Wall clock time and date at job start Sat Apr 11 2020 05:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.87386 * 2 1 4 4 C 1.54325 * 110.01280 * 121.10419 * 2 1 3 5 5 C 1.55154 * 102.94046 * 141.68007 * 4 2 1 6 6 H 1.09004 * 111.00349 * 82.57183 * 5 4 2 7 7 N 1.46904 * 111.00265 * 206.38467 * 5 4 2 8 8 C 1.46904 * 110.99931 * 205.00327 * 7 5 4 9 9 C 1.52997 * 109.47097 * 179.97438 * 8 7 5 10 10 C 1.52997 * 109.47213 * 180.02562 * 9 8 7 11 11 F 1.39901 * 109.47460 * 59.99893 * 10 9 8 12 12 F 1.39906 * 109.47116 * 180.02562 * 10 9 8 13 13 F 1.39906 * 109.47092 * 299.99796 * 10 9 8 14 14 C 1.55128 * 101.48987 * 324.33396 * 5 4 2 15 15 N 1.47023 * 109.87754 * 238.98971 * 2 1 3 16 16 C 1.34777 * 125.65065 * 61.45402 * 15 2 1 17 17 O 1.21274 * 120.00135 * 0.27097 * 16 15 2 18 18 C 1.50706 * 119.99766 * 179.97438 * 16 15 2 19 19 S 1.81003 * 109.46851 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99843 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00031 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99637 * 180.02562 * 20 19 18 23 23 N 1.31633 * 119.99688 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00458 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47358 * 89.99657 * 24 22 20 26 26 H 1.48498 * 109.47273 * 210.00381 * 24 22 20 27 27 H 1.48505 * 109.46671 * 329.99771 * 24 22 20 28 28 H 1.09008 * 109.47100 * 179.55700 * 1 2 3 29 29 H 1.08998 * 109.47056 * 299.55480 * 1 2 3 30 30 H 1.08995 * 109.47202 * 59.55913 * 1 2 3 31 31 H 1.08994 * 110.71826 * 260.04698 * 4 2 1 32 32 H 1.09005 * 110.71896 * 23.13952 * 4 2 1 33 33 H 1.00903 * 110.99703 * 328.95564 * 7 5 4 34 34 H 1.08995 * 109.47226 * 300.00107 * 8 7 5 35 35 H 1.08998 * 109.47019 * 59.99827 * 8 7 5 36 36 H 1.09004 * 109.46962 * 300.00185 * 9 8 7 37 37 H 1.08998 * 109.47314 * 60.00024 * 9 8 7 38 38 H 1.08999 * 110.49560 * 278.45217 * 14 5 4 39 39 H 1.08992 * 110.34389 * 156.06287 * 14 5 4 40 40 H 1.09000 * 109.47161 * 299.99737 * 18 16 15 41 41 H 1.09001 * 109.46740 * 59.99879 * 18 16 15 42 42 H 0.97002 * 120.00245 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0582 -0.7491 1.2416 5 6 3.2918 -1.5108 0.6891 6 1 4.1682 -0.8635 0.6563 7 7 3.5623 -2.7188 1.4801 8 6 4.9759 -3.1064 1.3823 9 6 5.2185 -4.3651 2.2176 10 6 6.6909 -4.7684 2.1164 11 9 7.4936 -3.7281 2.5967 12 9 6.9126 -5.9197 2.8798 13 9 7.0128 -5.0267 0.7796 14 6 2.8130 -1.8793 -0.7397 15 7 2.0299 -0.7123 -1.1850 16 6 1.8048 -0.3600 -2.4663 17 8 1.1424 0.6243 -2.7172 18 6 2.3820 -1.1857 -3.5873 19 16 1.9060 -0.4618 -5.1765 20 6 2.6910 -1.5935 -6.2754 21 1 3.2551 -2.4258 -5.8812 22 6 2.5852 -1.4146 -7.6478 23 7 3.1721 -2.2598 -8.4688 24 14 1.6113 0.0261 -8.3297 25 1 2.5100 1.1964 -8.4968 26 1 1.0330 -0.3459 -9.6459 27 1 0.5164 0.3732 -7.3884 28 1 -0.3634 -1.0277 -0.0079 29 1 -0.3633 0.5069 0.8939 30 1 -0.3633 0.5206 -0.8860 31 1 2.3557 -0.0454 2.0189 32 1 1.3092 -1.4451 1.6196 33 1 3.2885 -2.5896 2.4426 34 1 5.2264 -3.3073 0.3408 35 1 5.6015 -2.2962 1.7567 36 1 4.9681 -4.1637 3.2592 37 1 4.5929 -5.1755 1.8437 38 1 2.1852 -2.7700 -0.7140 39 1 3.6681 -2.0358 -1.3972 40 1 3.4688 -1.2005 -3.5053 41 1 1.9987 -2.2041 -3.5229 42 1 3.0985 -2.1346 -9.4279 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331957047.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:50 Heat of formation + Delta-G solvation = -193.936623 kcal Electronic energy + Delta-G solvation = -27108.729719 eV Core-core repulsion = 22606.587679 eV Total energy + Delta-G solvation = -4502.142040 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.48755 -48.00063 -47.95010 -40.22396 -38.00323 -36.15754 -32.69702 -32.43134 -32.21110 -29.36258 -28.75641 -26.01971 -25.60697 -25.23343 -22.63625 -22.07129 -21.18561 -19.09495 -18.94087 -18.75596 -17.80974 -17.65286 -17.07837 -16.53012 -15.92709 -15.29467 -15.06003 -14.95171 -14.84343 -14.76492 -14.46330 -14.36524 -14.33321 -14.10562 -14.09931 -13.69503 -13.66369 -13.24930 -13.09072 -12.80511 -12.65359 -12.57715 -12.26592 -12.15989 -11.92379 -11.85118 -11.49048 -11.26011 -11.15592 -11.00212 -10.93127 -10.59589 -9.85092 -9.49154 -9.09679 -8.99751 -8.58655 -8.49184 -6.91480 -6.28174 -3.99950 2.29117 2.66840 2.94525 3.09716 3.28459 3.33744 3.50652 3.51100 3.59946 3.62039 3.85333 4.10185 4.29069 4.33959 4.38851 4.43400 4.67686 4.72237 4.80037 4.91845 5.04238 5.10819 5.15036 5.17644 5.24973 5.32590 5.37430 5.46996 5.54074 5.60006 5.67754 5.79071 5.97732 6.02445 6.19585 6.37430 6.47304 6.73383 7.58554 7.94916 8.42570 8.44765 9.17952 10.81074 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.011198 B = 0.002582 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.853918 B =10839.722380 C =13033.269438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.139 3.861 3 H 0.074 0.926 4 C -0.130 4.130 5 C 0.072 3.928 6 H 0.069 0.931 7 N -0.673 5.673 8 C 0.053 3.947 9 C -0.165 4.165 10 C 0.454 3.546 11 F -0.185 7.185 12 F -0.185 7.185 13 F -0.180 7.180 14 C 0.111 3.889 15 N -0.621 5.621 16 C 0.549 3.451 17 O -0.516 6.516 18 C -0.118 4.118 19 S -0.142 6.142 20 C -0.520 4.520 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.348 0.652 34 H 0.091 0.909 35 H 0.047 0.953 36 H 0.108 0.892 37 H 0.121 0.879 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.152 -3.219 28.302 28.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.035 3.965 3 H 0.092 0.908 4 C -0.168 4.168 5 C -0.038 4.038 6 H 0.087 0.913 7 N -0.305 5.305 8 C -0.077 4.077 9 C -0.204 4.204 10 C 0.399 3.601 11 F -0.167 7.167 12 F -0.166 7.166 13 F -0.161 7.161 14 C -0.013 4.013 15 N -0.359 5.359 16 C 0.337 3.663 17 O -0.390 6.390 18 C -0.268 4.268 19 S 0.084 5.916 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.167 0.833 34 H 0.109 0.891 35 H 0.066 0.934 36 H 0.126 0.874 37 H 0.139 0.861 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.022 -2.225 27.143 27.309 hybrid contribution 1.272 -0.219 0.328 1.332 sum 3.294 -2.444 27.471 27.775 Atomic orbital electron populations 1.22140 0.94557 1.02424 1.02971 1.21417 0.94933 0.96235 0.83866 0.90751 1.22937 0.97354 0.99430 0.97071 1.22729 0.97501 0.89675 0.93910 0.91326 1.60247 1.18411 1.35566 1.16261 1.21993 0.89641 0.94660 1.01367 1.22828 0.89900 1.02599 1.05066 1.20511 0.91062 0.74737 0.73771 1.93193 1.76931 1.58371 1.88202 1.93201 1.95906 1.51412 1.76081 1.93228 1.94252 1.94055 1.34588 1.22299 0.95812 0.89200 0.93976 1.48505 1.53771 1.28816 1.04819 1.19953 0.79828 0.84985 0.81490 1.90688 1.38822 1.26875 1.82617 1.23269 1.03965 1.02530 0.97080 1.84769 1.70672 1.40543 0.95620 1.22307 1.37658 1.14019 0.92813 0.89390 1.24711 0.94565 0.96215 0.95808 1.69940 1.42221 1.36031 1.03502 0.86735 0.82265 0.82765 0.80095 1.19225 1.19947 1.15909 0.92416 0.92023 0.90788 0.90145 0.89303 0.83316 0.89056 0.93446 0.87350 0.86069 0.90129 0.90491 0.88694 0.88540 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.11 37.16 0.34 -1.46 16 2 C 0.14 1.50 3.45 -66.95 -0.23 1.27 16 3 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 4 C -0.13 -0.88 5.88 -24.90 -0.15 -1.02 16 5 C 0.07 0.52 3.39 -65.45 -0.22 0.30 16 6 H 0.07 0.51 7.83 -51.93 -0.41 0.11 16 7 N -0.67 -3.66 6.41 -104.34 -0.67 -4.33 16 8 C 0.05 0.29 5.30 -3.82 -0.02 0.27 16 9 C -0.17 -0.71 5.52 -26.73 -0.15 -0.86 16 10 C 0.45 3.10 3.16 37.16 0.12 3.22 16 11 F -0.19 -1.44 16.80 2.25 0.04 -1.41 16 12 F -0.18 -1.43 17.32 2.25 0.04 -1.39 16 13 F -0.18 -1.58 16.80 2.25 0.04 -1.54 16 14 C 0.11 1.15 6.40 -2.41 -0.02 1.13 16 15 N -0.62 -8.35 3.06 -162.88 -0.50 -8.84 16 16 C 0.55 10.00 7.66 -10.98 -0.08 9.92 16 17 O -0.52 -11.14 14.90 5.56 0.08 -11.06 16 18 C -0.12 -2.33 5.16 36.01 0.19 -2.15 16 19 S -0.14 -3.64 18.55 -107.50 -1.99 -5.63 16 20 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 21 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 22 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 23 N -0.88 -26.67 13.97 55.49 0.78 -25.89 16 24 Si 0.86 21.87 27.74 -169.99 -4.72 17.16 16 25 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 28 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 1.06 6.88 -51.93 -0.36 0.70 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.55 7.85 -51.93 -0.41 0.14 16 33 H 0.35 1.25 8.44 -39.29 -0.33 0.92 16 34 H 0.09 0.62 7.80 -51.93 -0.41 0.21 16 35 H 0.05 0.25 7.74 -51.93 -0.40 -0.15 16 36 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.08 0.82 7.48 -51.93 -0.39 0.43 16 40 H 0.09 1.76 7.85 -51.92 -0.41 1.36 16 41 H 0.10 1.81 8.14 -51.91 -0.42 1.38 16 42 H 0.27 7.61 8.31 -40.82 -0.34 7.28 16 LS Contribution 370.42 15.07 5.58 5.58 Total: -1.00 -34.02 370.42 -7.40 -41.42 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -6.07 Total: -2.65 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -0.01 Total: -1.41 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: -0.39 Total: -39.07 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.08 Total: -11.06 kcal Atomic # 9 Polarization: -4.45 SS G_CDS: 0.11 Total: -4.34 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.72 Total: 17.16 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.02 -7.40 -41.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331957047.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.519 kcal (2) G-P(sol) polarization free energy of solvation -34.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds