 71.23 0.37 -4.73 16 20 S -0.14 -8.31 20.57 -56.49 -1.16 -9.47 16 21 C -0.55 -32.24 9.50 67.95 0.65 -31.59 16 22 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 23 C 0.02 0.93 5.49 84.86 0.47 1.40 16 24 N -0.91 -56.60 13.22 21.65 0.29 -56.32 16 25 Si 1.00 44.34 29.55 68.60 2.03 46.37 16 26 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 27 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 28 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 29 H 0.03 0.92 6.90 -2.39 -0.02 0.90 16 30 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.12 0.66 7.85 -2.39 -0.02 0.64 16 34 H 0.42 6.92 8.73 -92.71 -0.81 6.11 16 35 H 0.21 1.70 8.06 -2.91 -0.02 1.67 16 36 H 0.20 2.13 8.06 -2.91 -0.02 2.11 16 37 H 0.06 1.49 7.48 -2.39 -0.02 1.47 16 38 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.10 4.03 8.14 -2.39 -0.02 4.01 16 40 H 0.09 3.75 7.85 -2.39 -0.02 3.73 16 41 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 Total: -1.00 -81.84 367.15 2.23 -79.60 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.26 Total: 15.44 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 8.15 Total: 10.19 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -7.78 Total: -114.02 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.04 Total: -26.77 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.78 Total: -1.34 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: -8.31 SS G_CDS: -1.16 Total: -9.47 kcal Total: -81.84 2.23 -79.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123156046.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.231 kcal (2) G-P(sol) polarization free energy of solvation -81.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds