Wall clock time and date at job start Sat Apr 11 2020 05:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46893 * 111.00053 * 2 1 4 4 C 1.53003 * 109.47197 * 66.05043 * 3 2 1 5 5 C 1.52999 * 109.47438 * 180.02562 * 4 3 2 6 6 F 1.39906 * 109.47058 * 59.99765 * 5 4 3 7 7 F 1.39900 * 109.47283 * 179.97438 * 5 4 3 8 8 F 1.39903 * 109.47051 * 300.00051 * 5 4 3 9 9 C 1.46904 * 110.99725 * 236.04977 * 2 1 3 10 10 H 1.09002 * 110.88699 * 64.65391 * 9 2 1 11 11 C 1.55156 * 111.00397 * 300.76978 * 9 2 1 12 12 C 1.54324 * 102.94374 * 206.38649 * 11 9 2 13 13 N 1.47019 * 107.27118 * 22.19456 * 12 11 9 14 14 C 1.34776 * 125.65091 * 181.08861 * 13 12 11 15 15 O 1.21286 * 119.99996 * 179.97438 * 14 13 12 16 16 C 1.50699 * 119.99800 * 359.97438 * 14 13 12 17 17 S 1.81002 * 109.47025 * 179.97438 * 16 14 13 18 18 C 1.76205 * 99.99887 * 180.02562 * 17 16 14 19 19 H 1.08003 * 120.00015 * 359.97438 * 18 17 16 20 20 C 1.38798 * 119.99850 * 180.02562 * 18 17 16 21 21 N 1.31634 * 120.00158 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 119.99978 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47161 * 59.99548 * 22 20 18 24 24 H 1.48498 * 109.47195 * 180.02562 * 22 20 18 25 25 H 1.48508 * 109.47122 * 300.00085 * 22 20 18 26 26 C 1.47536 * 108.71308 * 1.05881 * 13 12 11 27 27 H 1.08998 * 109.46920 * 183.94908 * 1 2 3 28 28 H 1.08994 * 109.46846 * 303.95113 * 1 2 3 29 29 H 1.08998 * 109.47009 * 63.95154 * 1 2 3 30 30 H 1.08997 * 109.47380 * 186.04481 * 3 2 1 31 31 H 1.09005 * 109.47821 * 306.04804 * 3 2 1 32 32 H 1.09003 * 109.46878 * 299.99737 * 4 3 2 33 33 H 1.08994 * 109.47362 * 59.99817 * 4 3 2 34 34 H 1.09001 * 110.72614 * 324.75382 * 11 9 2 35 35 H 1.09000 * 110.71772 * 87.84882 * 11 9 2 36 36 H 1.09000 * 109.88303 * 141.61267 * 12 11 9 37 37 H 1.09005 * 109.88534 * 262.62580 * 12 11 9 38 38 H 1.08999 * 109.47091 * 299.99831 * 16 14 13 39 39 H 1.09006 * 109.47153 * 59.99730 * 16 14 13 40 40 H 0.96993 * 119.99818 * 180.02562 * 21 20 18 41 41 H 1.09008 * 110.40688 * 217.04500 * 26 13 12 42 42 H 1.08997 * 110.36984 * 94.69142 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0574 1.3183 5 6 2.1793 3.4860 1.3181 6 9 1.6213 4.1992 0.2517 7 9 1.8461 4.1134 2.5233 8 9 3.5710 3.4518 1.1788 9 6 1.9954 -0.7659 -1.1377 10 1 1.7277 -0.2923 -2.0822 11 6 1.5029 -2.2366 -1.0936 12 6 2.6107 -2.9951 -1.8545 13 7 3.8238 -2.1664 -1.7997 14 6 5.0085 -2.4696 -2.3662 15 8 5.9458 -1.7077 -2.2567 16 6 5.1686 -3.7555 -3.1356 17 16 6.8600 -3.8727 -3.7694 18 6 6.7680 -5.4229 -4.6021 19 1 5.8438 -5.9817 -4.6023 20 6 7.8835 -5.9262 -5.2568 21 7 9.0100 -5.2453 -5.2562 22 14 7.7861 -7.5699 -6.1389 23 1 6.7482 -7.5022 -7.1988 24 1 9.1019 -7.8808 -6.7531 25 1 7.4310 -8.6338 -5.1656 26 6 3.5295 -0.9473 -1.0227 27 1 -0.3633 -1.0252 0.0708 28 1 -0.3633 0.5739 0.8524 29 1 -0.3633 0.4513 -0.9233 30 1 3.0797 1.3444 -0.1082 31 1 1.5611 1.9274 -0.8309 32 1 0.5473 2.0844 1.4266 33 1 2.0659 1.5015 2.1492 34 1 1.4313 -2.5887 -0.0645 35 1 0.5439 -2.3375 -1.6017 36 1 2.7969 -3.9569 -1.3765 37 1 2.3102 -3.1485 -2.8910 38 1 4.9677 -4.6004 -2.4770 39 1 4.4667 -3.7698 -3.9694 40 1 9.7895 -5.5970 -5.7141 41 1 4.0463 -0.0888 -1.4520 42 1 3.8185 -1.0827 0.0196 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188959298.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:42 Heat of formation + Delta-G solvation = -183.001859 kcal Electronic energy + Delta-G solvation = -27095.908002 eV Core-core repulsion = 22594.240129 eV Total energy + Delta-G solvation = -4501.667873 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.46786 -47.97953 -47.93009 -40.12435 -38.40362 -36.33946 -32.94709 -32.43028 -30.80615 -29.88084 -28.34938 -26.86460 -25.50572 -24.54172 -23.25888 -21.99299 -20.59690 -19.35086 -18.92423 -18.74543 -17.94578 -17.65555 -16.91103 -16.60724 -15.74629 -15.32432 -15.16765 -14.89260 -14.80796 -14.72358 -14.53271 -14.41447 -14.34183 -14.08836 -14.08325 -13.85563 -13.71274 -13.47596 -12.95701 -12.72983 -12.64504 -12.53118 -12.28372 -12.13586 -11.94502 -11.80416 -11.42710 -11.21064 -11.13302 -11.03999 -11.03846 -10.77324 -9.83001 -9.43522 -9.06063 -8.95164 -8.53065 -8.24136 -6.50639 -6.21539 -3.92491 2.30634 2.79976 3.04337 3.16810 3.23209 3.27100 3.29780 3.52295 3.60616 3.64150 3.77294 4.08752 4.20490 4.32881 4.40844 4.46227 4.72140 4.78303 4.87530 4.94282 4.98514 5.07921 5.09493 5.13427 5.26769 5.27995 5.44064 5.45651 5.50446 5.59985 5.68649 5.73862 5.77982 5.92960 6.13025 6.32403 6.41964 6.53805 7.58854 7.64014 8.34860 8.53708 9.23403 10.85853 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.023796 B = 0.002007 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.392958 B =13947.030427 C =14878.411924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.527 5.527 3 C 0.046 3.954 4 C -0.164 4.164 5 C 0.453 3.547 6 F -0.185 7.185 7 F -0.185 7.185 8 F -0.180 7.180 9 C 0.068 3.932 10 H 0.063 0.937 11 C -0.121 4.121 12 C 0.104 3.896 13 N -0.626 5.626 14 C 0.549 3.451 15 O -0.514 6.514 16 C -0.146 4.146 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.117 3.883 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.031 0.969 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.109 0.891 33 H 0.120 0.880 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.269 0.731 41 H 0.076 0.924 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.671 13.108 13.736 29.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.251 5.251 3 C -0.082 4.082 4 C -0.202 4.202 5 C 0.399 3.601 6 F -0.167 7.167 7 F -0.166 7.166 8 F -0.161 7.161 9 C -0.041 4.041 10 H 0.081 0.919 11 C -0.159 4.159 12 C -0.020 4.020 13 N -0.364 5.364 14 C 0.338 3.662 15 O -0.388 6.388 16 C -0.296 4.296 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.007 4.007 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.049 0.951 30 H 0.112 0.888 31 H 0.070 0.930 32 H 0.127 0.873 33 H 0.139 0.861 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.818 14.020 14.218 28.846 hybrid contribution -1.443 -1.294 -1.396 2.388 sum -22.261 12.727 12.822 28.670 Atomic orbital electron populations 1.22511 0.86696 1.03047 1.00849 1.61907 1.08264 1.12175 1.42754 1.22113 1.02285 0.89089 0.94722 1.22880 1.04626 0.89625 1.03087 1.20544 0.76207 0.90023 0.73368 1.93192 1.85140 1.81231 1.57120 1.93196 1.92259 1.84897 1.46271 1.93224 1.30574 1.96885 1.95460 1.22833 0.95122 0.94278 0.91908 0.91928 1.22702 0.97912 0.93304 1.02008 1.21973 0.84340 0.94908 1.00805 1.48438 1.11154 1.21828 1.55009 1.20042 0.80350 0.87745 0.78111 1.90717 1.38126 1.50799 1.59169 1.23500 1.07906 0.96395 1.01847 1.85416 1.03096 1.28035 1.66854 1.22814 1.00473 1.06049 1.39029 0.90976 1.24995 0.94503 0.98219 0.95878 1.70009 1.01331 1.37889 1.41035 0.86220 0.77535 0.82203 0.79514 1.19944 1.20808 1.19929 1.22109 0.93076 0.88587 0.96918 0.90492 0.91041 0.95087 0.88803 0.93046 0.87253 0.86148 0.89320 0.90109 0.90928 0.91204 0.89244 0.89311 0.92113 0.90569 0.90508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.14 60.07 0.55 0.63 16 2 N -0.53 -3.56 4.66 -232.31 -1.08 -4.64 16 3 C 0.05 0.31 4.61 -3.83 -0.02 0.29 16 4 C -0.16 -0.85 5.19 -26.73 -0.14 -0.99 16 5 C 0.45 3.32 3.16 37.16 0.12 3.44 16 6 F -0.19 -1.54 16.80 2.25 0.04 -1.50 16 7 F -0.18 -1.48 17.32 2.25 0.04 -1.44 16 8 F -0.18 -1.65 16.80 2.25 0.04 -1.62 16 9 C 0.07 0.56 2.71 -65.56 -0.18 0.38 16 10 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 11 C -0.12 -0.88 5.23 -24.90 -0.13 -1.01 16 12 C 0.10 1.05 6.49 -3.07 -0.02 1.03 16 13 N -0.63 -8.92 3.33 -170.43 -0.57 -9.48 16 14 C 0.55 10.62 7.87 -10.99 -0.09 10.54 16 15 O -0.51 -12.01 16.12 5.55 0.09 -11.92 16 16 C -0.15 -2.99 5.35 36.01 0.19 -2.80 16 17 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 18 C -0.54 -15.25 9.50 30.94 0.29 -14.95 16 19 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 20 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.20 13.22 55.49 0.73 -25.47 16 22 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 C 0.12 1.38 5.47 -2.47 -0.01 1.36 16 27 H 0.08 0.33 7.10 -51.93 -0.37 -0.04 16 28 H 0.07 0.26 6.30 -51.93 -0.33 -0.07 16 29 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.09 0.74 6.46 -51.93 -0.34 0.40 16 31 H 0.05 0.34 7.78 -51.93 -0.40 -0.06 16 32 H 0.11 0.39 6.47 -51.93 -0.34 0.05 16 33 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.44 8.08 -51.93 -0.42 0.02 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 39 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 40 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.08 0.99 7.69 -51.92 -0.40 0.59 16 42 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 369.17 15.07 5.56 5.56 Total: -1.00 -34.53 369.17 -7.85 -42.39 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -5.94 Total: -4.27 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 0.47 Total: -0.07 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: -0.92 Total: -39.59 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.09 Total: -11.92 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 0.11 Total: -4.56 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.53 -7.85 -42.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188959298.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.616 kcal (2) G-P(sol) polarization free energy of solvation -34.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds