Wall clock time and date at job start Sat Apr 11 2020 05:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 116.99848 * 2 1 4 4 O 1.20827 * 120.00227 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99950 * 180.02562 * 3 2 1 6 6 N 1.46495 * 109.46962 * 180.02562 * 5 3 2 7 7 C 1.34782 * 119.99948 * 180.02562 * 6 5 3 8 8 O 1.21580 * 119.99582 * 0.02562 * 7 6 5 9 9 C 1.47715 * 120.00470 * 179.97438 * 7 6 5 10 10 C 1.39765 * 120.00344 * 179.97438 * 9 7 6 11 11 C 1.37115 * 120.00124 * 180.02562 * 10 9 7 12 12 C 1.39767 * 119.99809 * 0.02562 * 11 10 9 13 13 C 1.47876 * 119.99637 * 179.97438 * 12 11 10 14 14 C 1.40305 * 120.34956 * 179.71828 * 13 12 11 15 15 C 1.36688 * 118.60119 * 179.79384 * 14 13 12 16 16 C 1.40877 * 119.25281 * 0.46131 * 15 14 13 17 17 C 1.40979 * 119.67451 * 179.76281 * 16 15 14 18 18 H 1.07994 * 120.00051 * 0.02562 * 17 16 15 19 19 C 1.40170 * 119.99888 * 180.02562 * 17 16 15 20 20 N 1.30675 * 119.99885 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99997 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47166 * 60.00212 * 21 19 17 23 23 H 1.48497 * 109.46996 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46777 * 300.00028 * 21 19 17 25 25 N 1.33788 * 120.64586 * 359.78121 * 16 15 14 26 26 C 1.31166 * 121.51792 * 359.97438 * 25 16 15 27 27 C 1.39755 * 120.00397 * 0.25261 * 12 11 10 28 28 C 1.37118 * 119.99829 * 359.48685 * 27 12 11 29 29 H 1.08999 * 109.47363 * 59.99806 * 1 2 3 30 30 H 1.08998 * 109.47125 * 179.97438 * 1 2 3 31 31 H 1.09011 * 109.47026 * 300.00180 * 1 2 3 32 32 H 1.08997 * 109.46971 * 59.99992 * 5 3 2 33 33 H 1.08995 * 109.46912 * 300.00239 * 5 3 2 34 34 H 0.96997 * 120.00520 * 0.02562 * 6 5 3 35 35 H 1.07997 * 119.99629 * 0.02562 * 10 9 7 36 36 H 1.07999 * 119.99965 * 180.02562 * 11 10 9 37 37 H 1.08008 * 120.69638 * 0.02562 * 14 13 12 38 38 H 1.07993 * 120.37181 * 180.24393 * 15 14 13 39 39 H 0.96996 * 119.99721 * 179.97438 * 20 19 17 40 40 H 1.08000 * 119.66298 * 179.97438 * 26 25 16 41 41 H 1.07998 * 120.00531 * 179.72599 * 27 12 11 42 42 H 1.07999 * 120.00149 * 180.25475 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 5.2921 2.9951 -0.0007 8 8 6.1294 2.1136 -0.0026 9 6 5.7109 4.4116 -0.0005 10 6 7.0698 4.7386 -0.0009 11 6 7.4586 6.0535 -0.0002 12 6 6.4960 7.0668 0.0014 13 6 6.9153 8.4848 0.0027 14 6 5.9553 9.5080 -0.0016 15 6 6.3826 10.8063 0.0041 16 6 7.7654 11.0759 0.0042 17 6 8.2160 12.4117 0.0050 18 1 7.5025 13.2223 0.0059 19 6 9.5903 12.6878 0.0045 20 7 10.4537 11.7069 0.0029 21 14 10.1874 14.4577 0.0049 22 1 9.6829 15.1502 1.2178 23 1 11.6723 14.4792 0.0037 24 1 9.6819 15.1509 -1.2073 25 7 8.6550 10.0767 0.0032 26 6 8.2758 8.8210 0.0025 27 6 5.1372 6.7399 0.0076 28 6 4.7483 5.4250 0.0015 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8901 32 1 3.9557 0.7810 -0.8908 33 1 3.9564 0.7806 0.8891 34 1 3.3137 3.3830 0.0013 35 1 7.8136 3.9555 -0.0017 36 1 8.5086 6.3061 -0.0009 37 1 4.9007 9.2746 -0.0056 38 1 5.6684 11.6163 0.0049 39 1 11.4047 11.8979 0.0022 40 1 9.0197 8.0380 0.0013 41 1 4.3934 7.5229 0.0133 42 1 3.6983 5.1724 0.0022 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245113445.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:50 Heat of formation + Delta-G solvation = -61.928693 kcal Electronic energy + Delta-G solvation = -26779.947519 eV Core-core repulsion = 22689.942561 eV Total energy + Delta-G solvation = -4090.004958 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.08974 -39.93741 -38.77745 -37.57703 -37.06848 -34.76282 -34.06755 -32.12561 -31.21711 -30.36136 -29.82511 -28.84069 -27.24450 -25.78683 -23.36198 -22.95660 -21.69007 -21.16343 -20.88283 -20.11543 -18.64031 -17.82792 -17.70945 -17.17171 -16.71369 -16.10977 -15.82107 -15.53212 -15.34511 -14.87587 -14.63035 -14.26921 -14.01527 -13.75601 -13.61016 -13.40422 -13.03767 -13.00965 -12.98412 -12.67139 -12.53060 -12.31959 -11.97768 -11.81398 -11.34672 -11.33043 -11.24176 -11.09518 -10.97890 -10.79815 -10.42549 -10.15258 -9.95462 -9.76538 -9.44109 -8.96131 -8.69049 -8.39021 -7.80212 -7.34524 -6.70863 -4.76131 1.00119 1.63042 1.82381 1.97259 2.45615 2.88059 2.92748 2.94391 2.95227 3.10810 3.29229 3.71370 4.18147 4.23933 4.60898 4.63394 4.71042 4.79585 4.87681 5.03012 5.05671 5.10374 5.26655 5.52395 5.69903 5.71211 5.77177 5.83044 5.92303 5.96329 6.05763 6.25914 6.37966 6.51929 6.56567 6.65487 6.75802 6.81594 6.93329 7.13801 7.14784 7.26652 7.34993 7.44800 7.60356 7.77384 7.92660 8.13709 8.31817 8.61922 9.83061 9.98396 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.033872 B = 0.001723 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.436031 B =16247.383505 C =17053.370315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.354 6.354 3 C 0.459 3.541 4 O -0.502 6.502 5 C 0.130 3.870 6 N -0.729 5.729 7 C 0.574 3.426 8 O -0.546 6.546 9 C -0.198 4.198 10 C -0.037 4.037 11 C -0.163 4.163 12 C 0.072 3.928 13 C -0.291 4.291 14 C -0.031 4.031 15 C -0.271 4.271 16 C 0.249 3.751 17 C -0.396 4.396 18 H 0.090 0.910 19 C 0.060 3.940 20 N -0.692 5.692 21 Si 0.915 3.085 22 H -0.261 1.261 23 H -0.274 1.274 24 H -0.262 1.262 25 N -0.489 5.489 26 C 0.166 3.834 27 C -0.163 4.163 28 C -0.066 4.066 29 H 0.065 0.935 30 H 0.105 0.895 31 H 0.065 0.935 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.411 0.589 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.280 0.720 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.687 -15.730 -0.003 20.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.270 6.270 3 C 0.301 3.699 4 O -0.390 6.390 5 C 0.005 3.995 6 N -0.388 5.388 7 C 0.366 3.634 8 O -0.424 6.424 9 C -0.201 4.201 10 C -0.056 4.056 11 C -0.182 4.182 12 C 0.071 3.929 13 C -0.296 4.296 14 C -0.053 4.053 15 C -0.293 4.293 16 C 0.127 3.873 17 C -0.424 4.424 18 H 0.108 0.892 19 C -0.168 4.168 20 N -0.311 5.311 21 Si 0.738 3.262 22 H -0.186 1.186 23 H -0.198 1.198 24 H -0.186 1.186 25 N -0.200 5.200 26 C -0.005 4.005 27 C -0.182 4.182 28 C -0.085 4.085 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.084 0.916 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.250 0.750 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.092 0.908 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.220 -15.803 -0.005 19.381 hybrid contribution -1.380 0.862 -0.002 1.627 sum -12.599 -14.941 -0.007 19.544 Atomic orbital electron populations 1.23349 0.75487 1.04075 1.02898 1.86482 1.24030 1.32589 1.83898 1.23649 0.92004 0.81801 0.72397 1.90692 1.66832 1.36279 1.45152 1.20575 0.86524 0.85959 1.06478 1.45713 1.08593 1.06757 1.77697 1.18369 0.80877 0.89376 0.74822 1.90749 1.51357 1.49864 1.50478 1.19380 0.94727 0.90836 1.15188 1.20888 0.94232 0.96442 0.94017 1.21042 0.99847 0.91701 1.05564 1.19123 0.92250 0.93023 0.88534 1.19056 0.95141 0.90481 1.24967 1.20693 0.97134 0.92735 0.94784 1.21446 0.96857 0.95639 1.15370 1.18700 0.87504 0.93150 0.87957 1.19883 0.92359 0.92067 1.38125 0.89190 1.26257 0.97064 0.99725 0.93800 1.70080 1.03123 1.33207 1.24644 0.86252 0.78327 0.81425 0.80234 1.18586 1.19829 1.18591 1.68809 1.35613 0.97769 1.17835 1.22842 0.91936 0.94705 0.90971 1.20943 0.95846 0.95597 1.05790 1.20914 0.97824 0.92830 0.96937 0.91586 0.87707 0.91578 0.86902 0.86911 0.74987 0.85482 0.85445 0.88112 0.87975 0.90804 0.85699 0.85937 0.86731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.18 10.56 101.05 1.07 1.25 16 2 O -0.35 -2.73 10.57 -39.25 -0.41 -3.15 16 3 C 0.46 4.15 8.03 36.01 0.29 4.44 16 4 O -0.50 -5.74 15.42 -18.75 -0.29 -6.02 16 5 C 0.13 1.14 6.27 -5.19 -0.03 1.11 16 6 N -0.73 -8.22 5.48 -62.47 -0.34 -8.56 16 7 C 0.57 8.23 7.77 -12.39 -0.10 8.13 16 8 O -0.55 -9.11 16.33 5.30 0.09 -9.02 16 9 C -0.20 -3.00 5.88 -104.88 -0.62 -3.61 16 10 C -0.04 -0.58 9.56 -39.42 -0.38 -0.96 16 11 C -0.16 -2.76 9.40 -39.42 -0.37 -3.13 16 12 C 0.07 1.32 5.88 -104.81 -0.62 0.70 16 13 C -0.29 -6.15 5.92 -104.46 -0.62 -6.77 16 14 C -0.03 -0.64 9.46 -39.37 -0.37 -1.02 16 15 C -0.27 -6.18 9.76 -39.14 -0.38 -6.56 16 16 C 0.25 6.36 6.55 -84.98 -0.56 5.80 16 17 C -0.40 -9.75 9.12 -37.82 -0.34 -10.09 16 18 H 0.09 2.03 7.85 -52.49 -0.41 1.62 16 19 C 0.06 1.41 5.50 -17.32 -0.10 1.31 16 20 N -0.69 -17.05 11.44 55.56 0.64 -16.42 16 21 Si 0.91 16.99 29.56 -169.99 -5.03 11.97 16 22 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 23 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 24 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 25 N -0.49 -12.67 7.83 -10.84 -0.08 -12.75 16 26 C 0.17 3.80 10.60 -17.12 -0.18 3.62 16 27 C -0.16 -2.63 9.40 -39.42 -0.37 -3.00 16 28 C -0.07 -0.94 9.50 -39.41 -0.37 -1.32 16 29 H 0.07 0.34 8.13 -51.93 -0.42 -0.08 16 30 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.34 8.13 -51.92 -0.42 -0.08 16 32 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.41 4.40 5.46 -40.82 -0.22 4.17 16 35 H 0.13 1.90 7.64 -52.49 -0.40 1.50 16 36 H 0.13 2.03 6.20 -52.49 -0.33 1.71 16 37 H 0.10 1.80 6.28 -52.48 -0.33 1.47 16 38 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 39 H 0.28 6.22 8.29 -40.82 -0.34 5.88 16 40 H 0.13 2.55 6.20 -52.49 -0.33 2.23 16 41 H 0.12 1.82 6.23 -52.49 -0.33 1.49 16 42 H 0.11 1.30 6.38 -52.49 -0.34 0.97 16 LS Contribution 366.37 15.07 5.52 5.52 Total: -1.00 -30.23 366.37 -8.31 -38.54 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -4.35 Total: 9.98 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -4.05 Total: -10.09 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.21 Total: -37.73 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.62 Total: -18.19 kcal Atomic # 14 Polarization: 16.99 SS G_CDS: -5.03 Total: 11.97 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.23 -8.31 -38.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245113445.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.391 kcal (2) G-P(sol) polarization free energy of solvation -30.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds