Wall clock time and date at job start Sat Apr 11 2020 05:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34224 * 117.00206 * 2 1 4 4 O 1.20829 * 120.00177 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99765 * 179.97438 * 3 2 1 6 6 C 1.50708 * 109.47121 * 180.02562 * 5 3 2 7 7 C 1.38388 * 119.92577 * 270.02333 * 6 5 3 8 8 C 1.38332 * 120.29485 * 180.02562 * 7 6 5 9 9 C 1.37976 * 120.14710 * 359.67394 * 8 7 6 10 10 C 1.39573 * 119.84859 * 0.58182 * 9 8 7 11 11 C 1.47808 * 120.14323 * 179.71894 * 10 9 8 12 12 O 1.21555 * 119.99634 * 179.72092 * 11 10 9 13 13 N 1.34778 * 120.00483 * 359.72612 * 11 10 9 14 14 C 1.39173 * 120.00282 * 185.61383 * 13 11 10 15 15 C 1.39705 * 119.57505 * 18.94869 * 14 13 11 16 16 C 1.38644 * 119.49281 * 180.02562 * 15 14 13 17 17 C 1.38353 * 118.66917 * 359.72713 * 16 15 14 18 18 C 1.40574 * 119.13499 * 0.52989 * 17 16 15 19 19 C 1.41332 * 119.78843 * 179.73213 * 18 17 16 20 20 H 1.08008 * 120.00103 * 7.00954 * 19 18 17 21 21 C 1.40032 * 120.00560 * 187.01034 * 19 18 17 22 22 N 1.30734 * 120.00301 * 181.89617 * 21 19 18 23 23 Si 1.86802 * 119.99355 * 1.89411 * 21 19 18 24 24 H 1.48506 * 109.46810 * 180.02562 * 23 21 19 25 25 H 1.48496 * 109.47376 * 299.99818 * 23 21 19 26 26 H 1.48494 * 109.47247 * 60.00384 * 23 21 19 27 27 N 1.31917 * 119.57870 * 198.96531 * 14 13 11 28 28 C 1.37925 * 119.92357 * 90.00011 * 6 5 3 29 29 H 1.08993 * 109.47720 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47254 * 300.00154 * 1 2 3 31 31 H 1.09003 * 109.47287 * 59.99622 * 1 2 3 32 32 H 1.09004 * 109.47397 * 60.00431 * 5 3 2 33 33 H 1.08995 * 109.47455 * 300.00048 * 5 3 2 34 34 H 1.07999 * 119.85155 * 0.02562 * 7 6 5 35 35 H 1.08000 * 119.93055 * 180.02562 * 8 7 6 36 36 H 1.08004 * 120.07396 * 180.32017 * 9 8 7 37 37 H 0.96999 * 119.99561 * 5.60772 * 13 11 10 38 38 H 1.08002 * 120.25030 * 359.97438 * 15 14 13 39 39 H 1.08000 * 120.66446 * 180.02562 * 16 15 14 40 40 H 1.08005 * 120.43477 * 180.28639 * 17 16 15 41 41 H 0.96998 * 120.00582 * 354.82792 * 22 21 19 42 42 H 1.07995 * 120.08001 * 0.02562 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 6 3.9937 2.7199 0.0011 7 6 4.1895 3.3823 -1.1980 8 6 4.5823 4.7087 -1.2065 9 6 4.7751 5.3819 -0.0176 10 6 4.5846 4.7182 1.1953 11 6 4.7952 5.4313 2.4727 12 8 4.6236 4.8521 3.5276 13 7 5.1775 6.7237 2.4681 14 6 5.4889 7.3617 3.6651 15 6 5.7918 6.5979 4.7950 16 6 6.1012 7.2352 5.9868 17 6 6.1058 8.6184 6.0181 18 6 5.7870 9.3305 4.8488 19 6 5.7820 10.7437 4.8667 20 1 6.1310 11.2740 5.7405 21 6 5.3244 11.4566 3.7516 22 7 5.3544 12.7636 3.7539 23 14 4.6714 10.5398 2.2608 24 1 4.2533 11.5165 1.2232 25 1 5.7370 9.6625 1.7132 26 1 3.5052 9.7119 2.6605 27 7 5.4939 8.6798 3.7184 28 6 4.1884 3.3794 1.1967 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 3.9564 0.7804 -0.8892 33 1 3.9557 0.7807 0.8908 34 1 4.0349 2.8615 -2.1314 35 1 4.7330 5.2201 -2.1457 36 1 5.0768 6.4189 -0.0256 37 1 5.2356 7.2092 1.6303 38 1 5.7841 5.5193 4.7407 39 1 6.3387 6.6634 6.8717 40 1 6.3474 9.1442 6.9301 41 1 5.6225 13.2412 4.5544 42 1 4.0353 2.8613 2.1318 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001438838712.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:44 Heat of formation + Delta-G solvation = -63.233000 kcal Electronic energy + Delta-G solvation = -27885.318820 eV Core-core repulsion = 23795.257304 eV Total energy + Delta-G solvation = -4090.061517 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.96745 -40.42971 -39.09545 -37.93410 -36.76556 -34.72160 -33.72453 -33.24013 -31.43154 -31.13940 -29.63366 -28.96442 -27.17739 -25.48229 -24.44055 -22.70032 -21.96364 -21.72909 -21.12524 -19.69500 -18.44861 -17.98686 -17.96996 -17.00411 -16.83855 -16.51802 -16.31010 -15.46080 -15.18862 -15.00683 -14.91562 -14.36016 -13.98451 -13.93508 -13.79238 -13.62215 -13.49644 -13.10095 -12.77672 -12.51357 -12.48925 -12.37193 -12.24958 -11.94453 -11.80764 -11.38836 -11.16597 -11.15482 -10.85219 -10.82021 -10.39245 -10.03898 -9.67675 -9.37071 -9.17043 -9.14612 -9.10804 -8.57762 -7.83007 -7.41907 -7.26219 -4.79542 0.63707 1.04405 1.88067 2.24396 2.43571 2.62374 3.03402 3.18961 3.53161 3.62165 3.75939 3.95937 4.13816 4.36345 4.45102 4.57358 4.58773 4.64129 4.75179 4.79132 4.83986 4.86465 5.00182 5.06381 5.17435 5.29414 5.50359 5.52810 5.70588 5.83369 6.02438 6.03352 6.08519 6.12225 6.16235 6.43135 6.50078 6.53484 6.61053 7.09973 7.16229 7.41080 7.42319 7.54266 7.57780 7.73400 8.08990 8.24120 8.39963 8.63000 9.37385 9.98795 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017291 B = 0.002584 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.914571 B =10831.390277 C =11522.539220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.458 3.542 4 O -0.493 6.493 5 C -0.070 4.070 6 C -0.093 4.093 7 C -0.078 4.078 8 C -0.123 4.123 9 C -0.079 4.079 10 C -0.126 4.126 11 C 0.560 3.440 12 O -0.509 6.509 13 N -0.649 5.649 14 C 0.387 3.613 15 C -0.309 4.309 16 C -0.035 4.035 17 C -0.275 4.275 18 C 0.273 3.727 19 C -0.475 4.475 20 H 0.084 0.916 21 C 0.043 3.957 22 N -0.806 5.806 23 Si 1.155 2.845 24 H -0.332 1.332 25 H -0.285 1.285 26 H -0.293 1.293 27 N -0.598 5.598 28 C -0.040 4.040 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.126 0.874 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.407 0.593 38 H 0.139 0.861 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.283 0.717 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.679 -22.974 -12.412 26.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.279 6.279 3 C 0.300 3.700 4 O -0.379 6.379 5 C -0.107 4.107 6 C -0.094 4.094 7 C -0.096 4.096 8 C -0.141 4.141 9 C -0.098 4.098 10 C -0.129 4.129 11 C 0.348 3.652 12 O -0.385 6.385 13 N -0.294 5.294 14 C 0.157 3.843 15 C -0.334 4.334 16 C -0.059 4.059 17 C -0.297 4.297 18 C 0.149 3.851 19 C -0.507 4.507 20 H 0.102 0.898 21 C -0.178 4.178 22 N -0.427 5.427 23 Si 0.991 3.009 24 H -0.265 1.265 25 H -0.213 1.213 26 H -0.221 1.221 27 N -0.324 5.324 28 C -0.059 4.059 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.144 0.856 35 H 0.151 0.849 36 H 0.149 0.851 37 H 0.244 0.756 38 H 0.157 0.843 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.095 0.905 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.750 -22.299 -13.802 26.652 hybrid contribution 0.629 -0.086 2.124 2.217 sum -4.122 -22.385 -11.678 25.583 Atomic orbital electron populations 1.23279 0.76100 1.03703 1.02761 1.86487 1.23632 1.33454 1.84352 1.23703 0.91953 0.81476 0.72916 1.90741 1.66994 1.36211 1.43962 1.20280 0.87971 0.95363 1.07091 1.19150 1.02339 0.94332 0.93538 1.21169 0.96466 0.94712 0.97242 1.21060 1.00386 0.94486 0.98155 1.21472 0.96558 0.99924 0.91825 1.19848 1.05224 0.95085 0.92728 1.18165 0.76872 0.81202 0.89005 1.90698 1.49087 1.66966 1.31749 1.43175 1.65389 1.11454 1.09412 1.18052 0.92744 0.88782 0.84759 1.21519 1.17926 1.00879 0.93094 1.20931 0.94491 0.94144 0.96305 1.21615 1.15167 0.93836 0.99117 1.18271 0.87541 0.93521 0.85754 1.20726 1.36798 0.89993 1.03200 0.89799 1.27762 0.91100 0.95195 1.03755 1.70636 1.32297 1.08496 1.31304 0.81815 0.76851 0.70624 0.71581 1.26527 1.21321 1.22123 1.65923 1.30523 1.06865 1.29105 1.21063 0.93849 0.92833 0.98135 0.88043 0.91734 0.91855 0.86424 0.86316 0.85563 0.84908 0.85135 0.75638 0.84323 0.87495 0.87586 0.90550 0.84480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.05 10.56 -39.24 -0.41 -3.46 16 3 C 0.46 4.42 7.95 36.00 0.29 4.71 16 4 O -0.49 -6.62 15.78 -18.75 -0.30 -6.91 16 5 C -0.07 -0.48 5.94 -29.03 -0.17 -0.65 16 6 C -0.09 -0.91 4.37 -104.68 -0.46 -1.37 16 7 C -0.08 -0.68 9.69 -39.49 -0.38 -1.07 16 8 C -0.12 -1.15 10.03 -39.64 -0.40 -1.55 16 9 C -0.08 -0.92 9.54 -39.18 -0.37 -1.29 16 10 C -0.13 -1.76 5.87 -104.97 -0.62 -2.38 16 11 C 0.56 10.04 7.61 -12.35 -0.09 9.95 16 12 O -0.51 -10.39 13.15 5.32 0.07 -10.32 16 13 N -0.65 -12.62 5.35 -12.27 -0.07 -12.68 16 14 C 0.39 9.09 7.51 -155.05 -1.16 7.93 16 15 C -0.31 -7.08 8.83 -38.88 -0.34 -7.43 16 16 C -0.03 -0.76 10.15 -39.39 -0.40 -1.16 16 17 C -0.27 -6.62 9.83 -38.66 -0.38 -7.00 16 18 C 0.27 7.26 6.39 -85.00 -0.54 6.72 16 19 C -0.47 -13.04 9.58 -37.73 -0.36 -13.40 16 20 H 0.08 2.29 8.05 -52.48 -0.42 1.86 16 21 C 0.04 1.18 5.52 -17.35 -0.10 1.08 16 22 N -0.81 -22.02 13.65 55.55 0.76 -21.26 16 23 Si 1.16 28.30 25.53 -169.99 -4.34 23.96 16 24 H -0.33 -8.00 7.11 56.52 0.40 -7.59 16 25 H -0.28 -6.64 6.70 56.52 0.38 -6.26 16 26 H -0.29 -7.35 7.10 56.52 0.40 -6.95 16 27 N -0.60 -15.40 4.58 -10.27 -0.05 -15.44 16 28 C -0.04 -0.49 9.24 -39.18 -0.36 -0.86 16 29 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 31 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 32 H 0.12 0.46 8.09 -51.93 -0.42 0.04 16 33 H 0.12 0.62 8.08 -51.93 -0.42 0.20 16 34 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.13 1.36 6.42 -52.48 -0.34 1.03 16 37 H 0.41 6.95 6.88 -40.82 -0.28 6.67 16 38 H 0.14 3.08 5.33 -52.50 -0.28 2.80 16 39 H 0.11 2.00 8.06 -52.49 -0.42 1.58 16 40 H 0.11 2.37 8.06 -52.48 -0.42 1.95 16 41 H 0.28 7.40 8.72 -40.82 -0.36 7.05 16 42 H 0.14 1.69 7.65 -52.49 -0.40 1.28 16 LS Contribution 363.99 15.07 5.49 5.49 Total: -1.00 -34.38 363.99 -8.34 -42.72 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -4.70 Total: 4.41 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -4.79 Total: -6.48 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: 0.65 Total: -49.39 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.64 Total: -20.70 kcal Atomic # 14 Polarization: 28.30 SS G_CDS: -4.34 Total: 23.96 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.38 -8.34 -42.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001438838712.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.517 kcal (2) G-P(sol) polarization free energy of solvation -34.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds