Wall clock time and date at job start Sat Apr 11 2020 05:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34784 * 119.99971 * 2 1 4 4 O 1.21283 * 119.99649 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.99774 * 359.72768 * 3 2 1 6 6 S 1.81008 * 109.46759 * 180.02562 * 5 3 2 7 7 C 1.76198 * 99.99946 * 179.97438 * 6 5 3 8 8 H 1.08000 * 119.99996 * 359.97438 * 7 6 5 9 9 C 1.38798 * 120.00252 * 179.97438 * 7 6 5 10 10 N 1.31635 * 119.99702 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00159 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47247 * 59.99814 * 11 9 7 13 13 H 1.48504 * 109.46907 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47096 * 299.99984 * 11 9 7 15 15 C 1.46499 * 120.00136 * 179.97438 * 2 1 3 16 16 H 1.08995 * 110.27248 * 177.91054 * 15 2 1 17 17 C 1.54600 * 110.30564 * 55.71632 * 15 2 1 18 18 C 1.54940 * 102.92071 * 219.12687 * 17 15 2 19 19 N 1.48531 * 103.22616 * 37.41830 * 18 17 15 20 20 C 1.46902 * 110.99826 * 200.28073 * 19 18 17 21 21 C 1.53002 * 109.46701 * 307.39458 * 20 19 18 22 22 C 1.53004 * 109.46753 * 180.02562 * 21 20 19 23 23 F 1.39905 * 109.47252 * 59.99927 * 22 21 20 24 24 F 1.39905 * 109.46781 * 179.97438 * 22 21 20 25 25 F 1.39897 * 109.47145 * 299.99443 * 22 21 20 26 26 C 1.47899 * 105.81861 * 320.79074 * 19 18 17 27 27 H 1.08999 * 109.47256 * 89.99766 * 1 2 3 28 28 H 1.08998 * 109.47416 * 209.99869 * 1 2 3 29 29 H 1.09008 * 109.47058 * 330.00468 * 1 2 3 30 30 H 1.09001 * 109.46809 * 299.99238 * 5 3 2 31 31 H 1.08993 * 109.47525 * 59.99679 * 5 3 2 32 32 H 0.97000 * 119.99806 * 179.97438 * 10 9 7 33 33 H 1.08999 * 110.72503 * 337.49035 * 17 15 2 34 34 H 1.09004 * 110.72188 * 100.76829 * 17 15 2 35 35 H 1.08999 * 110.66621 * 278.98008 * 18 17 15 36 36 H 1.08994 * 110.80732 * 155.91761 * 18 17 15 37 37 H 1.09002 * 109.47089 * 67.39271 * 20 19 18 38 38 H 1.08996 * 109.47071 * 187.39763 * 20 19 18 39 39 H 1.09002 * 109.47196 * 299.99748 * 21 20 19 40 40 H 1.08994 * 109.47629 * 60.00349 * 21 20 19 41 41 H 1.09001 * 109.92015 * 265.98160 * 26 19 18 42 42 H 1.09007 * 109.91892 * 144.68895 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0062 6 16 2.5616 3.8481 -0.0054 7 6 1.4416 5.2082 -0.0139 8 1 0.3763 5.0305 -0.0181 9 6 1.9283 6.5081 -0.0151 10 7 3.2267 6.7247 -0.0094 11 14 0.7408 7.9501 -0.0234 12 1 -0.1191 7.8901 1.1858 13 1 1.5070 9.2222 -0.0241 14 1 -0.1094 7.8842 -1.2392 15 6 2.1975 -1.2687 0.0006 16 1 3.2712 -1.0849 -0.0368 17 6 1.7585 -2.1422 -1.1971 18 6 1.7259 -3.5683 -0.5922 19 7 1.2062 -3.3432 0.7810 20 6 1.5445 -4.4684 1.6628 21 6 1.0867 -5.7778 1.0171 22 6 1.4384 -6.9496 1.9359 23 9 0.7943 -6.7866 3.1671 24 9 1.0193 -8.1469 1.3458 25 9 2.8226 -6.9869 2.1350 26 6 1.8393 -2.0921 1.2515 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8901 0.5138 30 1 0.7625 2.5279 -0.8990 31 1 0.7550 2.5322 0.8809 32 1 3.5668 7.6331 -0.0107 33 1 0.7686 -1.8486 -1.5463 34 1 2.4872 -2.0827 -2.0055 35 1 2.7283 -3.9951 -0.5591 36 1 1.0530 -4.2133 -1.1572 37 1 2.6231 -4.4972 1.8176 38 1 1.0429 -4.3416 2.6222 39 1 0.0081 -5.7489 0.8623 40 1 1.5882 -5.9047 0.0578 41 1 2.7431 -2.3226 1.8156 42 1 1.1409 -1.5345 1.8758 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269215666.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:00 Heat of formation + Delta-G solvation = -204.304411 kcal Electronic energy + Delta-G solvation = -27063.603002 eV Core-core repulsion = 22561.011381 eV Total energy + Delta-G solvation = -4502.591621 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.08847 -48.59766 -48.57626 -41.31719 -39.67233 -36.64038 -34.57958 -34.33686 -31.52527 -30.69767 -29.11908 -27.71594 -27.55087 -25.95967 -23.64303 -22.40602 -21.68405 -20.33532 -19.57997 -19.53039 -19.39004 -18.42711 -18.21432 -17.34959 -16.89442 -16.87307 -16.47921 -16.24319 -15.98445 -15.52712 -15.41317 -15.23431 -15.00309 -14.74114 -14.73527 -14.57875 -14.53998 -14.48536 -13.87328 -13.80957 -13.57612 -13.50140 -13.17522 -13.09442 -12.87542 -12.79471 -12.69731 -12.59296 -12.45641 -12.38193 -12.16560 -11.77405 -11.69548 -11.12261 -10.87541 -10.26674 -9.68483 -9.54572 -8.67073 -8.33963 -6.12433 1.25920 1.44523 1.46199 1.55415 1.55908 1.77371 2.09763 2.28267 2.64269 2.98776 3.00023 3.09760 3.18559 3.27125 3.55182 3.62297 3.80890 3.91639 3.97161 4.12199 4.23211 4.25110 4.31651 4.37511 4.40398 4.50154 4.60624 4.69699 4.71968 4.81006 4.82223 4.90177 4.99022 5.05748 5.15270 5.42015 5.59886 5.68835 5.87099 6.20028 6.28129 7.07070 7.13579 8.74953 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.035345 B = 0.001806 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.990250 B =15499.528706 C =15593.415626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.600 5.600 3 C 0.532 3.468 4 O -0.568 6.568 5 C -0.122 4.122 6 S -0.155 6.155 7 C -0.545 4.545 8 H 0.083 0.917 9 C 0.012 3.988 10 N -0.911 5.911 11 Si 0.999 3.001 12 H -0.262 1.262 13 H -0.280 1.280 14 H -0.261 1.261 15 C 0.126 3.874 16 H 0.079 0.921 17 C -0.127 4.127 18 C 0.032 3.968 19 N -0.506 5.506 20 C 0.042 3.958 21 C -0.156 4.156 22 C 0.453 3.547 23 F -0.191 7.191 24 F -0.189 7.189 25 F -0.193 7.193 26 C 0.033 3.967 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.271 0.729 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.113 0.887 37 H 0.047 0.953 38 H 0.090 0.910 39 H 0.134 0.866 40 H 0.126 0.874 41 H 0.052 0.948 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.137 -29.187 0.572 30.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.333 5.333 3 C 0.319 3.681 4 O -0.446 6.446 5 C -0.273 4.273 6 S 0.073 5.927 7 C -0.693 4.693 8 H 0.101 0.899 9 C -0.192 4.192 10 N -0.548 5.548 11 Si 0.820 3.180 12 H -0.186 1.186 13 H -0.205 1.205 14 H -0.186 1.186 15 C 0.021 3.979 16 H 0.097 0.903 17 C -0.166 4.166 18 C -0.095 4.095 19 N -0.230 5.230 20 C -0.087 4.087 21 C -0.194 4.194 22 C 0.399 3.601 23 F -0.172 7.172 24 F -0.170 7.170 25 F -0.175 7.175 26 C -0.096 4.096 27 H 0.089 0.911 28 H 0.118 0.882 29 H 0.093 0.907 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.131 0.869 37 H 0.065 0.935 38 H 0.108 0.892 39 H 0.153 0.847 40 H 0.144 0.856 41 H 0.070 0.930 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.794 -29.074 0.617 30.382 hybrid contribution -0.453 0.792 0.350 0.977 sum -9.248 -28.282 0.967 29.772 Atomic orbital electron populations 1.22026 0.76982 1.04640 1.03316 1.47844 1.08321 1.04069 1.73080 1.20176 0.87260 0.85544 0.75071 1.90670 1.15741 1.87456 1.50776 1.23368 1.02656 0.94880 1.06402 1.85584 1.12741 0.97371 1.97035 1.23158 0.94631 0.92602 1.58913 0.89855 1.26144 0.97610 1.01724 0.93754 1.70184 1.14129 1.22502 1.47969 0.85002 0.77599 0.75842 0.79542 1.18609 1.20484 1.18589 1.21973 0.96914 0.82852 0.96148 0.90312 1.22848 1.03290 0.94007 0.96441 1.23398 0.99967 0.96744 0.89402 1.64889 1.54236 1.01356 1.02511 1.22267 0.99794 0.89116 0.97488 1.22912 1.07957 0.89649 0.98921 1.20816 0.73946 0.84978 0.80409 1.93186 1.81654 1.95536 1.46856 1.93191 1.89991 1.50116 1.83741 1.93182 1.31950 1.96814 1.95566 1.23162 0.98631 0.91354 0.96471 0.91090 0.88222 0.90699 0.87456 0.87380 0.92022 0.89025 0.90461 0.92631 0.86902 0.93467 0.89190 0.84749 0.85578 0.92958 0.89377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.26 8.83 127.77 1.13 2.39 16 2 N -0.60 -15.37 2.77 -817.67 -2.27 -17.64 16 3 C 0.53 19.76 7.69 87.65 0.67 20.43 16 4 O -0.57 -26.39 15.22 -3.04 -0.05 -26.43 16 5 C -0.12 -4.83 4.71 71.24 0.34 -4.50 16 6 S -0.15 -8.59 20.57 -56.49 -1.16 -9.76 16 7 C -0.55 -31.00 9.50 67.95 0.65 -30.35 16 8 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 9 C 0.01 0.70 5.49 84.86 0.47 1.17 16 10 N -0.91 -55.99 13.22 21.65 0.29 -55.70 16 11 Si 1.00 43.31 29.55 68.60 2.03 45.33 16 12 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 13 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 14 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 15 C 0.13 2.74 3.39 45.87 0.16 2.90 16 16 H 0.08 2.22 6.96 -2.39 -0.02 2.21 16 17 C -0.13 -1.92 6.65 31.80 0.21 -1.71 16 18 C 0.03 0.33 5.11 86.65 0.44 0.77 16 19 N -0.51 -6.17 5.40 -883.02 -4.76 -10.93 16 20 C 0.04 0.43 4.78 86.30 0.41 0.84 16 21 C -0.16 -1.05 4.92 30.60 0.15 -0.90 16 22 C 0.45 5.17 3.16 71.98 0.23 5.40 16 23 F -0.19 -2.69 16.80 44.97 0.76 -1.93 16 24 F -0.19 -2.47 17.32 44.97 0.78 -1.69 16 25 F -0.19 -2.80 16.80 44.97 0.76 -2.05 16 26 C 0.03 0.57 5.86 86.45 0.51 1.08 16 27 H 0.07 1.06 7.88 -2.39 -0.02 1.04 16 28 H 0.10 1.34 6.97 -2.39 -0.02 1.33 16 29 H 0.07 1.34 6.44 -2.38 -0.02 1.33 16 30 H 0.11 3.85 8.11 -2.40 -0.02 3.83 16 31 H 0.11 3.86 7.39 -2.40 -0.02 3.85 16 32 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 33 H 0.09 1.28 6.84 -2.39 -0.02 1.26 16 34 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.06 0.55 8.00 -2.39 -0.02 0.53 16 36 H 0.11 0.65 7.65 -2.39 -0.02 0.63 16 37 H 0.05 0.55 7.47 -2.39 -0.02 0.53 16 38 H 0.09 0.98 7.80 -2.39 -0.02 0.96 16 39 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.13 0.49 6.79 -2.39 -0.02 0.47 16 41 H 0.05 0.96 7.57 -2.39 -0.02 0.94 16 42 H 0.09 1.61 7.11 -2.38 -0.02 1.59 16 Total: -1.00 -75.92 364.45 2.76 -73.15 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 1.04 Total: 10.13 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: 5.36 Total: -2.48 kcal Atomic # 7 Polarization: -77.53 SS G_CDS: -6.75 Total: -84.27 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.05 Total: -26.43 kcal Atomic # 9 Polarization: -7.96 SS G_CDS: 2.29 Total: -5.67 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.76 kcal Total: -75.92 2.76 -73.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269215666.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.151 kcal (2) G-P(sol) polarization free energy of solvation -75.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds