Wall clock time and date at job start Sat Apr 11 2020 05:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86803 * 120.00012 * 2 1 4 4 H 1.48506 * 109.47033 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47242 * 299.99857 * 3 2 1 6 6 H 1.48500 * 109.46769 * 60.00451 * 3 2 1 7 7 C 1.38804 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00119 * 180.02562 * 7 2 1 9 9 S 1.76194 * 119.99728 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99790 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46955 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99926 * 0.02562 * 11 10 9 13 13 N 1.34771 * 119.99931 * 180.02562 * 11 10 9 14 14 C 1.47026 * 125.65100 * 180.02562 * 13 11 10 15 15 C 1.54316 * 107.27365 * 180.79395 * 14 13 11 16 16 H 1.08997 * 110.72381 * 140.55486 * 15 14 13 17 17 N 1.46507 * 110.72054 * 263.65177 * 15 14 13 18 18 C 1.34770 * 119.99777 * 273.54817 * 17 15 14 19 19 O 1.21617 * 120.00206 * 359.97438 * 18 17 15 20 20 C 1.47101 * 119.99933 * 180.02562 * 18 17 15 21 21 C 1.32613 * 124.62460 * 180.02562 * 20 18 17 22 22 C 1.51108 * 110.76428 * 179.97438 * 21 20 18 23 23 C 1.54574 * 104.83649 * 16.59494 * 22 21 20 24 24 C 1.51117 * 124.61948 * 359.71839 * 20 18 17 25 25 C 1.55160 * 102.94268 * 22.19228 * 15 14 13 26 26 H 1.08999 * 111.00447 * 82.61518 * 25 15 14 27 27 O 1.42906 * 111.00218 * 206.42477 * 25 15 14 28 28 C 1.47425 * 125.64767 * 359.69212 * 13 11 10 29 29 H 0.97003 * 119.99609 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46696 * 60.00852 * 10 9 7 31 31 H 1.08989 * 109.47307 * 300.00149 * 10 9 7 32 32 H 1.09004 * 109.87531 * 300.21113 * 14 13 11 33 33 H 1.08996 * 109.88343 * 61.21833 * 14 13 11 34 34 H 0.97001 * 119.99959 * 93.54175 * 17 15 14 35 35 H 1.08004 * 124.61956 * 0.02562 * 21 20 18 36 36 H 1.08996 * 110.36817 * 135.43431 * 22 21 20 37 37 H 1.08996 * 110.36858 * 257.64801 * 22 21 20 38 38 H 1.09003 * 110.98395 * 93.07522 * 23 22 21 39 39 H 1.09006 * 110.98673 * 216.83207 * 23 22 21 40 40 H 1.09002 * 110.36522 * 282.24285 * 24 20 18 41 41 H 1.08993 * 110.36394 * 44.56477 * 24 20 18 42 42 H 0.96697 * 113.99652 * 179.97438 * 27 25 15 43 43 H 1.09001 * 110.36478 * 274.97629 * 28 13 11 44 44 H 1.08998 * 110.36859 * 37.30006 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3965 -1.2125 6 1 1.8916 2.3963 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1292 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9872 -5.3027 0.0001 12 8 0.7910 -5.5022 0.0000 13 7 2.8439 -6.3431 0.0007 14 6 2.4664 -7.7641 0.0009 15 6 3.7727 -8.5853 0.0221 16 1 3.6713 -9.4546 0.6717 17 7 4.1498 -8.9945 -1.3332 18 6 3.6470 -10.1290 -1.8589 19 8 2.8806 -10.8133 -1.2081 20 6 4.0260 -10.5403 -3.2194 21 6 3.5873 -11.6353 -3.8253 22 6 4.1747 -11.7518 -5.2127 23 6 5.3762 -10.7793 -5.2167 24 6 4.9632 -9.7691 -4.1197 25 6 4.8041 -7.5826 0.6038 26 1 4.7544 -7.5585 1.6924 27 8 6.1268 -7.8937 0.1610 28 6 4.3149 -6.2449 -0.0056 29 1 -0.4850 0.8401 -0.0004 30 1 3.1243 -3.7314 0.8895 31 1 3.1244 -3.7314 -0.8904 32 1 1.8723 -7.9896 0.8865 33 1 1.8947 -7.9958 -0.8977 34 1 4.7613 -8.4489 -1.8521 35 1 2.9027 -12.3466 -3.3872 36 1 4.5117 -12.7717 -5.3976 37 1 3.4410 -11.4538 -5.9616 38 1 6.2978 -11.2963 -4.9494 39 1 5.4748 -10.2846 -6.1830 40 1 4.4485 -8.9157 -4.5612 41 1 5.8386 -9.4378 -3.5612 42 1 6.8058 -7.2937 0.4987 43 1 4.6834 -6.1351 -1.0255 44 1 4.6417 -5.4061 0.6091 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281876841.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:08 Heat of formation + Delta-G solvation = -98.535792 kcal Electronic energy + Delta-G solvation = -26826.521340 eV Core-core repulsion = 22870.372930 eV Total energy + Delta-G solvation = -3956.148409 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.77139 -39.65949 -38.27213 -37.67203 -35.76881 -34.21750 -32.46822 -30.99844 -29.68475 -29.05813 -28.75676 -27.84047 -25.53443 -23.80162 -22.85574 -21.45710 -20.70345 -19.58766 -19.13032 -17.96981 -17.77264 -17.45954 -16.82390 -16.39675 -15.95867 -15.54308 -15.30223 -15.00355 -14.88627 -14.84142 -14.34988 -13.84102 -13.59819 -13.48178 -13.24530 -13.11342 -12.95489 -12.61391 -12.41588 -12.37270 -12.28378 -12.03989 -11.84056 -11.64005 -11.55455 -11.35999 -11.10394 -11.06008 -10.80054 -10.65750 -10.15712 -9.85308 -9.57116 -9.39402 -9.20573 -9.11222 -8.63247 -8.27460 -6.54881 -6.25440 -3.96597 1.08549 2.69672 2.89584 2.99143 3.04553 3.18569 3.21012 3.27551 3.45967 3.68334 4.05206 4.10677 4.15403 4.17288 4.22597 4.58873 4.66195 4.67432 4.89237 4.92954 4.98947 5.09064 5.09758 5.22141 5.25255 5.29141 5.37739 5.39987 5.47811 5.52587 5.54419 5.58195 5.73957 5.76675 5.82243 5.95296 6.05154 6.18222 6.20101 6.26181 7.09363 7.28075 7.52213 7.55982 7.99492 8.31254 8.46630 9.19778 10.82021 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016271 B = 0.002254 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.452844 B =12419.579451 C =12659.786336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.146 4.146 11 C 0.549 3.451 12 O -0.509 6.509 13 N -0.623 5.623 14 C 0.099 3.901 15 C 0.145 3.855 16 H 0.113 0.887 17 N -0.704 5.704 18 C 0.568 3.432 19 O -0.542 6.542 20 C -0.194 4.194 21 C -0.072 4.072 22 C -0.108 4.108 23 C -0.123 4.123 24 C -0.092 4.092 25 C 0.085 3.915 26 H 0.092 0.908 27 O -0.551 6.551 28 C 0.070 3.930 29 H 0.268 0.732 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.407 0.593 35 H 0.138 0.862 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.387 0.613 43 H 0.076 0.924 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.747 -21.375 -6.050 27.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.297 4.297 11 C 0.337 3.663 12 O -0.382 6.382 13 N -0.363 5.363 14 C -0.025 4.025 15 C 0.039 3.961 16 H 0.131 0.869 17 N -0.355 5.355 18 C 0.357 3.643 19 O -0.421 6.421 20 C -0.197 4.197 21 C -0.092 4.092 22 C -0.145 4.145 23 C -0.160 4.160 24 C -0.129 4.129 25 C 0.025 3.975 26 H 0.110 0.890 27 O -0.356 6.356 28 C -0.055 4.055 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.242 0.758 35 H 0.156 0.844 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.235 0.765 43 H 0.094 0.906 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 13.886 -22.442 -5.880 27.038 hybrid contribution 2.510 2.106 0.096 3.278 sum 16.396 -20.336 -5.784 26.755 Atomic orbital electron populations 1.70027 1.05962 1.27405 1.46774 1.25005 0.95039 0.99066 0.94515 0.86108 0.79528 0.81846 0.77943 1.19634 1.20533 1.20540 1.22881 0.94884 0.91547 1.59023 0.90889 1.85463 1.04792 0.96357 1.96702 1.23508 1.06576 0.94850 1.04732 1.20073 0.85668 0.85346 0.75194 1.90731 1.14848 1.84986 1.47644 1.48357 1.05957 1.05663 1.76286 1.22371 0.96146 0.80276 1.03672 1.21963 0.92195 0.97258 0.84654 0.86913 1.45582 1.48939 1.24999 1.15999 1.17995 0.80003 0.80311 0.85993 1.90807 1.35540 1.53821 1.61924 1.21786 1.04070 0.99326 0.94510 1.24071 0.95099 0.95320 0.94674 1.21495 0.97573 1.00745 0.94713 1.22451 0.97971 0.96579 0.99004 1.21292 0.97887 0.98305 0.95442 1.23256 0.82827 0.92946 0.98494 0.88988 1.86484 1.15773 1.57692 1.75649 1.22987 0.81670 0.98787 1.02035 0.92182 0.89286 0.89306 0.90049 0.90526 0.75762 0.84418 0.90192 0.89501 0.90762 0.90439 0.90098 0.90676 0.76500 0.90618 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.96 13.22 55.49 0.73 -25.23 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.11 29.55 -169.99 -5.02 16.09 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.54 -15.03 9.50 30.94 0.29 -14.73 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -2.91 5.16 36.01 0.19 -2.73 16 11 C 0.55 10.47 7.87 -10.98 -0.09 10.38 16 12 O -0.51 -11.91 16.19 5.56 0.09 -11.82 16 13 N -0.62 -8.71 3.33 -170.51 -0.57 -9.28 16 14 C 0.10 1.29 6.60 -3.07 -0.02 1.27 16 15 C 0.15 1.46 3.13 -66.09 -0.21 1.26 16 16 H 0.11 1.18 7.69 -51.93 -0.40 0.78 16 17 N -0.70 -6.98 4.78 -53.21 -0.25 -7.24 16 18 C 0.57 6.73 7.79 -12.67 -0.10 6.63 16 19 O -0.54 -8.27 16.49 5.26 0.09 -8.18 16 20 C -0.19 -1.82 6.09 -102.73 -0.63 -2.44 16 21 C -0.07 -0.60 10.43 -36.01 -0.38 -0.98 16 22 C -0.11 -0.62 6.80 -26.86 -0.18 -0.80 16 23 C -0.12 -0.66 7.17 -24.99 -0.18 -0.84 16 24 C -0.09 -0.62 6.04 -26.76 -0.16 -0.78 16 25 C 0.09 0.64 4.22 -24.57 -0.10 0.54 16 26 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 27 O -0.55 -3.41 12.65 -35.23 -0.45 -3.85 16 28 C 0.07 0.65 6.41 -2.52 -0.02 0.64 16 29 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.09 1.61 7.85 -51.92 -0.41 1.21 16 31 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 32 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.08 1.15 8.05 -51.93 -0.42 0.73 16 34 H 0.41 3.40 7.21 -40.82 -0.29 3.10 16 35 H 0.14 1.18 8.03 -52.48 -0.42 0.76 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.45 7.82 -51.93 -0.41 0.04 16 42 H 0.39 0.83 9.12 45.56 0.42 1.24 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.09 0.74 7.48 -51.93 -0.39 0.35 16 LS Contribution 383.45 15.07 5.78 5.78 Total: -1.00 -37.43 383.45 -9.16 -46.59 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -5.67 Total: 1.60 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -1.67 Total: -0.62 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: -0.09 Total: -41.75 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.27 Total: -23.86 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.43 -9.16 -46.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281876841.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.946 kcal (2) G-P(sol) polarization free energy of solvation -37.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds