Wall clock time and date at job start Sat Apr 11 2020 05:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86806 * 120.00021 * 2 1 4 4 H 1.48494 * 109.47368 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46809 * 299.99914 * 3 2 1 6 6 H 1.48500 * 109.47005 * 59.99467 * 3 2 1 7 7 C 1.38799 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99668 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00079 * 359.97438 * 7 2 1 10 10 C 1.80997 * 99.99741 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46828 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99951 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00281 * 179.97438 * 11 10 9 14 14 C 1.46504 * 120.00143 * 180.02562 * 13 11 10 15 15 H 1.08991 * 110.91743 * 31.10215 * 14 13 11 16 16 C 1.54913 * 111.00197 * 267.19516 * 14 13 11 17 17 N 1.47418 * 104.83149 * 204.91889 * 16 14 13 18 18 C 1.34781 * 125.64880 * 204.16569 * 17 16 14 19 19 O 1.21283 * 119.99915 * 359.97438 * 18 17 16 20 20 C 1.50707 * 120.00116 * 179.97438 * 18 17 16 21 21 C 1.54633 * 111.03428 * 292.02368 * 20 18 17 22 22 C 1.51104 * 104.72366 * 217.33097 * 21 20 18 23 23 C 1.30530 * 111.10181 * 16.44058 * 22 21 20 24 24 C 1.51100 * 111.10247 * 359.97438 * 23 22 21 25 25 C 1.47024 * 108.70466 * 24.12695 * 17 16 14 26 26 C 1.54316 * 107.26977 * 358.94505 * 25 17 16 27 27 H 1.09007 * 110.72364 * 96.34806 * 26 25 17 28 28 O 1.42903 * 110.71980 * 219.43757 * 26 25 17 29 29 H 0.97003 * 120.00474 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47602 * 60.00392 * 10 9 7 31 31 H 1.09003 * 109.46776 * 299.99396 * 10 9 7 32 32 H 0.97005 * 119.99782 * 359.97438 * 13 11 10 33 33 H 1.08998 * 110.36431 * 86.08137 * 16 14 13 34 34 H 1.08996 * 110.45844 * 323.80283 * 16 14 13 35 35 H 1.09000 * 110.91003 * 56.03117 * 20 18 17 36 36 H 1.09003 * 110.39265 * 336.14635 * 21 20 18 37 37 H 1.09003 * 110.38385 * 98.52509 * 21 20 18 38 38 H 1.07994 * 124.45057 * 196.41661 * 22 21 20 39 39 H 1.07993 * 124.44370 * 179.97438 * 23 22 21 40 40 H 1.09004 * 110.38240 * 224.75190 * 24 23 22 41 41 H 1.08997 * 110.39014 * 102.37801 * 24 23 22 42 42 H 1.08999 * 109.88420 * 239.52143 * 25 17 16 43 43 H 1.09005 * 109.88001 * 118.36065 * 25 17 16 44 44 H 0.96700 * 114.00311 * 298.54931 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5160 -3.8913 0.0029 11 6 1.9875 -5.3026 0.0036 12 8 0.7912 -5.5023 0.0038 13 7 2.8443 -6.3430 0.0039 14 6 2.3305 -7.7150 0.0039 15 1 1.3778 -7.7738 -0.5222 16 6 2.2018 -8.2596 1.4484 17 7 2.2878 -9.7246 1.3085 18 6 1.7871 -10.6273 2.1751 19 8 1.2068 -10.2534 3.1723 20 6 1.9481 -12.1012 1.9049 21 6 1.1161 -12.5343 0.6756 22 6 0.5924 -13.9066 1.0305 23 6 0.6922 -14.1306 2.3125 24 6 1.2997 -12.9454 3.0262 25 6 3.0096 -10.0380 0.0665 26 6 3.3651 -8.6963 -0.6078 27 1 4.3820 -8.3954 -0.3557 28 8 3.2024 -8.7838 -2.0248 29 1 -0.4851 0.8400 -0.0004 30 1 3.1246 -3.7305 0.8928 31 1 3.1245 -3.7320 -0.8873 32 1 3.8011 -6.1834 0.0033 33 1 1.2407 -7.9753 1.8768 34 1 3.0175 -7.8893 2.0693 35 1 2.9991 -12.3609 1.7780 36 1 0.2894 -11.8426 0.5137 37 1 1.7478 -12.5866 -0.2111 38 1 0.1882 -14.6095 0.3172 39 1 0.3815 -15.0432 2.7991 40 1 2.0559 -13.2774 3.7377 41 1 0.5256 -12.3704 3.5342 42 1 2.3732 -10.6275 -0.5935 43 1 3.9208 -10.5902 0.2966 44 1 3.7730 -9.4410 -2.4464 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281641246.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:02 Heat of formation + Delta-G solvation = -124.890958 kcal Electronic energy + Delta-G solvation = -26670.150837 eV Core-core repulsion = 22712.859582 eV Total energy + Delta-G solvation = -3957.291255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.80372 -40.76649 -39.42262 -38.37877 -36.62056 -35.45599 -34.58857 -32.18470 -30.76677 -29.92191 -29.26328 -28.74238 -27.65504 -25.14868 -22.71974 -22.43247 -21.85078 -20.32951 -19.86855 -19.70075 -18.57606 -18.52892 -17.81913 -17.43051 -17.09564 -16.88684 -16.82855 -16.49275 -16.37352 -15.70863 -15.22523 -15.06991 -14.69817 -14.68741 -14.46106 -13.96270 -13.83605 -13.77146 -13.56130 -13.32995 -13.25505 -13.16475 -12.98786 -12.91604 -12.70364 -12.60382 -12.23644 -12.08517 -11.87900 -11.69310 -11.42683 -11.16434 -11.02611 -10.93155 -10.35496 -10.27534 -9.82717 -9.81536 -8.67889 -8.35149 -6.13533 1.22809 1.34215 1.40981 1.41509 1.46490 1.52167 1.56142 1.70866 2.22412 2.27097 2.99176 2.99718 3.14974 3.29377 3.43600 3.52762 3.58810 3.82801 3.88185 3.98391 4.09166 4.15658 4.20252 4.30493 4.35152 4.49764 4.51140 4.56034 4.62206 4.66879 4.74446 4.77160 4.85162 4.88195 4.96266 5.05625 5.18458 5.34569 5.41950 5.60770 5.96686 6.19743 6.30635 6.41112 6.90564 6.97713 7.06185 7.17246 8.74365 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.025481 B = 0.001997 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.579364 B =14016.795352 C =14525.761575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.011 3.989 3 Si 1.001 2.999 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.085 0.915 9 S -0.157 6.157 10 C -0.127 4.127 11 C 0.536 3.464 12 O -0.564 6.564 13 N -0.698 5.698 14 C 0.139 3.861 15 H 0.079 0.921 16 C 0.098 3.902 17 N -0.611 5.611 18 C 0.531 3.469 19 O -0.586 6.586 20 C -0.103 4.103 21 C -0.089 4.089 22 C -0.168 4.168 23 C -0.169 4.169 24 C -0.096 4.096 25 C 0.068 3.932 26 C 0.104 3.896 27 H 0.117 0.883 28 O -0.567 6.567 29 H 0.271 0.729 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.422 0.578 33 H 0.047 0.953 34 H 0.089 0.911 35 H 0.139 0.861 36 H 0.058 0.942 37 H 0.109 0.891 38 H 0.147 0.853 39 H 0.141 0.859 40 H 0.085 0.915 41 H 0.063 0.937 42 H 0.096 0.904 43 H 0.121 0.879 44 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.260 -31.043 -1.940 34.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.194 4.194 3 Si 0.822 3.178 4 H -0.178 1.178 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.691 4.691 8 H 0.104 0.896 9 S 0.070 5.930 10 C -0.278 4.278 11 C 0.323 3.677 12 O -0.441 6.441 13 N -0.352 5.352 14 C 0.032 3.968 15 H 0.097 0.903 16 C -0.027 4.027 17 N -0.346 5.346 18 C 0.322 3.678 19 O -0.465 6.465 20 C -0.124 4.124 21 C -0.126 4.126 22 C -0.185 4.185 23 C -0.187 4.187 24 C -0.133 4.133 25 C -0.054 4.054 26 C 0.043 3.957 27 H 0.135 0.865 28 O -0.376 6.376 29 H 0.080 0.920 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.261 0.739 33 H 0.066 0.934 34 H 0.107 0.893 35 H 0.156 0.844 36 H 0.077 0.923 37 H 0.127 0.873 38 H 0.164 0.836 39 H 0.159 0.841 40 H 0.103 0.897 41 H 0.081 0.919 42 H 0.115 0.885 43 H 0.139 0.861 44 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 12.388 -30.681 -1.282 33.112 hybrid contribution 1.668 1.247 0.231 2.096 sum 14.057 -29.434 -1.051 32.635 Atomic orbital electron populations 1.70198 1.08050 1.28540 1.48122 1.26169 0.95981 1.03457 0.93786 0.84876 0.78675 0.76202 0.78002 1.17802 1.19948 1.20087 1.23240 0.95407 0.91807 1.58676 0.89647 1.85674 1.10725 0.99495 1.97066 1.23353 1.03545 0.93755 1.07174 1.20180 0.86203 0.86846 0.74498 1.90718 1.17654 1.86024 1.49725 1.45442 1.10457 1.03694 1.75621 1.21910 0.99304 0.81295 0.94308 0.90270 1.22474 1.02381 0.80736 0.97072 1.48282 1.56621 1.05512 1.24144 1.20850 0.76689 0.88974 0.81313 1.90717 1.44129 1.81908 1.29782 1.22189 1.03893 0.87962 0.98317 1.21376 0.98835 0.95029 0.97357 1.23417 1.00942 0.96907 0.97278 1.23414 1.00719 0.98667 0.95915 1.21327 1.00149 0.94403 0.97427 1.23187 0.98956 0.98249 0.85023 1.22977 0.98589 0.92229 0.81877 0.86517 1.86637 1.68230 1.64685 1.18035 0.92035 0.86778 0.86762 0.73924 0.93396 0.89258 0.84350 0.92322 0.87255 0.83570 0.84089 0.89673 0.91905 0.88541 0.86111 0.74132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.69 13.22 21.65 0.29 -56.40 16 2 C 0.01 0.61 5.49 84.86 0.47 1.07 16 3 Si 1.00 43.77 29.55 68.60 2.03 45.80 16 4 H -0.25 -10.30 7.11 99.48 0.71 -9.59 16 5 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 7 C -0.54 -31.07 9.50 67.95 0.65 -30.43 16 8 H 0.09 4.50 7.80 -2.91 -0.02 4.47 16 9 S -0.16 -8.79 20.57 -56.49 -1.16 -9.95 16 10 C -0.13 -4.96 6.16 71.24 0.44 -4.52 16 11 C 0.54 19.74 7.85 87.66 0.69 20.43 16 12 O -0.56 -26.82 15.50 -3.04 -0.05 -26.87 16 13 N -0.70 -16.69 5.20 -435.96 -2.27 -18.95 16 14 C 0.14 3.08 3.15 46.38 0.15 3.22 16 15 H 0.08 2.41 7.54 -2.39 -0.02 2.39 16 16 C 0.10 2.31 6.60 86.86 0.57 2.88 16 17 N -0.61 -11.08 3.33 -811.80 -2.70 -13.78 16 18 C 0.53 11.76 7.11 87.66 0.62 12.39 16 19 O -0.59 -19.33 15.76 -3.04 -0.05 -19.38 16 20 C -0.10 -1.37 2.91 -10.43 -0.03 -1.40 16 21 C -0.09 -0.98 5.35 30.53 0.16 -0.81 16 22 C -0.17 -1.77 10.78 26.26 0.28 -1.49 16 23 C -0.17 -2.05 10.78 26.26 0.28 -1.77 16 24 C -0.10 -1.51 6.18 30.52 0.19 -1.33 16 25 C 0.07 0.53 6.03 86.73 0.52 1.06 16 26 C 0.10 1.07 3.97 31.78 0.13 1.19 16 27 H 0.12 0.49 8.01 -2.38 -0.02 0.47 16 28 O -0.57 -6.42 13.39 -148.98 -2.00 -8.41 16 29 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 30 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 31 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 32 H 0.42 6.48 8.57 -92.70 -0.79 5.68 16 33 H 0.05 1.56 8.04 -2.39 -0.02 1.54 16 34 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.14 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.06 0.94 7.88 -2.39 -0.02 0.92 16 37 H 0.11 0.53 7.32 -2.39 -0.02 0.51 16 38 H 0.15 1.00 8.06 -2.91 -0.02 0.97 16 39 H 0.14 1.26 8.06 -2.91 -0.02 1.23 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.06 1.43 6.96 -2.39 -0.02 1.41 16 42 H 0.10 0.60 6.48 -2.39 -0.02 0.59 16 43 H 0.12 0.04 8.14 -2.38 -0.02 0.02 16 44 H 0.41 -0.04 9.11 -74.06 -0.67 -0.72 16 Total: -1.00 -91.82 380.68 -1.22 -93.03 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -0.43 Total: 14.42 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 5.12 Total: 0.50 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: -4.68 Total: -89.14 kcal Atomic # 8 Polarization: -52.57 SS G_CDS: -2.09 Total: -54.66 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -1.16 Total: -9.95 kcal Total: -91.82 -1.22 -93.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281641246.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.857 kcal (2) G-P(sol) polarization free energy of solvation -91.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds