Wall clock time and date at job start Sat Apr 11 2020 05:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86795 * 120.00056 * 2 1 4 4 H 1.48503 * 109.47420 * 270.00400 * 3 2 1 5 5 H 1.48504 * 109.47183 * 30.00757 * 3 2 1 6 6 H 1.48504 * 109.46991 * 150.00379 * 3 2 1 7 7 C 1.38810 * 119.99636 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99736 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00229 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99934 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47007 * 34.99166 * 10 9 7 12 12 C 1.53003 * 109.46609 * 274.99832 * 10 9 7 13 13 O 1.42902 * 109.46730 * 294.99729 * 12 10 9 14 14 C 1.52996 * 109.47012 * 154.99714 * 10 9 7 15 15 N 1.46498 * 109.47059 * 304.99483 * 14 10 9 16 16 C 1.34777 * 119.99828 * 179.72339 * 15 14 10 17 17 O 1.21283 * 120.00222 * 0.28168 * 16 15 14 18 18 C 1.50703 * 120.00290 * 180.27728 * 16 15 14 19 19 C 1.52990 * 109.47398 * 180.02562 * 18 16 15 20 20 C 1.52995 * 109.47353 * 179.97438 * 19 18 16 21 21 C 1.50702 * 109.47846 * 180.02562 * 20 19 18 22 22 C 1.38238 * 119.98959 * 269.73610 * 21 20 19 23 23 C 1.38209 * 120.01372 * 179.72170 * 22 21 20 24 24 C 1.38352 * 119.98778 * 0.54255 * 23 22 21 25 25 Cl 1.73599 * 120.01493 * 179.70507 * 24 23 22 26 26 C 1.38347 * 119.97213 * 359.72500 * 24 23 22 27 27 C 1.38216 * 119.98763 * 0.02562 * 26 24 23 28 28 H 0.97001 * 119.99765 * 359.97438 * 1 2 3 29 29 H 0.97000 * 119.99675 * 359.97438 * 9 7 2 30 30 H 1.08992 * 109.47566 * 55.00059 * 12 10 9 31 31 H 1.08998 * 109.46886 * 175.00317 * 12 10 9 32 32 H 0.96705 * 113.99732 * 180.02562 * 13 12 10 33 33 H 1.09004 * 109.47066 * 184.99751 * 14 10 9 34 34 H 1.08994 * 109.46974 * 64.99899 * 14 10 9 35 35 H 0.97001 * 120.00384 * 0.02562 * 15 14 10 36 36 H 1.08998 * 109.46954 * 300.00581 * 18 16 15 37 37 H 1.09002 * 109.46946 * 59.99717 * 18 16 15 38 38 H 1.08998 * 109.47508 * 300.00200 * 19 18 16 39 39 H 1.09011 * 109.47182 * 60.00188 * 19 18 16 40 40 H 1.08999 * 109.47616 * 300.00389 * 20 19 18 41 41 H 1.09003 * 109.47280 * 60.00024 * 20 19 18 42 42 H 1.08007 * 119.99190 * 359.97438 * 22 21 20 43 43 H 1.08003 * 120.00915 * 180.26913 * 23 22 21 44 44 H 1.08002 * 120.00735 * 179.97438 * 26 24 23 45 45 H 1.07999 * 119.99588 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 1 2.9688 -3.5505 0.5888 12 6 2.4218 -4.0356 -1.4376 13 8 1.2275 -4.2885 -2.1803 14 6 1.1809 -4.7521 0.6091 15 7 0.7344 -4.3355 1.9408 16 6 -0.0595 -5.1450 2.6693 17 8 -0.4002 -6.2207 2.2245 18 6 -0.5239 -4.7138 4.0366 19 6 -1.4051 -5.8069 4.6442 20 6 -1.8760 -5.3694 6.0325 21 6 -2.7435 -6.4464 6.6314 22 6 -4.1099 -6.4291 6.4221 23 6 -4.9052 -7.4198 6.9664 24 6 -4.3351 -8.4227 7.7301 25 17 -5.3344 -9.6630 8.4204 26 6 -2.9683 -8.4364 7.9438 27 6 -2.1733 -7.4480 7.3948 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3880 0.0002 30 1 2.9714 -3.2165 -1.9013 31 1 3.0423 -4.9317 -1.4312 32 1 1.3826 -4.5352 -3.1025 33 1 1.7558 -5.6746 0.6908 34 1 0.3133 -4.9200 -0.0290 35 1 1.0066 -3.4750 2.2964 36 1 0.3412 -4.5465 4.6781 37 1 -1.0968 -3.7904 3.9512 38 1 -2.2703 -5.9746 4.0028 39 1 -0.8318 -6.7302 4.7296 40 1 -1.0107 -5.2020 6.6738 41 1 -2.4492 -4.4462 5.9476 42 1 -4.5554 -5.6435 5.8298 43 1 -5.9722 -7.4086 6.7992 44 1 -2.5227 -9.2188 8.5403 45 1 -1.1064 -7.4584 7.5619 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283769475.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:10 Heat of formation + Delta-G solvation = -100.536029 kcal Electronic energy + Delta-G solvation = -25830.495131 eV Core-core repulsion = 21872.216278 eV Total energy + Delta-G solvation = -3958.278852 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.77366 -40.29751 -38.62349 -37.55094 -36.40539 -35.68500 -35.11739 -33.16728 -32.03141 -31.99813 -30.10289 -28.12645 -26.26717 -25.55839 -23.78579 -23.51156 -21.75161 -21.60858 -20.97816 -19.40054 -18.19246 -18.15522 -17.73438 -17.22135 -16.98776 -16.50376 -16.32218 -16.12097 -15.60134 -15.37663 -14.96554 -14.86734 -14.65886 -14.59402 -14.44272 -14.27599 -14.18871 -13.65130 -13.48613 -13.07419 -12.88746 -12.71948 -12.68760 -12.64854 -12.35327 -12.22559 -12.09149 -11.97657 -11.86004 -11.78266 -11.71362 -11.53008 -11.02606 -10.77244 -10.70976 -9.98677 -9.93549 -9.49718 -8.98832 -7.88430 -5.17527 0.16838 0.34971 1.16611 1.51515 1.52585 1.60444 1.75464 2.38062 2.59347 2.67819 3.43806 3.62091 3.77099 3.82439 3.88339 3.92214 3.97967 4.06502 4.13921 4.32611 4.40709 4.41589 4.46517 4.57600 4.58651 4.63992 4.72136 4.77945 4.79249 4.93358 4.98595 5.01467 5.02046 5.20996 5.25525 5.28007 5.30034 5.42497 5.55477 5.61352 5.66096 5.88404 6.30353 6.69359 7.06181 7.36006 7.38612 8.10834 8.36514 9.34212 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016621 B = 0.001768 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.252068 B =15829.115331 C =16849.887260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.072 4.072 3 Si 0.969 3.031 4 H -0.296 1.296 5 H -0.300 1.300 6 H -0.266 1.266 7 C -0.235 4.235 8 H 0.081 0.919 9 N -0.721 5.721 10 C 0.161 3.839 11 H 0.080 0.920 12 C 0.063 3.937 13 O -0.585 6.585 14 C 0.130 3.870 15 N -0.714 5.714 16 C 0.503 3.497 17 O -0.594 6.594 18 C -0.134 4.134 19 C -0.088 4.088 20 C -0.076 4.076 21 C -0.081 4.081 22 C -0.114 4.114 23 C -0.118 4.118 24 C -0.055 4.055 25 Cl -0.078 7.078 26 C -0.116 4.116 27 C -0.109 4.109 28 H 0.248 0.752 29 H 0.372 0.628 30 H 0.036 0.964 31 H 0.064 0.936 32 H 0.385 0.615 33 H 0.073 0.927 34 H 0.045 0.955 35 H 0.411 0.589 36 H 0.121 0.879 37 H 0.105 0.895 38 H 0.049 0.951 39 H 0.060 0.940 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.145 0.855 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.352 -14.889 15.768 21.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.264 4.264 3 Si 0.799 3.201 4 H -0.224 1.224 5 H -0.227 1.227 6 H -0.190 1.190 7 C -0.367 4.367 8 H 0.099 0.901 9 N -0.361 5.361 10 C 0.052 3.948 11 H 0.098 0.902 12 C -0.018 4.018 13 O -0.391 6.391 14 C 0.005 3.995 15 N -0.365 5.365 16 C 0.291 3.709 17 O -0.476 6.476 18 C -0.173 4.173 19 C -0.126 4.126 20 C -0.113 4.113 21 C -0.081 4.081 22 C -0.132 4.132 23 C -0.137 4.137 24 C -0.081 4.081 25 Cl -0.050 7.050 26 C -0.135 4.135 27 C -0.127 4.127 28 H 0.057 0.943 29 H 0.204 0.796 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.233 0.767 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.248 0.752 36 H 0.139 0.861 37 H 0.123 0.877 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.114 0.886 41 H 0.104 0.896 42 H 0.160 0.840 43 H 0.159 0.841 44 H 0.163 0.837 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.780 -15.482 16.103 22.511 hybrid contribution 0.049 1.090 -0.899 1.414 sum -2.731 -14.393 15.204 21.114 Atomic orbital electron populations 1.69843 1.06589 1.25742 1.59434 1.25480 0.96166 1.00792 1.03999 0.85216 0.77908 0.80056 0.76953 1.22376 1.22710 1.19038 1.19608 0.91476 0.84823 1.40802 0.90095 1.42463 1.05340 1.00140 1.88141 1.20849 0.95173 0.85399 0.93405 0.90187 1.22898 0.86497 0.98522 0.93834 1.86527 1.32955 1.92058 1.27594 1.21308 0.98179 0.96933 0.83124 1.46064 1.50760 1.22060 1.17641 1.21412 0.77271 0.83744 0.88455 1.90645 1.58417 1.24629 1.73905 1.21719 1.02653 1.01203 0.91755 1.21186 0.98718 0.97470 0.95239 1.20652 0.99443 0.96226 0.95020 1.20222 0.94283 0.96874 0.96694 1.21302 0.93431 0.98906 0.99546 1.21248 1.01370 0.93724 0.97320 1.21107 0.92325 0.93277 1.01423 1.98362 1.69695 1.53247 1.83650 1.21278 0.91424 1.00074 1.00705 1.21314 1.01049 0.93453 0.96884 0.94302 0.79591 0.94536 0.91763 0.76720 0.90836 0.93638 0.75246 0.86115 0.87687 0.93168 0.92109 0.88636 0.89558 0.83978 0.84079 0.83709 0.83218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.68 13.06 21.65 0.28 -56.40 16 2 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 3 Si 0.97 43.72 29.55 68.60 2.03 45.75 16 4 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 5 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 7 C -0.24 -11.91 9.93 84.03 0.83 -11.07 16 8 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16 9 N -0.72 -33.31 4.51 -322.93 -1.46 -34.77 16 10 C 0.16 5.78 2.84 44.99 0.13 5.91 16 11 H 0.08 2.65 8.08 -2.39 -0.02 2.63 16 12 C 0.06 2.05 6.86 71.98 0.49 2.54 16 13 O -0.58 -20.25 12.64 -148.98 -1.88 -22.13 16 14 C 0.13 4.47 5.12 86.38 0.44 4.92 16 15 N -0.71 -23.03 5.39 -463.07 -2.49 -25.53 16 16 C 0.50 15.79 7.83 87.66 0.69 16.47 16 17 O -0.59 -23.09 15.98 -3.04 -0.05 -23.14 16 18 C -0.13 -2.85 5.70 29.85 0.17 -2.68 16 19 C -0.09 -1.80 4.48 30.59 0.14 -1.66 16 20 C -0.08 -1.11 5.34 29.85 0.16 -0.95 16 21 C -0.08 -1.34 5.13 -19.86 -0.10 -1.44 16 22 C -0.11 -1.93 9.70 22.26 0.22 -1.72 16 23 C -0.12 -2.04 9.83 22.29 0.22 -1.82 16 24 C -0.05 -0.98 6.32 22.32 0.14 -0.84 16 25 Cl -0.08 -1.34 28.96 -2.72 -0.08 -1.42 16 26 C -0.12 -1.87 9.83 22.29 0.22 -1.65 16 27 C -0.11 -1.68 9.70 22.27 0.22 -1.46 16 28 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.37 19.61 7.80 -92.71 -0.72 18.89 16 30 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.38 9.34 9.12 -74.05 -0.68 8.66 16 33 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 34 H 0.05 1.85 7.39 -2.39 -0.02 1.83 16 35 H 0.41 13.01 8.14 -92.71 -0.75 12.26 16 36 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.05 1.24 8.10 -2.39 -0.02 1.22 16 39 H 0.06 1.36 8.10 -2.38 -0.02 1.34 16 40 H 0.10 1.05 8.08 -2.39 -0.02 1.03 16 41 H 0.09 1.14 8.08 -2.39 -0.02 1.12 16 42 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 43 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 44 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 45 H 0.15 1.67 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -69.57 397.50 -0.35 -69.93 By element: Atomic # 1 Polarization: 47.70 SS G_CDS: -1.13 Total: 46.57 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 4.43 Total: 1.14 kcal Atomic # 7 Polarization: -113.03 SS G_CDS: -3.67 Total: -116.70 kcal Atomic # 8 Polarization: -43.34 SS G_CDS: -1.93 Total: -45.27 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.08 Total: -1.42 kcal Total: -69.57 -0.35 -69.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283769475.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.607 kcal (2) G-P(sol) polarization free energy of solvation -69.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds