Wall clock time and date at job start Sat Apr 11 2020 05:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.87386 * 2 1 4 4 C 1.54325 * 110.01280 * 121.10419 * 2 1 3 5 5 C 1.55154 * 102.94046 * 141.68007 * 4 2 1 6 6 H 1.09004 * 111.00349 * 82.57183 * 5 4 2 7 7 N 1.46904 * 111.00265 * 206.38467 * 5 4 2 8 8 C 1.46904 * 110.99931 * 205.00327 * 7 5 4 9 9 C 1.52997 * 109.47097 * 179.97438 * 8 7 5 10 10 C 1.52997 * 109.47213 * 180.02562 * 9 8 7 11 11 F 1.39901 * 109.47460 * 59.99893 * 10 9 8 12 12 F 1.39906 * 109.47116 * 180.02562 * 10 9 8 13 13 F 1.39906 * 109.47092 * 299.99796 * 10 9 8 14 14 C 1.55128 * 101.48987 * 324.33396 * 5 4 2 15 15 N 1.47023 * 109.87754 * 238.98971 * 2 1 3 16 16 C 1.34777 * 125.65065 * 61.45402 * 15 2 1 17 17 O 1.21274 * 120.00135 * 0.27097 * 16 15 2 18 18 C 1.50706 * 119.99766 * 179.97438 * 16 15 2 19 19 S 1.81003 * 109.46851 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99843 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00031 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99637 * 180.02562 * 20 19 18 23 23 N 1.31633 * 119.99688 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00458 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47358 * 89.99657 * 24 22 20 26 26 H 1.48498 * 109.47273 * 210.00381 * 24 22 20 27 27 H 1.48505 * 109.46671 * 329.99771 * 24 22 20 28 28 H 1.09008 * 109.47100 * 179.55700 * 1 2 3 29 29 H 1.08998 * 109.47056 * 299.55480 * 1 2 3 30 30 H 1.08995 * 109.47202 * 59.55913 * 1 2 3 31 31 H 1.08994 * 110.71826 * 260.04698 * 4 2 1 32 32 H 1.09005 * 110.71896 * 23.13952 * 4 2 1 33 33 H 1.00903 * 110.99703 * 328.95564 * 7 5 4 34 34 H 1.08995 * 109.47226 * 300.00107 * 8 7 5 35 35 H 1.08998 * 109.47019 * 59.99827 * 8 7 5 36 36 H 1.09004 * 109.46962 * 300.00185 * 9 8 7 37 37 H 1.08998 * 109.47314 * 60.00024 * 9 8 7 38 38 H 1.08999 * 110.49560 * 278.45217 * 14 5 4 39 39 H 1.08992 * 110.34389 * 156.06287 * 14 5 4 40 40 H 1.09000 * 109.47161 * 299.99737 * 18 16 15 41 41 H 1.09001 * 109.46740 * 59.99879 * 18 16 15 42 42 H 0.97002 * 120.00245 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0582 -0.7491 1.2416 5 6 3.2918 -1.5108 0.6891 6 1 4.1682 -0.8635 0.6563 7 7 3.5623 -2.7188 1.4801 8 6 4.9759 -3.1064 1.3823 9 6 5.2185 -4.3651 2.2176 10 6 6.6909 -4.7684 2.1164 11 9 7.4936 -3.7281 2.5967 12 9 6.9126 -5.9197 2.8798 13 9 7.0128 -5.0267 0.7796 14 6 2.8130 -1.8793 -0.7397 15 7 2.0299 -0.7123 -1.1850 16 6 1.8048 -0.3600 -2.4663 17 8 1.1424 0.6243 -2.7172 18 6 2.3820 -1.1857 -3.5873 19 16 1.9060 -0.4618 -5.1765 20 6 2.6910 -1.5935 -6.2754 21 1 3.2551 -2.4258 -5.8812 22 6 2.5852 -1.4146 -7.6478 23 7 3.1721 -2.2598 -8.4688 24 14 1.6113 0.0261 -8.3297 25 1 2.5100 1.1964 -8.4968 26 1 1.0330 -0.3459 -9.6459 27 1 0.5164 0.3732 -7.3884 28 1 -0.3634 -1.0277 -0.0079 29 1 -0.3633 0.5069 0.8939 30 1 -0.3633 0.5206 -0.8860 31 1 2.3557 -0.0454 2.0189 32 1 1.3092 -1.4451 1.6196 33 1 3.2885 -2.5896 2.4426 34 1 5.2264 -3.3073 0.3408 35 1 5.6015 -2.2962 1.7567 36 1 4.9681 -4.1637 3.2592 37 1 4.5929 -5.1755 1.8437 38 1 2.1852 -2.7700 -0.7140 39 1 3.6681 -2.0358 -1.3972 40 1 3.4688 -1.2005 -3.5053 41 1 1.9987 -2.2041 -3.5229 42 1 3.0985 -2.1346 -9.4279 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331957047.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:50 Heat of formation + Delta-G solvation = -217.240538 kcal Electronic energy + Delta-G solvation = -27109.740253 eV Core-core repulsion = 22606.587679 eV Total energy + Delta-G solvation = -4503.152574 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.06119 -48.57271 -48.55546 -41.29451 -39.04333 -36.87201 -34.68995 -33.50928 -33.09180 -30.43848 -29.79544 -27.87093 -26.85656 -25.79915 -23.37391 -22.80404 -21.86796 -20.40074 -19.54473 -19.48819 -19.33275 -18.35261 -18.19380 -17.53677 -17.12694 -16.56970 -16.49410 -16.02536 -15.71325 -15.64242 -15.40965 -15.09770 -14.97434 -14.95417 -14.75600 -14.71712 -14.70475 -14.37376 -14.31249 -14.12310 -13.59433 -13.37309 -13.32281 -13.08502 -13.04429 -12.96651 -12.70578 -12.59651 -12.40253 -12.09658 -11.90733 -11.87458 -11.66157 -11.18597 -10.94000 -10.56488 -9.76402 -9.52537 -9.02572 -8.52973 -6.24467 0.94650 1.30251 1.43939 1.51499 1.52090 1.80104 2.03179 2.23854 2.63633 2.73890 2.85102 3.03269 3.13474 3.27018 3.45547 3.56804 3.82219 3.95747 4.00194 4.07962 4.14408 4.19800 4.36041 4.41191 4.41825 4.47425 4.65185 4.71666 4.77477 4.83084 4.84115 4.92042 5.00609 5.15961 5.29671 5.47718 5.69245 5.86880 6.09600 6.34554 6.43916 6.91838 7.07259 8.59583 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.011198 B = 0.002582 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.853918 B =10839.722380 C =13033.269438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.129 3.871 3 H 0.068 0.932 4 C -0.112 4.112 5 C 0.084 3.916 6 H 0.071 0.929 7 N -0.668 5.668 8 C 0.053 3.947 9 C -0.153 4.153 10 C 0.449 3.551 11 F -0.192 7.192 12 F -0.191 7.191 13 F -0.195 7.195 14 C 0.101 3.899 15 N -0.612 5.612 16 C 0.548 3.452 17 O -0.558 6.558 18 C -0.104 4.104 19 S -0.172 6.172 20 C -0.529 4.529 21 H 0.060 0.940 22 C 0.046 3.954 23 N -0.916 5.916 24 Si 0.915 3.085 25 H -0.262 1.262 26 H -0.258 1.258 27 H -0.237 1.237 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.034 0.966 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.365 0.635 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.135 0.865 37 H 0.127 0.873 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.653 -2.945 31.170 31.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.026 3.974 3 H 0.086 0.914 4 C -0.150 4.150 5 C -0.027 4.027 6 H 0.089 0.911 7 N -0.302 5.302 8 C -0.076 4.076 9 C -0.192 4.192 10 C 0.395 3.605 11 F -0.174 7.174 12 F -0.172 7.172 13 F -0.177 7.177 14 C -0.022 4.022 15 N -0.347 5.347 16 C 0.336 3.664 17 O -0.436 6.436 18 C -0.254 4.254 19 S 0.055 5.945 20 C -0.677 4.677 21 H 0.079 0.921 22 C -0.159 4.159 23 N -0.554 5.554 24 Si 0.737 3.263 25 H -0.186 1.186 26 H -0.182 1.182 27 H -0.161 1.161 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.053 0.947 31 H 0.128 0.872 32 H 0.122 0.878 33 H 0.186 0.814 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.153 0.847 37 H 0.145 0.855 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.540 -1.987 30.072 30.177 hybrid contribution 1.507 -0.406 -0.407 1.613 sum 3.047 -2.393 29.665 29.917 Atomic orbital electron populations 1.22088 0.94669 1.02325 1.02502 1.21742 0.94953 0.96435 0.84241 0.91421 1.22898 0.97019 0.99680 0.95407 1.22541 0.97789 0.90299 0.92054 0.91142 1.60110 1.18393 1.34475 1.17239 1.21941 0.89664 0.95339 1.00668 1.22802 0.87738 1.02132 1.06494 1.20942 0.92265 0.74374 0.72916 1.93177 1.77400 1.58585 1.88200 1.93187 1.96046 1.51846 1.76147 1.93198 1.94508 1.94162 1.35834 1.22574 0.95338 0.88142 0.96196 1.48451 1.52773 1.29444 1.03983 1.19564 0.79735 0.84346 0.82753 1.90670 1.40880 1.28522 1.83534 1.23222 1.04786 1.02863 0.94569 1.84656 1.70718 1.40532 0.98611 1.22436 1.37466 1.13905 0.93886 0.92131 1.25568 0.95502 0.98705 0.96160 1.70017 1.43531 1.37722 1.04168 0.85862 0.80932 0.79663 0.79888 1.18633 1.18179 1.16074 0.92208 0.89090 0.94693 0.87233 0.87846 0.81387 0.90802 0.93007 0.84722 0.85460 0.89726 0.91103 0.87583 0.87560 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 9.11 71.98 0.66 -2.56 16 2 C 0.13 2.51 3.45 45.34 0.16 2.67 16 3 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 4 C -0.11 -1.05 5.88 31.78 0.19 -0.87 16 5 C 0.08 0.95 3.39 46.38 0.16 1.10 16 6 H 0.07 0.83 7.83 -2.39 -0.02 0.81 16 7 N -0.67 -4.86 6.41 -484.02 -3.10 -7.96 16 8 C 0.05 0.44 5.30 86.30 0.46 0.90 16 9 C -0.15 -0.90 5.52 30.59 0.17 -0.74 16 10 C 0.45 5.51 3.16 71.98 0.23 5.74 16 11 F -0.19 -2.73 16.80 44.97 0.76 -1.97 16 12 F -0.19 -2.71 17.32 44.97 0.78 -1.93 16 13 F -0.20 -3.34 16.80 44.97 0.76 -2.59 16 14 C 0.10 1.90 6.40 86.93 0.56 2.46 16 15 N -0.61 -15.72 3.06 -787.62 -2.41 -18.13 16 16 C 0.55 19.98 7.66 87.66 0.67 20.65 16 17 O -0.56 -24.50 14.90 -3.01 -0.04 -24.55 16 18 C -0.10 -4.13 5.16 71.24 0.37 -3.76 16 19 S -0.17 -8.89 18.55 -56.49 -1.05 -9.94 16 20 C -0.53 -31.36 10.04 67.96 0.68 -30.67 16 21 H 0.06 3.79 8.03 -2.91 -0.02 3.77 16 22 C 0.05 2.74 5.50 84.86 0.47 3.21 16 23 N -0.92 -56.36 13.97 21.65 0.30 -56.06 16 24 Si 0.91 45.47 27.74 68.60 1.90 47.38 16 25 H -0.26 -12.67 7.11 99.48 0.71 -11.97 16 26 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 27 H -0.24 -11.76 6.74 99.48 0.67 -11.09 16 28 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.03 0.99 6.88 -2.39 -0.02 0.98 16 31 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.10 0.76 7.85 -2.38 -0.02 0.74 16 33 H 0.36 0.87 8.44 -89.69 -0.76 0.11 16 34 H 0.07 0.89 7.80 -2.39 -0.02 0.88 16 35 H 0.05 0.41 7.74 -2.39 -0.02 0.39 16 36 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.07 1.44 7.48 -2.39 -0.02 1.42 16 40 H 0.11 3.96 7.85 -2.39 -0.02 3.94 16 41 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 42 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -76.21 370.42 2.89 -73.32 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: 0.25 Total: 4.31 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 4.75 Total: -1.88 kcal Atomic # 7 Polarization: -76.94 SS G_CDS: -5.21 Total: -82.15 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.04 Total: -24.55 kcal Atomic # 9 Polarization: -8.78 SS G_CDS: 2.29 Total: -6.49 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.90 Total: 47.38 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -1.05 Total: -9.94 kcal Total: -76.21 2.89 -73.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331957047.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.916 kcal (2) G-P(sol) polarization free energy of solvation -76.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds