Wall clock time and date at job start Sat Apr 11 2020 05:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86797 * 120.00399 * 2 1 4 4 H 1.48497 * 109.47350 * 239.99838 * 3 2 1 5 5 H 1.48503 * 109.46914 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46985 * 119.99852 * 3 2 1 7 7 C 1.38806 * 119.99477 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99427 * 179.72445 * 7 2 1 9 9 S 1.76190 * 120.00139 * 359.97438 * 7 2 1 10 10 C 1.81010 * 99.99987 * 179.72747 * 9 7 2 11 11 C 1.50695 * 109.46883 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00514 * 359.97438 * 11 10 9 13 13 N 1.34788 * 119.99780 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99794 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.46475 * 175.26103 * 14 13 11 16 16 N 1.46500 * 115.55155 * 278.31598 * 15 14 13 17 17 C 1.34772 * 120.00316 * 294.29061 * 16 15 14 18 18 O 1.21275 * 119.99990 * 355.44853 * 17 16 15 19 19 C 1.50703 * 120.00083 * 175.44509 * 17 16 15 20 20 C 1.53005 * 119.80881 * 250.98257 * 19 17 16 21 21 C 1.53001 * 60.64932 * 247.68736 * 20 19 17 22 22 H 1.09000 * 120.24481 * 112.14496 * 21 20 19 23 23 C 1.54481 * 118.06568 * 269.58781 * 21 20 19 24 24 O 1.44417 * 104.80063 * 86.83286 * 23 21 20 25 25 C 1.43869 * 105.57070 * 319.94081 * 24 23 21 26 26 C 1.53004 * 117.49895 * 132.61892 * 15 14 13 27 27 C 1.52998 * 117.50121 * 63.99692 * 15 14 13 28 28 H 0.96998 * 120.00051 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46857 * 299.99777 * 10 9 7 30 30 H 1.09000 * 109.46794 * 59.99799 * 10 9 7 31 31 H 0.96995 * 119.99486 * 359.97438 * 13 11 10 32 32 H 1.08991 * 109.47237 * 295.25761 * 14 13 11 33 33 H 1.09000 * 109.47385 * 55.26616 * 14 13 11 34 34 H 0.97004 * 119.99494 * 114.28507 * 16 15 14 35 35 H 1.09001 * 117.43061 * 355.36776 * 20 19 17 36 36 H 1.09000 * 117.43142 * 140.01007 * 20 19 17 37 37 H 1.08997 * 110.36776 * 205.66385 * 23 21 20 38 38 H 1.08996 * 110.37318 * 327.88932 * 23 21 20 39 39 H 1.08997 * 109.55700 * 281.17348 * 25 24 23 40 40 H 1.09009 * 110.91920 * 159.01524 * 25 24 23 41 41 H 1.09003 * 117.49472 * 359.97438 * 26 15 14 42 42 H 1.08989 * 117.50363 * 145.01662 * 26 15 14 43 43 H 1.09003 * 117.49441 * 214.97719 * 27 15 14 44 44 H 1.08997 * 117.50018 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1042 1.6963 -1.2124 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0050 9 16 1.1291 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0098 11 6 1.9871 -5.3027 -0.0117 12 8 0.7908 -5.5023 -0.0068 13 7 2.8438 -6.3433 -0.0179 14 6 2.3299 -7.7152 -0.0192 15 6 3.4969 -8.6966 -0.1457 16 7 3.9949 -8.9142 -1.5061 17 6 3.2082 -9.5091 -2.4246 18 8 2.1202 -9.9384 -2.1044 19 6 3.6806 -9.6407 -3.8497 20 6 3.0305 -8.7962 -4.9475 21 6 2.8242 -10.3123 -4.9463 22 1 1.8392 -10.7321 -4.7421 23 6 3.8318 -11.1835 -5.7286 24 8 4.9045 -11.4353 -4.7950 25 6 5.1017 -10.1966 -4.0902 26 6 3.5275 -9.8856 0.8168 27 6 4.5168 -8.7321 0.9942 28 1 -0.4850 0.8400 -0.0004 29 1 3.1202 -3.7292 -0.9022 30 1 3.1283 -3.7338 0.8778 31 1 3.8005 -6.1836 -0.0215 32 1 1.7957 -7.9039 0.9119 33 1 1.6507 -7.8480 -0.8613 34 1 4.8908 -8.6301 -1.7458 35 1 2.1814 -8.1736 -4.6656 36 1 3.6842 -8.3790 -5.7135 37 1 3.3663 -12.1208 -6.0334 38 1 4.2035 -10.6443 -6.5998 39 1 5.6773 -9.5108 -4.7118 40 1 5.6088 -10.3658 -3.1402 41 1 2.7164 -9.9683 1.5404 42 1 3.9181 -10.8299 0.4379 43 1 5.5584 -8.9176 0.7318 44 1 4.3568 -8.0560 1.8340 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285908091.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:22 Heat of formation + Delta-G solvation = -52.830490 kcal Electronic energy + Delta-G solvation = -26732.003357 eV Core-core repulsion = 22777.836879 eV Total energy + Delta-G solvation = -3954.166479 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.34905 -39.94699 -38.86826 -37.56584 -35.05532 -33.96860 -33.23445 -32.43777 -29.78661 -29.35308 -26.53711 -25.90992 -25.43174 -24.30103 -22.96409 -21.69272 -20.57858 -20.30331 -19.83529 -18.06527 -17.87437 -16.93831 -16.40546 -16.22026 -16.09060 -15.72387 -15.40050 -15.04910 -14.93888 -14.81302 -14.67283 -14.31172 -13.91927 -13.78534 -13.29057 -13.15075 -13.02346 -12.74450 -12.54551 -12.43042 -11.93164 -11.79315 -11.74431 -11.35419 -11.16643 -11.05619 -11.04990 -10.81846 -10.76723 -10.73249 -10.22566 -9.93836 -9.84225 -9.55791 -9.27169 -9.07380 -8.88908 -8.24489 -6.50998 -6.22316 -3.93102 2.13254 2.49354 2.90737 2.96644 3.09974 3.21637 3.22252 3.27541 3.39827 3.46568 3.77491 3.87033 3.97816 4.12518 4.19541 4.26180 4.44345 4.48275 4.52852 4.57605 4.79999 5.02655 5.08254 5.12288 5.12570 5.17226 5.20992 5.22056 5.25928 5.40782 5.47864 5.52523 5.63136 5.64591 5.70945 5.86673 5.88671 6.11557 6.16205 6.18611 6.57484 7.08565 7.58017 7.69685 7.87736 8.33908 8.61094 9.22610 10.85051 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014811 B = 0.002290 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.057984 B =12226.415541 C =13141.393329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.152 4.152 11 C 0.530 3.470 12 O -0.516 6.516 13 N -0.736 5.736 14 C 0.155 3.845 15 C 0.085 3.915 16 N -0.694 5.694 17 C 0.566 3.434 18 O -0.520 6.520 19 C -0.214 4.214 20 C -0.104 4.104 21 C -0.156 4.156 22 H 0.133 0.867 23 C 0.072 3.928 24 O -0.368 6.368 25 C 0.088 3.912 26 C -0.157 4.157 27 C -0.166 4.166 28 H 0.269 0.731 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.397 0.603 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.402 0.598 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.100 0.900 43 H 0.103 0.897 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.784 -22.501 -7.115 27.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.303 4.303 11 C 0.316 3.684 12 O -0.390 6.390 13 N -0.391 5.391 14 C 0.030 3.970 15 C -0.003 4.003 16 N -0.346 5.346 17 C 0.352 3.648 18 O -0.394 6.394 19 C -0.218 4.218 20 C -0.141 4.141 21 C -0.175 4.175 22 H 0.151 0.849 23 C -0.004 4.004 24 O -0.287 6.287 25 C 0.011 3.989 26 C -0.195 4.195 27 C -0.204 4.204 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.230 0.770 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.238 0.762 35 H 0.132 0.868 36 H 0.126 0.874 37 H 0.120 0.880 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.115 0.885 41 H 0.125 0.875 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.910 -23.249 -6.850 27.005 hybrid contribution 2.766 1.696 -0.092 3.246 sum 14.676 -21.552 -6.942 26.983 Atomic orbital electron populations 1.70007 1.05954 1.27581 1.46713 1.24997 0.95029 0.99025 0.94548 0.86223 0.79233 0.81256 0.78774 1.19961 1.20805 1.19938 1.22822 0.94847 0.91680 1.59108 0.91004 1.85435 1.04884 0.96264 1.96710 1.23519 1.06553 0.95356 1.04827 1.20326 0.86539 0.86234 0.75263 1.90718 1.15368 1.85564 1.47311 1.45987 1.09846 1.05188 1.78063 1.20901 0.93360 0.79441 1.03345 1.20805 0.98843 1.00902 0.79712 1.45213 1.18125 1.61818 1.09434 1.19040 0.84388 0.76739 0.84679 1.90746 1.21346 1.47015 1.80297 1.23326 0.97050 1.10741 0.90677 1.23212 1.01837 0.92640 0.96405 1.24377 1.01018 0.94609 0.97516 0.84863 1.23012 0.86042 0.99897 0.91457 1.89082 1.54180 1.32425 1.52998 1.22708 0.92189 0.86130 0.97889 1.23340 1.01880 0.93369 1.00948 1.23372 0.95997 1.02270 0.98724 0.92111 0.89346 0.89235 0.76994 0.90552 0.90153 0.76226 0.86814 0.87352 0.87995 0.91315 0.91079 0.88498 0.87500 0.88135 0.87887 0.87017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 7 C -0.54 -15.20 9.50 30.94 0.29 -14.90 16 8 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -3.03 6.16 36.00 0.22 -2.81 16 11 C 0.53 9.94 7.85 -10.98 -0.09 9.86 16 12 O -0.52 -12.00 15.86 5.56 0.09 -11.92 16 13 N -0.74 -9.76 5.51 -60.30 -0.33 -10.10 16 14 C 0.15 1.99 5.64 -4.04 -0.02 1.97 16 15 C 0.08 0.78 1.69 -131.82 -0.22 0.56 16 16 N -0.69 -5.78 5.36 -47.61 -0.26 -6.03 16 17 C 0.57 6.18 7.16 -10.99 -0.08 6.10 16 18 O -0.52 -7.80 16.00 5.56 0.09 -7.71 16 19 C -0.21 -1.80 2.85 -154.09 -0.44 -2.24 16 20 C -0.10 -0.77 9.89 -26.73 -0.26 -1.04 16 21 C -0.16 -1.26 6.90 -89.05 -0.61 -1.87 16 22 H 0.13 1.20 8.14 -51.93 -0.42 0.77 16 23 C 0.07 0.48 7.45 37.93 0.28 0.77 16 24 O -0.37 -3.26 11.62 -35.23 -0.41 -3.67 16 25 C 0.09 0.59 7.06 37.94 0.27 0.86 16 26 C -0.16 -1.28 10.10 -26.73 -0.27 -1.55 16 27 C -0.17 -1.07 10.00 -26.73 -0.27 -1.34 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 30 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 31 H 0.40 3.98 8.37 -40.82 -0.34 3.64 16 32 H 0.08 1.02 7.93 -51.93 -0.41 0.60 16 33 H 0.08 1.30 7.13 -51.93 -0.37 0.93 16 34 H 0.40 2.18 8.45 -40.82 -0.35 1.83 16 35 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.10 0.54 7.75 -51.92 -0.40 0.14 16 41 H 0.11 0.87 8.07 -51.93 -0.42 0.45 16 42 H 0.10 0.81 8.14 -51.94 -0.42 0.39 16 43 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 390.12 15.07 5.88 5.88 Total: -1.00 -37.62 390.12 -9.22 -46.84 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -6.48 Total: 3.37 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -1.30 Total: -3.65 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: 0.15 Total: -41.55 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.23 Total: -23.30 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.62 -9.22 -46.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285908091.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.993 kcal (2) G-P(sol) polarization free energy of solvation -37.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds