Wall clock time and date at job start Sat Apr 11 2020 05:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86806 * 119.99815 * 2 1 4 4 H 1.48500 * 109.47289 * 270.00390 * 3 2 1 5 5 H 1.48504 * 109.46648 * 29.99922 * 3 2 1 6 6 H 1.48495 * 109.47061 * 149.99547 * 3 2 1 7 7 C 1.37876 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99558 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00272 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47239 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47268 * 179.97438 * 10 9 7 12 12 C 1.35405 * 124.78006 * 265.03366 * 11 10 9 13 13 C 1.36470 * 109.76406 * 179.73303 * 12 11 10 14 14 C 1.46734 * 126.77970 * 179.97438 * 13 12 11 15 15 O 1.21594 * 119.99951 * 179.97438 * 14 13 12 16 16 O 1.34844 * 120.00158 * 359.97363 * 14 13 12 17 17 C 1.45195 * 116.99899 * 180.02562 * 16 14 13 18 18 C 1.50704 * 109.46880 * 180.02562 * 17 16 14 19 19 N 1.33236 * 125.52907 * 90.00096 * 18 17 16 20 20 C 1.30825 * 109.83164 * 180.02562 * 19 18 17 21 21 N 1.34431 * 108.08039 * 359.97438 * 20 19 18 22 22 H 0.97000 * 126.83105 * 180.02562 * 21 20 19 23 23 N 1.30719 * 125.52530 * 269.69020 * 18 17 16 24 24 C 1.47479 * 106.43940 * 359.97438 * 13 12 11 25 25 C 1.39254 * 134.00390 * 179.97438 * 24 13 12 26 26 C 1.37761 * 119.67402 * 180.02562 * 25 24 13 27 27 C 1.38747 * 120.29328 * 0.02562 * 26 25 24 28 28 C 1.37768 * 120.63714 * 359.97438 * 27 26 25 29 29 C 1.37980 * 124.76809 * 84.72683 * 11 10 9 30 30 H 0.96994 * 119.99900 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.46818 * 60.00442 * 9 7 2 32 32 H 1.08992 * 109.47190 * 300.00169 * 9 7 2 33 33 H 1.09005 * 109.46470 * 60.00700 * 10 9 7 34 34 H 1.08992 * 109.47552 * 300.00418 * 10 9 7 35 35 H 1.08001 * 125.11329 * 359.72737 * 12 11 10 36 36 H 1.08996 * 109.47308 * 299.99568 * 17 16 14 37 37 H 1.08999 * 109.47589 * 59.99882 * 17 16 14 38 38 H 1.07997 * 125.96598 * 179.97438 * 20 19 18 39 39 H 1.08001 * 120.16567 * 359.97438 * 25 24 13 40 40 H 1.07995 * 119.85352 * 180.02562 * 26 25 24 41 41 H 1.08006 * 119.68406 * 180.02562 * 27 26 25 42 42 H 1.08005 * 120.03781 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0015 11 7 1.5131 -4.9308 0.0032 12 6 1.2115 -5.6470 1.1120 13 6 0.5205 -6.7705 0.7619 14 6 0.0118 -7.8070 1.6675 15 8 -0.5922 -8.7626 1.2196 16 8 0.2141 -7.6999 2.9963 17 6 -0.3164 -8.7624 3.8317 18 6 0.0033 -8.4731 5.2757 19 7 -0.7658 -7.7815 6.1155 20 6 -0.1936 -7.7166 7.2902 21 7 0.9744 -8.3787 7.2225 22 1 1.6164 -8.5000 7.9395 23 7 1.0776 -8.8650 5.9090 24 6 0.3859 -6.7372 -0.7064 25 6 -0.2038 -7.5820 -1.6432 26 6 -0.1544 -7.2571 -2.9810 27 6 0.4796 -6.0948 -3.3960 28 6 1.0671 -5.2500 -2.4799 29 6 1.0282 -5.5610 -1.1245 30 1 -0.4850 0.8400 0.0004 31 1 0.6242 -2.5575 -0.8881 32 1 0.6249 -2.5563 0.8919 33 1 2.8727 -3.6038 0.8911 34 1 2.8715 -3.6047 -0.8889 35 1 1.4779 -5.3707 2.1215 36 1 -1.3973 -8.8197 3.7038 37 1 0.1345 -9.7116 3.5424 38 1 -0.5903 -7.2180 8.1623 39 1 -0.6967 -8.4879 -1.3227 40 1 -0.6111 -7.9099 -3.7100 41 1 0.5121 -5.8494 -4.4473 42 1 1.5584 -4.3480 -2.8137 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327483099.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:42 Heat of formation + Delta-G solvation = 59.575709 kcal Electronic energy + Delta-G solvation = -27682.542836 eV Core-core repulsion = 23630.099456 eV Total energy + Delta-G solvation = -4052.443380 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.46778 -41.27888 -39.79823 -36.92725 -36.26301 -34.10444 -33.23034 -32.42313 -31.87647 -30.47522 -29.13061 -28.87128 -27.68805 -25.26067 -23.30170 -23.01136 -22.55307 -21.74706 -20.81082 -20.41424 -19.77518 -18.76010 -17.58140 -17.02673 -16.50250 -16.34878 -16.07376 -15.56901 -15.39296 -15.23592 -15.00757 -14.80702 -14.27005 -13.99742 -13.64504 -13.41860 -13.01839 -12.95917 -12.63748 -12.51516 -12.47023 -12.27449 -11.82807 -11.45553 -11.22998 -11.09037 -10.77615 -10.73729 -10.69875 -10.59164 -10.39014 -10.34882 -10.25040 -10.05966 -9.94205 -9.44935 -9.27287 -8.55349 -7.98781 -7.43205 -6.18882 -4.25555 1.14134 1.20146 1.77728 2.10091 2.16319 2.32591 3.01124 3.21050 3.21859 3.28671 3.30889 3.43837 3.80827 4.20735 4.26507 4.30640 4.59156 4.88729 4.97118 4.97897 5.15977 5.17652 5.22687 5.30926 5.46298 5.55513 5.73552 5.77314 5.83839 5.91880 5.93164 5.95473 5.99624 6.29085 6.35273 6.52195 6.62541 6.68453 6.84081 6.90078 6.99612 7.30647 7.35359 7.50488 7.51845 7.67808 7.77652 8.05036 8.10342 8.80063 9.40435 10.91899 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.007870 B = 0.003117 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3557.103871 B = 8981.257405 C =12016.447936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.532 4.532 8 H 0.059 0.941 9 C 0.011 3.989 10 C 0.100 3.900 11 N -0.449 5.449 12 C 0.159 3.841 13 C -0.251 4.251 14 C 0.552 3.448 15 O -0.520 6.520 16 O -0.353 6.353 17 C 0.167 3.833 18 C 0.228 3.772 19 N -0.527 5.527 20 C 0.265 3.735 21 N -0.481 5.481 22 H 0.444 0.556 23 N -0.291 5.291 24 C -0.057 4.057 25 C -0.077 4.077 26 C -0.141 4.141 27 C -0.111 4.111 28 C -0.108 4.108 29 C 0.091 3.909 30 H 0.264 0.736 31 H 0.026 0.974 32 H 0.024 0.976 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.181 0.819 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.227 0.773 39 H 0.128 0.872 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.816 -16.530 9.390 19.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.570 4.570 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.019 4.019 11 N -0.125 5.125 12 C 0.022 3.978 13 C -0.260 4.260 14 C 0.399 3.601 15 O -0.410 6.410 16 O -0.269 6.269 17 C 0.090 3.910 18 C -0.054 4.054 19 N -0.256 5.256 20 C -0.034 4.034 21 N -0.200 5.200 22 H 0.290 0.710 23 N -0.123 5.123 24 C -0.060 4.060 25 C -0.096 4.096 26 C -0.159 4.159 27 C -0.130 4.130 28 C -0.128 4.128 29 C -0.013 4.013 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.198 0.802 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.243 0.757 39 H 0.146 0.854 40 H 0.139 0.861 41 H 0.142 0.858 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.870 -16.651 8.762 18.909 hybrid contribution 0.686 1.122 0.998 1.651 sum 2.556 -15.530 9.760 18.519 Atomic orbital electron populations 1.69968 1.06138 1.27126 1.49209 1.25002 0.94863 0.99454 0.94713 0.86513 0.79753 0.83005 0.78275 1.20470 1.21040 1.19739 1.20968 0.93021 0.90252 1.52804 0.92243 1.19466 0.94017 0.90446 0.98696 1.22530 0.95837 0.80317 1.03264 1.44504 1.44057 1.19711 1.04252 1.22308 0.93528 0.89736 0.92254 1.18724 1.16966 0.99121 0.91140 1.19917 0.76166 0.84435 0.79576 1.90803 1.40332 1.32840 1.77051 1.86575 1.73295 1.48021 1.19022 1.20709 1.00618 0.89698 0.79930 1.23649 0.89085 0.95970 0.96739 1.70429 1.32657 1.21883 1.00593 1.26193 0.84413 0.94517 0.98283 1.48171 1.19155 1.41681 1.10996 0.71016 1.78038 1.21747 1.22719 0.89752 1.18603 1.01361 0.95385 0.90685 1.20541 0.98447 0.98914 0.91692 1.20892 1.01895 0.97856 0.95303 1.20772 0.98761 0.94623 0.98837 1.20166 1.02714 1.00747 0.89204 1.18254 1.00684 0.93555 0.88841 0.92604 0.95579 0.95717 0.89680 0.89960 0.80223 0.88074 0.88625 0.75674 0.85422 0.86137 0.85838 0.85633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.63 13.29 55.43 0.74 -24.90 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 20.55 29.54 -169.99 -5.02 15.52 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.53 -13.90 9.11 -34.44 -0.31 -14.21 16 8 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 9 C 0.01 0.27 5.30 -27.89 -0.15 0.12 16 10 C 0.10 1.85 5.89 -4.04 -0.02 1.83 16 11 N -0.45 -8.03 2.74 -114.21 -0.31 -8.34 16 12 C 0.16 2.63 11.04 -16.61 -0.18 2.45 16 13 C -0.25 -4.36 6.27 -103.34 -0.65 -5.01 16 14 C 0.55 9.25 7.93 34.16 0.27 9.52 16 15 O -0.52 -9.34 15.95 -19.34 -0.31 -9.65 16 16 O -0.35 -5.35 10.03 -40.89 -0.41 -5.76 16 17 C 0.17 2.12 6.10 36.01 0.22 2.34 16 18 C 0.23 2.87 7.78 -156.85 -1.22 1.65 16 19 N -0.53 -6.23 11.19 -11.98 -0.13 -6.36 16 20 C 0.27 1.89 13.13 -90.66 -1.19 0.70 16 21 N -0.48 -3.44 7.45 29.53 0.22 -3.22 16 22 H 0.44 1.35 8.96 -182.33 -1.63 -0.29 16 23 N -0.29 -3.38 12.80 32.42 0.41 -2.97 16 24 C -0.06 -1.02 6.27 -104.95 -0.66 -1.68 16 25 C -0.08 -1.25 9.85 -39.38 -0.39 -1.64 16 26 C -0.14 -1.99 10.03 -39.57 -0.40 -2.38 16 27 C -0.11 -1.58 10.01 -39.56 -0.40 -1.98 16 28 C -0.11 -1.79 9.97 -39.43 -0.39 -2.18 16 29 C 0.09 1.64 6.79 -83.96 -0.57 1.07 16 30 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 1.43 8.11 -51.93 -0.42 1.01 16 34 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.18 2.51 8.06 -52.49 -0.42 2.08 16 36 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.23 0.40 8.06 -52.49 -0.42 -0.02 16 39 H 0.13 1.99 7.45 -52.49 -0.39 1.60 16 40 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 41 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 42 H 0.13 2.00 8.06 -52.48 -0.42 1.57 16 LS Contribution 376.79 15.07 5.68 5.68 Total: -1.00 -35.19 376.79 -11.49 -46.68 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.22 Total: 1.10 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -6.14 Total: -7.78 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.92 Total: -45.79 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.72 Total: -15.41 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.19 -11.49 -46.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327483099.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.254 kcal (2) G-P(sol) polarization free energy of solvation -35.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds