Wall clock time and date at job start Sat Apr 11 2020 05:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46893 * 111.00053 * 2 1 4 4 C 1.53003 * 109.47197 * 66.05043 * 3 2 1 5 5 C 1.52999 * 109.47438 * 180.02562 * 4 3 2 6 6 F 1.39906 * 109.47058 * 59.99765 * 5 4 3 7 7 F 1.39900 * 109.47283 * 179.97438 * 5 4 3 8 8 F 1.39903 * 109.47051 * 300.00051 * 5 4 3 9 9 C 1.46904 * 110.99725 * 236.04977 * 2 1 3 10 10 H 1.09002 * 110.88699 * 64.65391 * 9 2 1 11 11 C 1.55156 * 111.00397 * 300.76978 * 9 2 1 12 12 C 1.54324 * 102.94374 * 206.38649 * 11 9 2 13 13 N 1.47019 * 107.27118 * 22.19456 * 12 11 9 14 14 C 1.34776 * 125.65091 * 181.08861 * 13 12 11 15 15 O 1.21286 * 119.99996 * 179.97438 * 14 13 12 16 16 C 1.50699 * 119.99800 * 359.97438 * 14 13 12 17 17 S 1.81002 * 109.47025 * 179.97438 * 16 14 13 18 18 C 1.76205 * 99.99887 * 180.02562 * 17 16 14 19 19 H 1.08003 * 120.00015 * 359.97438 * 18 17 16 20 20 C 1.38798 * 119.99850 * 180.02562 * 18 17 16 21 21 N 1.31634 * 120.00158 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 119.99978 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47161 * 59.99548 * 22 20 18 24 24 H 1.48498 * 109.47195 * 180.02562 * 22 20 18 25 25 H 1.48508 * 109.47122 * 300.00085 * 22 20 18 26 26 C 1.47536 * 108.71308 * 1.05881 * 13 12 11 27 27 H 1.08998 * 109.46920 * 183.94908 * 1 2 3 28 28 H 1.08994 * 109.46846 * 303.95113 * 1 2 3 29 29 H 1.08998 * 109.47009 * 63.95154 * 1 2 3 30 30 H 1.08997 * 109.47380 * 186.04481 * 3 2 1 31 31 H 1.09005 * 109.47821 * 306.04804 * 3 2 1 32 32 H 1.09003 * 109.46878 * 299.99737 * 4 3 2 33 33 H 1.08994 * 109.47362 * 59.99817 * 4 3 2 34 34 H 1.09001 * 110.72614 * 324.75382 * 11 9 2 35 35 H 1.09000 * 110.71772 * 87.84882 * 11 9 2 36 36 H 1.09000 * 109.88303 * 141.61267 * 12 11 9 37 37 H 1.09005 * 109.88534 * 262.62580 * 12 11 9 38 38 H 1.08999 * 109.47091 * 299.99831 * 16 14 13 39 39 H 1.09006 * 109.47153 * 59.99730 * 16 14 13 40 40 H 0.96993 * 119.99818 * 180.02562 * 21 20 18 41 41 H 1.09008 * 110.40688 * 217.04500 * 26 13 12 42 42 H 1.08997 * 110.36984 * 94.69142 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0574 1.3183 5 6 2.1793 3.4860 1.3181 6 9 1.6213 4.1992 0.2517 7 9 1.8461 4.1134 2.5233 8 9 3.5710 3.4518 1.1788 9 6 1.9954 -0.7659 -1.1377 10 1 1.7277 -0.2923 -2.0822 11 6 1.5029 -2.2366 -1.0936 12 6 2.6107 -2.9951 -1.8545 13 7 3.8238 -2.1664 -1.7997 14 6 5.0085 -2.4696 -2.3662 15 8 5.9458 -1.7077 -2.2567 16 6 5.1686 -3.7555 -3.1356 17 16 6.8600 -3.8727 -3.7694 18 6 6.7680 -5.4229 -4.6021 19 1 5.8438 -5.9817 -4.6023 20 6 7.8835 -5.9262 -5.2568 21 7 9.0100 -5.2453 -5.2562 22 14 7.7861 -7.5699 -6.1389 23 1 6.7482 -7.5022 -7.1988 24 1 9.1019 -7.8808 -6.7531 25 1 7.4310 -8.6338 -5.1656 26 6 3.5295 -0.9473 -1.0227 27 1 -0.3633 -1.0252 0.0708 28 1 -0.3633 0.5739 0.8524 29 1 -0.3633 0.4513 -0.9233 30 1 3.0797 1.3444 -0.1082 31 1 1.5611 1.9274 -0.8309 32 1 0.5473 2.0844 1.4266 33 1 2.0659 1.5015 2.1492 34 1 1.4313 -2.5887 -0.0645 35 1 0.5439 -2.3375 -1.6017 36 1 2.7969 -3.9569 -1.3765 37 1 2.3102 -3.1485 -2.8910 38 1 4.9677 -4.6004 -2.4770 39 1 4.4667 -3.7698 -3.9694 40 1 9.7895 -5.5970 -5.7141 41 1 4.0463 -0.0888 -1.4520 42 1 3.8185 -1.0827 0.0196 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188959298.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:41 Heat of formation + Delta-G solvation = -206.470902 kcal Electronic energy + Delta-G solvation = -27096.925696 eV Core-core repulsion = 22594.240129 eV Total energy + Delta-G solvation = -4502.685567 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.09751 -48.60404 -48.59102 -41.18776 -39.44082 -37.29395 -34.58890 -33.66609 -31.88964 -30.84979 -29.42371 -27.67768 -27.42778 -25.26084 -24.16650 -22.58034 -21.26819 -20.70433 -19.59330 -19.54488 -19.36503 -18.49768 -18.03093 -17.73187 -16.88394 -16.72533 -16.40385 -15.94956 -15.77075 -15.56306 -15.53111 -15.23820 -15.19652 -15.01183 -14.74720 -14.73566 -14.49872 -14.44479 -14.25622 -13.81826 -13.76462 -13.38213 -13.19394 -13.16314 -12.86651 -12.85485 -12.66419 -12.58769 -12.54141 -11.99490 -11.85494 -11.81193 -11.73810 -11.12843 -11.00633 -10.29340 -9.73306 -9.46720 -8.69063 -8.34577 -6.13827 1.22404 1.44139 1.44478 1.53538 1.54802 1.75472 2.03292 2.27299 2.61405 2.98711 2.99402 3.09001 3.17691 3.21516 3.41271 3.63412 3.84126 3.88443 3.94749 4.06638 4.20634 4.30704 4.32898 4.35655 4.43864 4.54773 4.60260 4.63373 4.75067 4.80214 4.81709 4.89976 4.97809 5.14985 5.18037 5.30733 5.41158 5.89410 5.96466 6.19425 6.35909 7.06122 7.08298 8.74529 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.023796 B = 0.002007 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.392958 B =13947.030427 C =14878.411924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.527 5.527 3 C 0.045 3.955 4 C -0.151 4.151 5 C 0.450 3.550 6 F -0.192 7.192 7 F -0.188 7.188 8 F -0.195 7.195 9 C 0.079 3.921 10 H 0.062 0.938 11 C -0.106 4.106 12 C 0.091 3.909 13 N -0.617 5.617 14 C 0.545 3.455 15 O -0.568 6.568 16 C -0.117 4.117 17 S -0.154 6.154 18 C -0.545 4.545 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.261 1.261 24 H -0.280 1.280 25 H -0.261 1.261 26 C 0.112 3.888 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.033 0.967 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.133 0.867 33 H 0.128 0.872 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.271 0.729 41 H 0.055 0.945 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.276 11.595 14.201 32.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.252 5.252 3 C -0.084 4.084 4 C -0.189 4.189 5 C 0.396 3.604 6 F -0.173 7.173 7 F -0.170 7.170 8 F -0.177 7.177 9 C -0.031 4.031 10 H 0.080 0.920 11 C -0.144 4.144 12 C -0.032 4.032 13 N -0.352 5.352 14 C 0.333 3.667 15 O -0.447 6.447 16 C -0.269 4.269 17 S 0.073 5.927 18 C -0.693 4.693 19 H 0.102 0.898 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.822 3.178 23 H -0.185 1.185 24 H -0.205 1.205 25 H -0.185 1.185 26 C -0.011 4.011 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.151 0.849 33 H 0.147 0.853 34 H 0.117 0.883 35 H 0.129 0.871 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -24.504 12.511 14.711 31.199 hybrid contribution -0.430 -0.715 -1.449 1.672 sum -24.934 11.796 13.262 30.606 Atomic orbital electron populations 1.22636 0.84823 1.04180 1.01695 1.61904 1.09770 1.11805 1.41700 1.22078 1.01230 0.89429 0.95617 1.22849 1.05953 0.87726 1.02418 1.20904 0.75541 0.91008 0.72965 1.93177 1.85121 1.81585 1.57466 1.93186 1.92199 1.85137 1.46463 1.93197 1.31962 1.96980 1.95521 1.22677 0.92149 0.95624 0.92617 0.91996 1.22697 0.97806 0.91357 1.02523 1.22379 0.83320 0.95171 1.02289 1.48374 1.10723 1.23034 1.53097 1.19820 0.81386 0.86980 0.78476 1.90693 1.40405 1.52137 1.61467 1.23284 1.02904 0.97971 1.02696 1.85630 1.09983 1.29097 1.67997 1.23155 1.01192 1.05921 1.39027 0.89768 1.26166 0.93869 1.02641 0.96593 1.70185 1.02295 1.40154 1.42202 0.84980 0.77872 0.76625 0.78368 1.18537 1.20468 1.18540 1.22256 0.95990 0.86784 0.96074 0.89351 0.89485 0.94868 0.90748 0.93064 0.84873 0.85349 0.88323 0.87125 0.89990 0.90145 0.87397 0.87414 0.91981 0.92642 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.14 127.69 1.17 1.25 16 2 N -0.53 -5.75 4.66 -888.89 -4.14 -9.89 16 3 C 0.04 0.54 4.61 86.31 0.40 0.93 16 4 C -0.15 -1.29 5.19 30.60 0.16 -1.13 16 5 C 0.45 6.27 3.16 71.98 0.23 6.50 16 6 F -0.19 -3.06 16.80 44.97 0.76 -2.30 16 7 F -0.19 -2.84 17.32 44.97 0.78 -2.06 16 8 F -0.19 -3.64 16.80 44.97 0.76 -2.89 16 9 C 0.08 1.13 2.71 46.31 0.13 1.25 16 10 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 11 C -0.11 -1.12 5.23 31.78 0.17 -0.96 16 12 C 0.09 1.58 6.49 86.73 0.56 2.15 16 13 N -0.62 -17.07 3.33 -811.51 -2.70 -19.77 16 14 C 0.55 21.40 7.87 87.66 0.69 22.09 16 15 O -0.57 -27.86 16.12 -3.05 -0.05 -27.91 16 16 C -0.12 -4.79 5.35 71.24 0.38 -4.41 16 17 S -0.15 -8.72 20.57 -56.49 -1.16 -9.88 16 18 C -0.55 -31.23 9.50 67.95 0.65 -30.59 16 19 H 0.08 4.44 7.80 -2.91 -0.02 4.41 16 20 C 0.01 0.68 5.49 84.86 0.47 1.15 16 21 N -0.91 -56.42 13.22 21.65 0.29 -56.14 16 22 Si 1.00 43.46 29.55 68.60 2.03 45.49 16 23 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 24 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 25 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 26 C 0.11 2.60 5.47 86.83 0.48 3.08 16 27 H 0.09 0.34 7.10 -2.39 -0.02 0.33 16 28 H 0.09 0.26 6.30 -2.39 -0.02 0.24 16 29 H 0.03 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.07 1.19 6.46 -2.39 -0.02 1.17 16 31 H 0.05 0.62 7.78 -2.38 -0.02 0.60 16 32 H 0.13 0.51 6.47 -2.39 -0.02 0.50 16 33 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.11 0.62 8.08 -2.39 -0.02 0.60 16 36 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.11 3.97 8.14 -2.40 -0.02 3.96 16 39 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 40 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 41 H 0.06 1.52 7.69 -2.38 -0.02 1.50 16 42 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -78.89 369.17 3.04 -75.85 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 1.03 Total: 8.20 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 5.46 Total: 1.31 kcal Atomic # 7 Polarization: -79.25 SS G_CDS: -6.56 Total: -85.80 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.05 Total: -27.91 kcal Atomic # 9 Polarization: -9.54 SS G_CDS: 2.29 Total: -7.25 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.88 kcal Total: -78.89 3.04 -75.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188959298.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.624 kcal (2) G-P(sol) polarization free energy of solvation -78.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds