Wall clock time and date at job start Sat Apr 11 2020 05:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.99566 * 2 1 4 4 C 1.54328 * 109.88067 * 121.09210 * 2 1 3 5 5 C 1.55153 * 102.94088 * 141.60779 * 4 2 1 6 6 H 1.09008 * 111.00295 * 82.57354 * 5 4 2 7 7 N 1.46494 * 111.00889 * 206.42485 * 5 4 2 8 8 C 1.39156 * 120.00300 * 205.00133 * 7 5 4 9 9 C 1.39213 * 120.06001 * 0.02562 * 8 7 5 10 10 N 1.32010 * 119.92928 * 179.97438 * 9 8 7 11 11 C 1.32405 * 120.05602 * 0.02562 * 10 9 8 12 12 F 1.35098 * 119.93598 * 180.02562 * 11 10 9 13 13 C 1.38467 * 120.12210 * 359.97438 * 11 10 9 14 14 N 1.32212 * 120.06968 * 359.72600 * 13 11 10 15 15 C 1.55129 * 101.48883 * 324.33753 * 5 4 2 16 16 N 1.47020 * 109.88165 * 238.90431 * 2 1 3 17 17 C 1.34778 * 125.65201 * 61.60275 * 16 2 1 18 18 O 1.21283 * 119.99681 * 0.02562 * 17 16 2 19 19 C 1.50696 * 119.99844 * 179.97438 * 17 16 2 20 20 S 1.81002 * 109.46649 * 180.02562 * 19 17 16 21 21 C 1.76199 * 99.99815 * 180.02562 * 20 19 17 22 22 H 1.08002 * 120.00460 * 0.02562 * 21 20 19 23 23 C 1.38805 * 119.99941 * 180.02562 * 21 20 19 24 24 N 1.31627 * 120.00247 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99893 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46845 * 90.00333 * 25 23 21 27 27 H 1.48503 * 109.47399 * 209.99822 * 25 23 21 28 28 H 1.48498 * 109.47295 * 330.00429 * 25 23 21 29 29 H 1.08998 * 109.47304 * 179.64163 * 1 2 3 30 30 H 1.09003 * 109.46938 * 299.64439 * 1 2 3 31 31 H 1.09001 * 109.46791 * 59.64238 * 1 2 3 32 32 H 1.08993 * 110.72084 * 259.97263 * 4 2 1 33 33 H 1.09005 * 110.71618 * 23.24852 * 4 2 1 34 34 H 0.96994 * 119.99727 * 25.00329 * 7 5 4 35 35 H 1.07994 * 120.03062 * 359.97438 * 9 8 7 36 36 H 1.08001 * 119.96481 * 180.02562 * 13 11 10 37 37 H 1.08999 * 110.49391 * 278.45089 * 15 5 4 38 38 H 1.08996 * 110.34976 * 156.05495 * 15 5 4 39 39 H 1.09006 * 109.46936 * 60.00912 * 19 17 16 40 40 H 1.08998 * 109.47807 * 300.00056 * 19 17 16 41 41 H 0.97000 * 119.99573 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 1.2428 5 6 3.2876 -1.5143 0.6925 6 1 4.1654 -0.8688 0.6605 7 7 3.5531 -2.7195 1.4817 8 6 4.8369 -3.2550 1.5236 9 6 5.8698 -2.6461 0.8163 10 7 7.0868 -3.1560 0.8583 11 6 7.3250 -4.2457 1.5716 12 9 8.5714 -4.7652 1.6133 13 6 6.2992 -4.8532 2.2759 14 7 5.0798 -4.3433 2.2422 15 6 2.8099 -1.8825 -0.7367 16 7 2.0300 -0.7141 -1.1839 17 6 1.8074 -0.3621 -2.4657 18 8 1.1435 0.6210 -2.7180 19 6 2.3843 -1.1896 -3.5853 20 16 1.9131 -0.4648 -5.1756 21 6 2.6970 -1.5989 -6.2728 22 1 3.2575 -2.4332 -5.8775 23 6 2.5942 -1.4202 -7.6455 24 7 1.9116 -0.4032 -8.1275 25 14 3.4259 -2.6221 -8.8087 26 1 2.4879 -3.7268 -9.1327 27 1 3.8101 -1.9168 -10.0578 28 1 4.6407 -3.1782 -8.1605 29 1 -0.3634 -1.0276 -0.0064 30 1 -0.3633 0.5083 0.8932 31 1 -0.3633 0.5194 -0.8868 32 1 2.3529 -0.0459 2.0201 33 1 1.3050 -1.4459 1.6183 34 1 2.8341 -3.1443 1.9751 35 1 5.6757 -1.7575 0.2341 36 1 6.4964 -5.7417 2.8574 37 1 2.1802 -2.7718 -0.7113 38 1 3.6655 -2.0412 -1.3931 39 1 1.9987 -2.2071 -3.5209 40 1 3.4709 -1.2067 -3.5020 41 1 1.4801 0.2211 -7.5234 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123157905.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:37 Heat of formation + Delta-G solvation = -43.012783 kcal Electronic energy + Delta-G solvation = -26323.122788 eV Core-core repulsion = 22278.214483 eV Total energy + Delta-G solvation = -4044.908305 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.96921 -42.16670 -41.31284 -39.07578 -36.63676 -35.24283 -34.77152 -33.46278 -31.89027 -30.45145 -29.55585 -27.12433 -26.99561 -26.20167 -24.83424 -23.33464 -22.28189 -20.68668 -19.95298 -19.57487 -19.09369 -18.62777 -18.22651 -17.42311 -17.28428 -16.93770 -16.33539 -16.25472 -15.87596 -15.74605 -15.44973 -15.25546 -14.94468 -14.73049 -14.62540 -14.44852 -14.34413 -14.27847 -13.88030 -13.68367 -13.38332 -12.97878 -12.86549 -12.79727 -12.76730 -12.40421 -12.06981 -11.96373 -11.89270 -11.58219 -11.34773 -11.12632 -10.97240 -10.36996 -10.35371 -9.82612 -8.95782 -8.94579 -8.89488 -6.29997 -0.30837 -0.02941 1.11012 1.44790 1.49089 1.59302 1.60154 1.77957 2.05889 2.31341 2.45448 2.49699 3.00222 3.05118 3.14697 3.25081 3.35856 3.43055 3.65333 3.73667 3.88028 4.04033 4.07742 4.08460 4.12085 4.28515 4.34501 4.40814 4.51012 4.62916 4.69037 4.82802 4.87795 5.07034 5.18692 5.25617 5.42392 5.52715 5.61762 6.13322 6.17458 6.25301 6.26099 6.70782 7.01767 7.04098 8.49018 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.009207 B = 0.002966 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3040.348610 B = 9437.518211 C =12100.655163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.130 3.870 3 H 0.076 0.924 4 C -0.112 4.112 5 C 0.147 3.853 6 H 0.120 0.880 7 N -0.681 5.681 8 C 0.354 3.646 9 C 0.024 3.976 10 N -0.459 5.459 11 C 0.163 3.837 12 F -0.117 7.117 13 C 0.110 3.890 14 N -0.488 5.488 15 C 0.075 3.925 16 N -0.608 5.608 17 C 0.549 3.451 18 O -0.556 6.556 19 C -0.104 4.104 20 S -0.191 6.191 21 C -0.614 4.614 22 H 0.073 0.927 23 C -0.017 4.017 24 N -0.912 5.912 25 Si 1.137 2.863 26 H -0.267 1.267 27 H -0.278 1.278 28 H -0.264 1.264 29 H 0.060 0.940 30 H 0.092 0.908 31 H 0.032 0.968 32 H 0.120 0.880 33 H 0.106 0.894 34 H 0.421 0.579 35 H 0.190 0.810 36 H 0.213 0.787 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.190 -8.238 28.897 30.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.027 3.973 3 H 0.094 0.906 4 C -0.150 4.150 5 C 0.040 3.960 6 H 0.138 0.862 7 N -0.313 5.313 8 C 0.114 3.886 9 C -0.145 4.145 10 N -0.178 5.178 11 C 0.007 3.993 12 F -0.097 7.097 13 C -0.052 4.052 14 N -0.210 5.210 15 C -0.049 4.049 16 N -0.344 5.344 17 C 0.337 3.663 18 O -0.434 6.434 19 C -0.255 4.255 20 S 0.036 5.964 21 C -0.761 4.761 22 H 0.091 0.909 23 C -0.221 4.221 24 N -0.548 5.548 25 Si 0.955 3.045 26 H -0.192 1.192 27 H -0.203 1.203 28 H -0.189 1.189 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.051 0.949 32 H 0.138 0.862 33 H 0.124 0.876 34 H 0.261 0.739 35 H 0.206 0.794 36 H 0.230 0.770 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.470 -6.959 26.823 28.069 hybrid contribution 0.427 -0.800 1.403 1.671 sum 4.897 -7.759 28.226 29.680 Atomic orbital electron populations 1.22113 0.94709 1.02427 1.02599 1.21785 0.94980 0.96878 0.83652 0.90585 1.22987 0.96148 1.00098 0.95808 1.22203 1.00177 0.85454 0.88172 0.86247 1.44214 1.05962 1.28869 1.52301 1.19436 0.88190 0.89994 0.91009 1.23261 0.85910 1.02699 1.02663 1.67531 1.24133 1.09994 1.16138 1.19058 0.82681 0.95093 1.02517 1.91603 1.38538 1.84481 1.95044 1.23710 0.85651 0.99991 0.95842 1.68102 1.21408 1.11011 1.20493 1.23098 0.96172 0.88683 0.96968 1.48333 1.53060 1.29094 1.03896 1.19572 0.79666 0.84301 0.82752 1.90695 1.40591 1.28674 1.83430 1.23194 1.04716 1.02634 0.94978 1.85016 1.71567 1.41200 0.98610 1.24037 1.40974 1.15411 0.95716 0.90925 1.27792 0.95753 1.00170 0.98354 1.70891 1.31161 1.14005 1.38707 0.82706 0.75760 0.72785 0.73259 1.19238 1.20318 1.18850 0.92078 0.88887 0.94888 0.86187 0.87554 0.73933 0.79362 0.77050 0.89704 0.89981 0.87837 0.87509 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 9.10 71.98 0.66 -2.32 16 2 C 0.13 2.15 3.46 45.34 0.16 2.30 16 3 H 0.08 1.38 8.14 -2.38 -0.02 1.37 16 4 C -0.11 -0.70 6.12 31.78 0.19 -0.50 16 5 C 0.15 1.16 3.16 46.46 0.15 1.31 16 6 H 0.12 0.78 6.35 -2.38 -0.02 0.76 16 7 N -0.68 -5.16 5.37 -317.22 -1.70 -6.86 16 8 C 0.35 4.57 7.67 132.95 1.02 5.59 16 9 C 0.02 0.37 10.40 84.90 0.88 1.25 16 10 N -0.46 -9.58 10.50 -195.81 -2.06 -11.64 16 11 C 0.16 3.01 8.43 84.66 0.71 3.72 16 12 F -0.12 -2.32 17.29 44.97 0.78 -1.54 16 13 C 0.11 1.45 11.20 84.69 0.95 2.40 16 14 N -0.49 -6.91 10.53 -192.40 -2.03 -8.93 16 15 C 0.08 1.12 6.39 86.93 0.56 1.67 16 16 N -0.61 -13.92 3.06 -787.59 -2.41 -16.34 16 17 C 0.55 19.52 7.66 87.66 0.67 20.19 16 18 O -0.56 -24.67 14.90 -3.04 -0.05 -24.72 16 19 C -0.10 -4.09 5.16 71.23 0.37 -3.72 16 20 S -0.19 -10.45 19.60 -56.49 -1.11 -11.56 16 21 C -0.61 -35.44 9.50 67.96 0.65 -34.80 16 22 H 0.07 3.96 7.80 -2.91 -0.02 3.94 16 23 C -0.02 -1.01 5.49 84.86 0.47 -0.54 16 24 N -0.91 -57.95 13.67 21.65 0.30 -57.65 16 25 Si 1.14 49.58 29.92 68.60 2.05 51.63 16 26 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 27 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 28 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.03 0.91 6.88 -2.39 -0.02 0.89 16 32 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.11 0.36 7.71 -2.38 -0.02 0.34 16 34 H 0.42 2.11 8.69 -92.71 -0.81 1.31 16 35 H 0.19 2.15 6.17 -2.91 -0.02 2.13 16 36 H 0.21 1.23 8.06 -2.91 -0.02 1.21 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 1.30 7.48 -2.39 -0.02 1.29 16 39 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 40 H 0.11 3.85 7.85 -2.40 -0.02 3.83 16 41 H 0.26 17.23 7.12 -92.71 -0.66 16.56 16 Total: -1.00 -82.81 362.87 1.59 -81.22 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 0.39 Total: 9.82 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: 7.42 Total: -3.44 kcal Atomic # 7 Polarization: -93.52 SS G_CDS: -7.90 Total: -101.42 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.05 Total: -24.72 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.78 Total: -1.54 kcal Atomic # 14 Polarization: 49.58 SS G_CDS: 2.05 Total: 51.63 kcal Atomic # 16 Polarization: -10.45 SS G_CDS: -1.11 Total: -11.56 kcal Total: -82.81 1.59 -81.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123157905.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.206 kcal (2) G-P(sol) polarization free energy of solvation -82.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds