Wall clock time and date at job start Sat Apr 11 2020 05:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.99566 * 2 1 4 4 C 1.54328 * 109.88067 * 121.09210 * 2 1 3 5 5 C 1.55153 * 102.94088 * 141.60779 * 4 2 1 6 6 H 1.09008 * 111.00295 * 82.57354 * 5 4 2 7 7 N 1.46494 * 111.00889 * 206.42485 * 5 4 2 8 8 C 1.39156 * 120.00300 * 205.00133 * 7 5 4 9 9 C 1.39213 * 120.06001 * 0.02562 * 8 7 5 10 10 N 1.32010 * 119.92928 * 179.97438 * 9 8 7 11 11 C 1.32405 * 120.05602 * 0.02562 * 10 9 8 12 12 F 1.35098 * 119.93598 * 180.02562 * 11 10 9 13 13 C 1.38467 * 120.12210 * 359.97438 * 11 10 9 14 14 N 1.32212 * 120.06968 * 359.72600 * 13 11 10 15 15 C 1.55129 * 101.48883 * 324.33753 * 5 4 2 16 16 N 1.47020 * 109.88165 * 238.90431 * 2 1 3 17 17 C 1.34778 * 125.65201 * 61.60275 * 16 2 1 18 18 O 1.21283 * 119.99681 * 0.02562 * 17 16 2 19 19 C 1.50696 * 119.99844 * 179.97438 * 17 16 2 20 20 S 1.81002 * 109.46649 * 180.02562 * 19 17 16 21 21 C 1.76199 * 99.99815 * 180.02562 * 20 19 17 22 22 H 1.08002 * 120.00460 * 0.02562 * 21 20 19 23 23 C 1.38805 * 119.99941 * 180.02562 * 21 20 19 24 24 N 1.31627 * 120.00247 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99893 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46845 * 90.00333 * 25 23 21 27 27 H 1.48503 * 109.47399 * 209.99822 * 25 23 21 28 28 H 1.48498 * 109.47295 * 330.00429 * 25 23 21 29 29 H 1.08998 * 109.47304 * 179.64163 * 1 2 3 30 30 H 1.09003 * 109.46938 * 299.64439 * 1 2 3 31 31 H 1.09001 * 109.46791 * 59.64238 * 1 2 3 32 32 H 1.08993 * 110.72084 * 259.97263 * 4 2 1 33 33 H 1.09005 * 110.71618 * 23.24852 * 4 2 1 34 34 H 0.96994 * 119.99727 * 25.00329 * 7 5 4 35 35 H 1.07994 * 120.03062 * 359.97438 * 9 8 7 36 36 H 1.08001 * 119.96481 * 180.02562 * 13 11 10 37 37 H 1.08999 * 110.49391 * 278.45089 * 15 5 4 38 38 H 1.08996 * 110.34976 * 156.05495 * 15 5 4 39 39 H 1.09006 * 109.46936 * 60.00912 * 19 17 16 40 40 H 1.08998 * 109.47807 * 300.00056 * 19 17 16 41 41 H 0.97000 * 119.99573 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 1.2428 5 6 3.2876 -1.5143 0.6925 6 1 4.1654 -0.8688 0.6605 7 7 3.5531 -2.7195 1.4817 8 6 4.8369 -3.2550 1.5236 9 6 5.8698 -2.6461 0.8163 10 7 7.0868 -3.1560 0.8583 11 6 7.3250 -4.2457 1.5716 12 9 8.5714 -4.7652 1.6133 13 6 6.2992 -4.8532 2.2759 14 7 5.0798 -4.3433 2.2422 15 6 2.8099 -1.8825 -0.7367 16 7 2.0300 -0.7141 -1.1839 17 6 1.8074 -0.3621 -2.4657 18 8 1.1435 0.6210 -2.7180 19 6 2.3843 -1.1896 -3.5853 20 16 1.9131 -0.4648 -5.1756 21 6 2.6970 -1.5989 -6.2728 22 1 3.2575 -2.4332 -5.8775 23 6 2.5942 -1.4202 -7.6455 24 7 1.9116 -0.4032 -8.1275 25 14 3.4259 -2.6221 -8.8087 26 1 2.4879 -3.7268 -9.1327 27 1 3.8101 -1.9168 -10.0578 28 1 4.6407 -3.1782 -8.1605 29 1 -0.3634 -1.0276 -0.0064 30 1 -0.3633 0.5083 0.8932 31 1 -0.3633 0.5194 -0.8868 32 1 2.3529 -0.0459 2.0201 33 1 1.3050 -1.4459 1.6183 34 1 2.8341 -3.1443 1.9751 35 1 5.6757 -1.7575 0.2341 36 1 6.4964 -5.7417 2.8574 37 1 2.1802 -2.7718 -0.7113 38 1 3.6655 -2.0412 -1.3931 39 1 1.9987 -2.2071 -3.5209 40 1 3.4709 -1.2067 -3.5020 41 1 1.4801 0.2211 -7.5234 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123157905.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:38 Heat of formation + Delta-G solvation = -17.238483 kcal Electronic energy + Delta-G solvation = -26322.005131 eV Core-core repulsion = 22278.214483 eV Total energy + Delta-G solvation = -4043.790647 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.27208 -41.53385 -40.31527 -38.00650 -35.87327 -34.58557 -32.56396 -32.41922 -31.20441 -29.19248 -28.74934 -26.29568 -25.54644 -24.89100 -24.12889 -22.43701 -21.63121 -19.28118 -18.89715 -18.43737 -18.24756 -18.01003 -17.06421 -16.63343 -16.42445 -15.66996 -15.37732 -15.16640 -14.90943 -14.60340 -14.37095 -14.10667 -13.96031 -13.86512 -13.74300 -13.34115 -13.29351 -12.77562 -12.48460 -12.35350 -12.31064 -12.13495 -11.99527 -11.81280 -11.74611 -11.36963 -11.19488 -10.93033 -10.74609 -10.20837 -9.73562 -9.62861 -9.57525 -9.04452 -8.77620 -8.36877 -8.27046 -6.72003 -6.65498 -4.04102 0.29335 0.62441 2.15868 2.71121 2.85744 3.07547 3.12224 3.29610 3.36691 3.39545 3.54533 3.74331 3.79229 3.94536 4.05866 4.21656 4.25360 4.40402 4.63497 4.67066 4.73909 4.85038 4.92980 5.10835 5.17091 5.19405 5.28094 5.31519 5.37778 5.41391 5.47362 5.68973 5.78115 5.85391 5.93664 6.05754 6.10876 6.31538 6.74592 6.81159 7.26803 7.41830 7.89069 8.34208 8.46927 9.23405 10.78496 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.009207 B = 0.002966 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3040.348610 B = 9437.518211 C =12100.655163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.138 3.862 3 H 0.081 0.919 4 C -0.131 4.131 5 C 0.135 3.865 6 H 0.107 0.893 7 N -0.697 5.697 8 C 0.350 3.650 9 C 0.032 3.968 10 N -0.427 5.427 11 C 0.187 3.813 12 F -0.108 7.108 13 C 0.097 3.903 14 N -0.478 5.478 15 C 0.085 3.915 16 N -0.621 5.621 17 C 0.551 3.449 18 O -0.509 6.509 19 C -0.126 4.126 20 S -0.115 6.115 21 C -0.608 4.608 22 H 0.066 0.934 23 C 0.036 3.964 24 N -0.884 5.884 25 Si 1.086 2.914 26 H -0.284 1.284 27 H -0.279 1.279 28 H -0.287 1.287 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.412 0.588 35 H 0.176 0.824 36 H 0.182 0.818 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.554 -6.333 26.225 27.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.034 3.966 3 H 0.099 0.901 4 C -0.169 4.169 5 C 0.028 3.972 6 H 0.125 0.875 7 N -0.330 5.330 8 C 0.111 3.889 9 C -0.137 4.137 10 N -0.146 5.146 11 C 0.030 3.970 12 F -0.088 7.088 13 C -0.066 4.066 14 N -0.199 5.199 15 C -0.040 4.040 16 N -0.359 5.359 17 C 0.339 3.661 18 O -0.382 6.382 19 C -0.277 4.277 20 S 0.112 5.888 21 C -0.756 4.756 22 H 0.084 0.916 23 C -0.174 4.174 24 N -0.518 5.518 25 Si 0.912 3.088 26 H -0.210 1.210 27 H -0.204 1.204 28 H -0.213 1.213 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.250 0.750 35 H 0.193 0.807 36 H 0.199 0.801 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.838 -5.026 24.064 24.881 hybrid contribution 0.661 -1.387 2.074 2.581 sum 4.499 -6.413 26.137 27.286 Atomic orbital electron populations 1.22153 0.94305 1.02446 1.03302 1.21481 0.95195 0.96527 0.83354 0.90071 1.23024 0.96433 0.99817 0.97633 1.22302 0.99345 0.85370 0.90136 0.87479 1.44311 1.06490 1.29195 1.52985 1.19360 0.87724 0.90255 0.91594 1.23025 0.86262 1.02174 1.02236 1.67617 1.22789 1.09026 1.15139 1.18817 0.82369 0.94541 1.01265 1.91633 1.37923 1.84342 1.94871 1.23288 0.86583 0.99788 0.96907 1.68006 1.21220 1.10687 1.20032 1.22791 0.96456 0.89756 0.95005 1.48475 1.54119 1.28354 1.04986 1.19987 0.79790 0.85014 0.81309 1.90709 1.38333 1.26784 1.82379 1.23317 1.03760 1.02397 0.98268 1.84815 1.70723 1.39527 0.93773 1.23718 1.41414 1.15369 0.95066 0.91587 1.26053 0.96046 0.99397 0.95945 1.70775 1.29267 1.12797 1.38947 0.83300 0.75667 0.74576 0.75246 1.21034 1.20448 1.21254 0.92498 0.91754 0.90575 0.88944 0.89442 0.75006 0.80673 0.80104 0.90585 0.89781 0.89101 0.89013 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.10 37.16 0.34 -1.30 16 2 C 0.14 1.30 3.46 -66.95 -0.23 1.07 16 3 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.13 -0.70 6.12 -24.90 -0.15 -0.85 16 5 C 0.14 0.80 3.16 -65.67 -0.21 0.59 16 6 H 0.11 0.57 6.35 -51.92 -0.33 0.24 16 7 N -0.70 -4.02 5.37 -51.62 -0.28 -4.30 16 8 C 0.35 2.78 7.67 -154.62 -1.19 1.59 16 9 C 0.03 0.28 10.40 -17.11 -0.18 0.10 16 10 N -0.43 -4.68 10.50 -13.24 -0.14 -4.82 16 11 C 0.19 1.83 8.43 -17.22 -0.15 1.68 16 12 F -0.11 -1.10 17.29 2.25 0.04 -1.06 16 13 C 0.10 0.75 11.20 -17.30 -0.19 0.55 16 14 N -0.48 -4.06 10.53 -12.16 -0.13 -4.19 16 15 C 0.09 0.76 6.39 -2.41 -0.02 0.74 16 16 N -0.62 -7.59 3.06 -162.87 -0.50 -8.09 16 17 C 0.55 9.74 7.66 -10.99 -0.08 9.66 16 18 O -0.51 -10.86 14.90 5.55 0.08 -10.78 16 19 C -0.13 -2.49 5.16 36.00 0.19 -2.31 16 20 S -0.11 -3.04 19.60 -107.50 -2.11 -5.14 16 21 C -0.61 -17.37 9.50 30.94 0.29 -17.07 16 22 H 0.07 1.82 7.80 -52.49 -0.41 1.41 16 23 C 0.04 1.05 5.49 -17.43 -0.10 0.95 16 24 N -0.88 -27.33 13.67 55.49 0.76 -26.58 16 25 Si 1.09 24.93 29.92 -169.99 -5.09 19.84 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 1.04 6.88 -51.93 -0.36 0.68 16 32 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.39 7.71 -51.93 -0.40 -0.01 16 34 H 0.41 1.96 8.69 -40.82 -0.35 1.61 16 35 H 0.18 1.21 6.17 -52.49 -0.32 0.88 16 36 H 0.18 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.78 7.48 -51.93 -0.39 0.39 16 39 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 40 H 0.09 1.69 7.85 -51.92 -0.41 1.28 16 41 H 0.28 8.76 7.12 -40.82 -0.29 8.47 16 LS Contribution 362.87 15.07 5.47 5.47 Total: -1.00 -35.90 362.87 -8.58 -44.48 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -5.02 Total: -0.25 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -1.67 Total: -4.59 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: -0.29 Total: -47.97 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.08 Total: -10.78 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.04 Total: -1.06 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -5.09 Total: 19.84 kcal Atomic # 16 Polarization: -3.04 SS G_CDS: -2.11 Total: -5.14 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.90 -8.58 -44.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123157905.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.240 kcal (2) G-P(sol) polarization free energy of solvation -35.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds