Wall clock time and date at job start Sat Apr 11 2020 05:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34784 * 119.99971 * 2 1 4 4 O 1.21283 * 119.99649 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.99774 * 359.72768 * 3 2 1 6 6 S 1.81008 * 109.46759 * 180.02562 * 5 3 2 7 7 C 1.76198 * 99.99946 * 179.97438 * 6 5 3 8 8 H 1.08000 * 119.99996 * 359.97438 * 7 6 5 9 9 C 1.38798 * 120.00252 * 179.97438 * 7 6 5 10 10 N 1.31635 * 119.99702 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00159 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47247 * 59.99814 * 11 9 7 13 13 H 1.48504 * 109.46907 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47096 * 299.99984 * 11 9 7 15 15 C 1.46499 * 120.00136 * 179.97438 * 2 1 3 16 16 H 1.08995 * 110.27248 * 177.91054 * 15 2 1 17 17 C 1.54600 * 110.30564 * 55.71632 * 15 2 1 18 18 C 1.54940 * 102.92071 * 219.12687 * 17 15 2 19 19 N 1.48531 * 103.22616 * 37.41830 * 18 17 15 20 20 C 1.46902 * 110.99826 * 200.28073 * 19 18 17 21 21 C 1.53002 * 109.46701 * 307.39458 * 20 19 18 22 22 C 1.53004 * 109.46753 * 180.02562 * 21 20 19 23 23 F 1.39905 * 109.47252 * 59.99927 * 22 21 20 24 24 F 1.39905 * 109.46781 * 179.97438 * 22 21 20 25 25 F 1.39897 * 109.47145 * 299.99443 * 22 21 20 26 26 C 1.47899 * 105.81861 * 320.79074 * 19 18 17 27 27 H 1.08999 * 109.47256 * 89.99766 * 1 2 3 28 28 H 1.08998 * 109.47416 * 209.99869 * 1 2 3 29 29 H 1.09008 * 109.47058 * 330.00468 * 1 2 3 30 30 H 1.09001 * 109.46809 * 299.99238 * 5 3 2 31 31 H 1.08993 * 109.47525 * 59.99679 * 5 3 2 32 32 H 0.97000 * 119.99806 * 179.97438 * 10 9 7 33 33 H 1.08999 * 110.72503 * 337.49035 * 17 15 2 34 34 H 1.09004 * 110.72188 * 100.76829 * 17 15 2 35 35 H 1.08999 * 110.66621 * 278.98008 * 18 17 15 36 36 H 1.08994 * 110.80732 * 155.91761 * 18 17 15 37 37 H 1.09002 * 109.47089 * 67.39271 * 20 19 18 38 38 H 1.08996 * 109.47071 * 187.39763 * 20 19 18 39 39 H 1.09002 * 109.47196 * 299.99748 * 21 20 19 40 40 H 1.08994 * 109.47629 * 60.00349 * 21 20 19 41 41 H 1.09001 * 109.92015 * 265.98160 * 26 19 18 42 42 H 1.09007 * 109.91892 * 144.68895 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0062 6 16 2.5616 3.8481 -0.0054 7 6 1.4416 5.2082 -0.0139 8 1 0.3763 5.0305 -0.0181 9 6 1.9283 6.5081 -0.0151 10 7 3.2267 6.7247 -0.0094 11 14 0.7408 7.9501 -0.0234 12 1 -0.1191 7.8901 1.1858 13 1 1.5070 9.2222 -0.0241 14 1 -0.1094 7.8842 -1.2392 15 6 2.1975 -1.2687 0.0006 16 1 3.2712 -1.0849 -0.0368 17 6 1.7585 -2.1422 -1.1971 18 6 1.7259 -3.5683 -0.5922 19 7 1.2062 -3.3432 0.7810 20 6 1.5445 -4.4684 1.6628 21 6 1.0867 -5.7778 1.0171 22 6 1.4384 -6.9496 1.9359 23 9 0.7943 -6.7866 3.1671 24 9 1.0193 -8.1469 1.3458 25 9 2.8226 -6.9869 2.1350 26 6 1.8393 -2.0921 1.2515 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8901 0.5138 30 1 0.7625 2.5279 -0.8990 31 1 0.7550 2.5322 0.8809 32 1 3.5668 7.6331 -0.0107 33 1 0.7686 -1.8486 -1.5463 34 1 2.4872 -2.0827 -2.0055 35 1 2.7283 -3.9951 -0.5591 36 1 1.0530 -4.2133 -1.1572 37 1 2.6231 -4.4972 1.8176 38 1 1.0429 -4.3416 2.6222 39 1 0.0081 -5.7489 0.8623 40 1 1.5882 -5.9047 0.0578 41 1 2.7431 -2.3226 1.8156 42 1 1.1409 -1.5345 1.8758 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269215666.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:00 Heat of formation + Delta-G solvation = -181.725894 kcal Electronic energy + Delta-G solvation = -27062.623924 eV Core-core repulsion = 22561.011381 eV Total energy + Delta-G solvation = -4501.612543 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.54285 -48.04589 -48.01447 -40.28692 -38.63435 -35.59417 -33.57631 -32.43694 -30.63955 -29.71783 -28.07411 -26.68694 -25.54597 -25.25976 -23.11514 -21.39192 -21.08075 -19.10472 -18.99054 -18.85259 -17.85066 -17.70530 -16.99297 -16.38133 -16.02082 -15.42584 -15.32927 -14.93934 -14.84867 -14.80564 -14.64536 -14.43673 -14.17630 -14.16453 -14.09390 -13.59496 -13.46984 -13.07571 -12.98432 -12.84963 -12.56583 -12.29214 -12.19907 -12.08835 -11.92151 -11.77676 -11.70158 -11.60458 -11.06062 -11.04590 -10.97725 -10.77169 -9.82536 -9.38983 -9.06753 -8.93488 -8.56693 -8.24462 -6.51481 -6.22394 -3.93265 2.26353 2.87973 2.99031 3.18158 3.22791 3.25199 3.28477 3.47735 3.57106 3.58512 3.74661 4.19542 4.24578 4.29547 4.40014 4.55120 4.78263 4.81758 4.89770 4.99212 5.04831 5.12534 5.14033 5.22032 5.26538 5.30513 5.45375 5.51387 5.53402 5.60692 5.76307 5.80462 5.86962 5.91510 6.12406 6.36503 6.45748 6.63545 7.50454 7.58486 8.34095 8.51507 9.22736 10.84948 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.035345 B = 0.001806 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.990250 B =15499.528706 C =15593.415626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.615 5.615 3 C 0.534 3.466 4 O -0.518 6.518 5 C -0.149 4.149 6 S -0.062 6.062 7 C -0.535 4.535 8 H 0.072 0.928 9 C 0.073 3.927 10 N -0.868 5.868 11 Si 0.919 3.081 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.274 1.274 15 C 0.134 3.866 16 H 0.108 0.892 17 C -0.133 4.133 18 C 0.028 3.972 19 N -0.510 5.510 20 C 0.043 3.957 21 C -0.167 4.167 22 C 0.454 3.546 23 F -0.182 7.182 24 F -0.184 7.184 25 F -0.184 7.184 26 C 0.025 3.975 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.269 0.731 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.050 0.950 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.091 0.909 39 H 0.119 0.881 40 H 0.110 0.890 41 H 0.056 0.944 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.222 -27.865 1.050 28.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.351 5.351 3 C 0.322 3.678 4 O -0.392 6.392 5 C -0.300 4.300 6 S 0.164 5.836 7 C -0.684 4.684 8 H 0.090 0.910 9 C -0.136 4.136 10 N -0.503 5.503 11 Si 0.745 3.255 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.199 1.199 15 C 0.029 3.971 16 H 0.126 0.874 17 C -0.172 4.172 18 C -0.100 4.100 19 N -0.235 5.235 20 C -0.086 4.086 21 C -0.206 4.206 22 C 0.399 3.601 23 F -0.164 7.164 24 F -0.166 7.166 25 F -0.166 7.166 26 C -0.104 4.104 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.138 0.862 40 H 0.129 0.871 41 H 0.075 0.925 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.832 -27.692 1.095 28.321 hybrid contribution -1.338 0.555 0.186 1.460 sum -7.170 -27.137 1.281 28.098 Atomic orbital electron populations 1.21754 0.79494 1.03439 1.01802 1.47867 1.06864 1.04936 1.75432 1.20401 0.87933 0.84624 0.74806 1.90686 1.13804 1.86771 1.47948 1.23551 1.04525 0.97102 1.04779 1.85393 1.08091 0.93376 1.96716 1.22813 0.94268 0.92197 1.59072 0.90979 1.24995 0.95683 0.98380 0.94534 1.70010 1.11746 1.21766 1.46760 0.86224 0.80182 0.80288 0.78805 1.19927 1.20818 1.19937 1.21813 0.98546 0.83329 0.93446 0.87356 1.22877 1.03181 0.93424 0.97718 1.23323 0.98881 0.97786 0.89960 1.64862 1.54727 1.01873 1.02019 1.22265 0.99977 0.88838 0.97520 1.22944 1.06904 0.91615 0.99110 1.20540 0.74496 0.84562 0.80461 1.93202 1.81555 1.95502 1.46132 1.93200 1.89994 1.49653 1.83740 1.93198 1.31107 1.96755 1.95493 1.23325 0.98720 0.90612 0.97699 0.92848 0.90510 0.90739 0.89213 0.89198 0.92130 0.89771 0.90233 0.93123 0.89506 0.92981 0.89052 0.86233 0.87139 0.92545 0.89058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 8.83 59.85 0.53 1.32 16 2 N -0.62 -8.23 2.77 -172.38 -0.48 -8.71 16 3 C 0.53 9.85 7.69 -10.98 -0.08 9.77 16 4 O -0.52 -11.53 15.22 5.56 0.08 -11.44 16 5 C -0.15 -2.97 4.71 36.00 0.17 -2.80 16 6 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 7 C -0.54 -15.12 9.50 30.94 0.29 -14.83 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 10 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 11 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 15 C 0.13 1.51 3.39 -66.57 -0.23 1.29 16 16 H 0.11 1.47 6.96 -51.93 -0.36 1.11 16 17 C -0.13 -1.15 6.65 -24.87 -0.17 -1.32 16 18 C 0.03 0.19 5.11 -1.90 -0.01 0.18 16 19 N -0.51 -3.81 5.40 -230.45 -1.24 -5.06 16 20 C 0.04 0.27 4.78 -3.82 -0.02 0.25 16 21 C -0.17 -0.81 4.92 -26.73 -0.13 -0.94 16 22 C 0.45 3.00 3.16 37.16 0.12 3.11 16 23 F -0.18 -1.41 16.80 2.25 0.04 -1.37 16 24 F -0.18 -1.37 17.32 2.25 0.04 -1.33 16 25 F -0.18 -1.45 16.80 2.25 0.04 -1.41 16 26 C 0.02 0.23 5.86 -2.76 -0.02 0.22 16 27 H 0.05 0.49 7.88 -51.93 -0.41 0.09 16 28 H 0.08 0.66 6.97 -51.93 -0.36 0.30 16 29 H 0.07 0.77 6.44 -51.92 -0.33 0.44 16 30 H 0.09 1.67 8.11 -51.91 -0.42 1.25 16 31 H 0.09 1.66 7.39 -51.92 -0.38 1.27 16 32 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 33 H 0.08 0.73 6.84 -51.93 -0.36 0.37 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.32 8.00 -51.93 -0.42 -0.10 16 36 H 0.09 0.45 7.65 -51.93 -0.40 0.05 16 37 H 0.05 0.35 7.47 -51.93 -0.39 -0.04 16 38 H 0.09 0.59 7.80 -51.93 -0.41 0.18 16 39 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.11 0.42 6.79 -51.93 -0.35 0.06 16 41 H 0.06 0.53 7.57 -51.93 -0.39 0.14 16 42 H 0.09 0.91 7.11 -51.92 -0.37 0.54 16 LS Contribution 364.45 15.07 5.49 5.49 Total: -1.00 -33.56 364.45 -7.91 -41.47 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -5.74 Total: -2.92 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 0.36 Total: -1.75 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: -0.99 Total: -39.06 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.08 Total: -11.44 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.11 Total: -4.11 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.56 -7.91 -41.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269215666.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.261 kcal (2) G-P(sol) polarization free energy of solvation -33.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds