Wall clock time and date at job start Sat Apr 11 2020 05:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 120.00023 * 2 1 4 4 H 1.48489 * 109.47437 * 270.00483 * 3 2 1 5 5 H 1.48500 * 109.46931 * 30.00641 * 3 2 1 6 6 H 1.48503 * 109.46655 * 150.00157 * 3 2 1 7 7 C 1.38806 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99918 * 359.97438 * 7 2 1 9 9 S 1.76193 * 120.00056 * 179.97438 * 7 2 1 10 10 C 1.81002 * 100.00049 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47156 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99566 * 180.02562 * 13 11 10 15 15 H 1.09003 * 110.89108 * 31.12266 * 14 13 11 16 16 C 1.54909 * 111.00676 * 267.20003 * 14 13 11 17 17 N 1.47423 * 104.83342 * 204.91890 * 16 14 13 18 18 C 1.34777 * 125.65010 * 204.07756 * 17 16 14 19 19 O 1.21281 * 119.99822 * 0.03339 * 18 17 16 20 20 C 1.50705 * 120.00101 * 180.02562 * 18 17 16 21 21 H 1.09003 * 115.55093 * 325.67553 * 20 18 17 22 22 C 1.52996 * 117.49606 * 111.38260 * 20 18 17 23 23 C 1.52992 * 117.49845 * 180.02562 * 20 18 17 24 24 C 1.52991 * 138.58903 * 121.62218 * 23 20 18 25 25 C 1.52995 * 138.58875 * 23.40764 * 23 20 18 26 26 C 1.47023 * 108.70369 * 24.12712 * 17 16 14 27 27 C 1.54320 * 107.27059 * 358.94261 * 26 17 16 28 28 H 1.09003 * 110.72321 * 96.17032 * 27 26 17 29 29 O 1.42906 * 110.87216 * 219.37405 * 27 26 17 30 30 H 0.96999 * 120.00138 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.47115 * 60.00094 * 10 9 7 32 32 H 1.09001 * 109.46925 * 300.00251 * 10 9 7 33 33 H 0.96995 * 120.00011 * 0.02562 * 13 11 10 34 34 H 1.08999 * 110.36735 * 323.75424 * 16 14 13 35 35 H 1.08993 * 110.37211 * 86.07908 * 16 14 13 36 36 H 1.09004 * 117.50059 * 214.97963 * 22 20 18 37 37 H 1.09002 * 117.50565 * 359.97438 * 22 20 18 38 38 H 1.09003 * 117.49867 * 336.58792 * 24 23 20 39 39 H 1.08990 * 117.50629 * 121.61686 * 24 23 20 40 40 H 1.09005 * 117.49413 * 238.38188 * 25 23 20 41 41 H 1.09000 * 117.49796 * 23.39668 * 25 23 20 42 42 H 1.08999 * 109.88400 * 239.52321 * 26 17 16 43 43 H 1.08997 * 109.88473 * 118.35629 * 26 17 16 44 44 H 0.96695 * 113.99623 * 293.60491 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.3999 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4400 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0866 -2.9846 -0.0025 11 6 5.5731 -3.2325 -0.0026 12 8 6.3440 -2.2963 -0.0014 13 7 6.0457 -4.4948 -0.0030 14 6 7.4907 -4.7357 -0.0026 15 1 8.0173 -3.9400 0.5244 16 6 8.0274 -4.8961 -1.4468 17 7 9.2532 -5.7031 -1.3066 18 6 10.2849 -5.7217 -2.1735 19 8 10.2514 -5.0324 -3.1708 20 6 11.4803 -6.5988 -1.9035 21 1 11.7486 -6.7179 -0.8537 22 6 11.7015 -7.7962 -2.8299 23 6 12.6190 -6.5751 -2.9250 24 6 14.1167 -6.2657 -2.9668 25 6 13.1772 -5.6399 -3.9996 26 6 9.1632 -6.4852 -0.0649 27 6 7.8231 -6.1225 0.6090 28 1 7.0534 -6.8509 0.3538 29 8 7.9756 -6.0264 2.0266 30 1 -0.4850 0.8400 0.0004 31 1 3.6434 -3.4310 -0.8927 32 1 3.6440 -3.4322 0.8873 33 1 5.4291 -5.2435 -0.0036 34 1 7.2985 -5.4181 -2.0667 35 1 8.2619 -3.9215 -1.8749 36 1 12.1152 -8.7035 -2.3897 37 1 10.9822 -7.9499 -3.6344 38 1 14.5177 -5.6134 -2.1909 39 1 14.7847 -7.0564 -3.3080 40 1 13.2271 -6.0192 -5.0203 41 1 12.9600 -4.5761 -3.9032 42 1 9.9915 -6.2289 0.5956 43 1 9.1858 -7.5504 -0.2952 44 1 8.1841 -6.8665 2.4575 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281641321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:04 Heat of formation + Delta-G solvation = -47.927010 kcal Electronic energy + Delta-G solvation = -26407.876378 eV Core-core repulsion = 22453.922530 eV Total energy + Delta-G solvation = -3953.953848 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.84316 -39.64269 -38.53211 -37.54608 -35.91201 -34.32981 -33.04469 -32.44005 -30.73450 -29.19135 -28.33340 -25.63686 -25.05481 -23.09845 -22.75982 -21.62082 -20.67773 -20.39017 -19.05643 -18.13671 -17.80950 -17.59285 -16.77930 -16.40680 -15.94387 -15.46586 -15.31130 -15.17301 -15.11607 -14.95528 -14.64852 -14.17935 -13.83129 -13.75584 -13.40579 -13.27219 -12.95725 -12.79374 -12.70843 -12.53517 -12.10202 -11.96986 -11.83910 -11.27337 -11.15565 -11.00562 -10.89984 -10.63179 -10.61524 -10.54694 -10.42396 -10.06163 -9.86320 -9.61762 -9.28859 -9.00957 -8.97385 -8.51005 -6.92514 -6.29134 -4.01064 2.10710 2.31412 2.72236 2.86838 3.20392 3.26280 3.31806 3.34144 3.51220 3.56934 3.63289 3.82102 3.93503 4.13018 4.29992 4.33345 4.38871 4.43164 4.61190 4.70359 4.82446 4.87093 4.98624 5.04151 5.07199 5.10015 5.19743 5.22825 5.24273 5.26832 5.27363 5.45211 5.57524 5.58614 5.71324 5.73908 5.79255 5.82024 5.98262 6.37190 7.04301 7.12118 7.46432 7.82579 7.93813 8.38682 8.41167 9.17033 10.79985 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020070 B = 0.002086 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.780912 B =13420.787260 C =14280.505939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.140 6.140 10 C -0.124 4.124 11 C 0.534 3.466 12 O -0.513 6.513 13 N -0.724 5.724 14 C 0.145 3.855 15 H 0.116 0.884 16 C 0.096 3.904 17 N -0.613 5.613 18 C 0.558 3.442 19 O -0.524 6.524 20 C -0.139 4.139 21 H 0.124 0.876 22 C -0.099 4.099 23 C -0.203 4.203 24 C -0.128 4.128 25 C -0.113 4.113 26 C 0.074 3.926 27 C 0.086 3.914 28 H 0.083 0.917 29 O -0.545 6.545 30 H 0.271 0.729 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.402 0.598 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.674 -22.519 -0.912 33.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.274 4.274 11 C 0.321 3.679 12 O -0.386 6.386 13 N -0.379 5.379 14 C 0.038 3.962 15 H 0.134 0.866 16 C -0.028 4.028 17 N -0.350 5.350 18 C 0.346 3.654 19 O -0.399 6.399 20 C -0.160 4.160 21 H 0.142 0.858 22 C -0.136 4.136 23 C -0.203 4.203 24 C -0.165 4.165 25 C -0.150 4.150 26 C -0.051 4.051 27 C 0.026 3.974 28 H 0.100 0.900 29 O -0.350 6.350 30 H 0.081 0.919 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.237 0.763 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.125 0.875 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.120 0.880 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 25.682 -19.819 -1.616 32.481 hybrid contribution -1.107 -1.390 0.267 1.797 sum 24.575 -21.208 -1.349 32.489 Atomic orbital electron populations 1.69936 1.05901 1.27779 1.48018 1.24713 0.94460 0.98976 0.93161 0.86736 0.81899 0.83271 0.79964 1.19188 1.19928 1.15912 1.22309 0.88223 0.97546 1.58854 0.89352 1.84833 1.09334 0.99790 1.97430 1.23273 0.93533 1.04640 1.05968 1.20360 0.90771 0.82058 0.74737 1.90722 1.58709 1.42048 1.47111 1.45752 1.05809 1.08545 1.77755 1.21914 0.83053 0.97009 0.94230 0.86581 1.22684 0.85715 0.97424 0.96939 1.48157 1.18802 1.44813 1.23191 1.19387 0.81820 0.82209 0.81960 1.90742 1.79639 1.42481 1.27075 1.21914 0.94637 1.01601 0.97824 0.85848 1.22672 1.00068 0.90850 1.00023 1.21181 0.93734 1.02153 1.03255 1.22779 0.89146 1.02645 1.01934 1.22632 0.99703 0.98470 0.94181 1.22770 0.99199 0.96461 0.86654 1.23060 0.95097 0.97435 0.81855 0.89954 1.86676 1.93587 1.36974 1.17779 0.91933 0.88323 0.88257 0.76305 0.90517 0.88869 0.87465 0.88012 0.88434 0.88222 0.88391 0.88046 0.89951 0.90381 0.77011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.54 13.97 55.49 0.78 -25.77 16 2 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.91 27.74 -169.99 -4.71 17.19 16 4 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 7 C -0.52 -15.00 10.04 30.94 0.31 -14.69 16 8 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 9 S -0.14 -3.55 18.55 -107.50 -1.99 -5.54 16 10 C -0.12 -2.34 6.16 36.01 0.22 -2.11 16 11 C 0.53 9.27 7.85 -10.98 -0.09 9.18 16 12 O -0.51 -10.99 15.50 5.56 0.09 -10.90 16 13 N -0.72 -8.71 5.20 -51.73 -0.27 -8.98 16 14 C 0.15 1.60 3.15 -65.78 -0.21 1.40 16 15 H 0.12 1.64 7.54 -51.93 -0.39 1.24 16 16 C 0.10 1.09 6.60 -2.53 -0.02 1.07 16 17 N -0.61 -5.99 3.33 -170.53 -0.57 -6.56 16 18 C 0.56 6.38 7.63 -10.98 -0.08 6.30 16 19 O -0.52 -8.15 16.50 5.56 0.09 -8.06 16 20 C -0.14 -1.12 5.54 -91.78 -0.51 -1.62 16 21 H 0.12 0.73 7.67 -51.93 -0.40 0.33 16 22 C -0.10 -0.64 10.24 -26.71 -0.27 -0.92 16 23 C -0.20 -1.68 5.06 -154.50 -0.78 -2.46 16 24 C -0.13 -0.83 10.53 -26.74 -0.28 -1.11 16 25 C -0.11 -0.96 10.16 -26.73 -0.27 -1.23 16 26 C 0.07 0.44 6.09 -3.07 -0.02 0.42 16 27 C 0.09 0.59 3.97 -24.90 -0.10 0.49 16 28 H 0.08 0.39 8.00 -51.93 -0.42 -0.02 16 29 O -0.55 -3.98 13.40 -35.23 -0.47 -4.46 16 30 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 32 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 33 H 0.40 3.52 8.57 -40.82 -0.35 3.17 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.34 8.04 -51.93 -0.42 0.92 16 36 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.08 0.45 7.90 -51.93 -0.41 0.04 16 43 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.38 0.83 9.12 45.56 0.42 1.25 16 LS Contribution 388.23 15.07 5.85 5.85 Total: -1.00 -38.30 388.23 -9.18 -47.47 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -5.77 Total: 2.33 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -2.19 Total: -2.57 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: -0.06 Total: -41.31 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.29 Total: -23.42 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.19 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -38.30 -9.18 -47.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281641321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.456 kcal (2) G-P(sol) polarization free energy of solvation -38.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds