Wall clock time and date at job start Sat Apr 11 2020 05:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34224 * 117.00206 * 2 1 4 4 O 1.20829 * 120.00177 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99765 * 179.97438 * 3 2 1 6 6 C 1.50708 * 109.47121 * 180.02562 * 5 3 2 7 7 C 1.38388 * 119.92577 * 270.02333 * 6 5 3 8 8 C 1.38332 * 120.29485 * 180.02562 * 7 6 5 9 9 C 1.37976 * 120.14710 * 359.67394 * 8 7 6 10 10 C 1.39573 * 119.84859 * 0.58182 * 9 8 7 11 11 C 1.47808 * 120.14323 * 179.71894 * 10 9 8 12 12 O 1.21555 * 119.99634 * 179.72092 * 11 10 9 13 13 N 1.34778 * 120.00483 * 359.72612 * 11 10 9 14 14 C 1.39173 * 120.00282 * 185.61383 * 13 11 10 15 15 C 1.39705 * 119.57505 * 18.94869 * 14 13 11 16 16 C 1.38644 * 119.49281 * 180.02562 * 15 14 13 17 17 C 1.38353 * 118.66917 * 359.72713 * 16 15 14 18 18 C 1.40574 * 119.13499 * 0.52989 * 17 16 15 19 19 C 1.41332 * 119.78843 * 179.73213 * 18 17 16 20 20 H 1.08008 * 120.00103 * 7.00954 * 19 18 17 21 21 C 1.40032 * 120.00560 * 187.01034 * 19 18 17 22 22 N 1.30734 * 120.00301 * 181.89617 * 21 19 18 23 23 Si 1.86802 * 119.99355 * 1.89411 * 21 19 18 24 24 H 1.48506 * 109.46810 * 180.02562 * 23 21 19 25 25 H 1.48496 * 109.47376 * 299.99818 * 23 21 19 26 26 H 1.48494 * 109.47247 * 60.00384 * 23 21 19 27 27 N 1.31917 * 119.57870 * 198.96531 * 14 13 11 28 28 C 1.37925 * 119.92357 * 90.00011 * 6 5 3 29 29 H 1.08993 * 109.47720 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47254 * 300.00154 * 1 2 3 31 31 H 1.09003 * 109.47287 * 59.99622 * 1 2 3 32 32 H 1.09004 * 109.47397 * 60.00431 * 5 3 2 33 33 H 1.08995 * 109.47455 * 300.00048 * 5 3 2 34 34 H 1.07999 * 119.85155 * 0.02562 * 7 6 5 35 35 H 1.08000 * 119.93055 * 180.02562 * 8 7 6 36 36 H 1.08004 * 120.07396 * 180.32017 * 9 8 7 37 37 H 0.96999 * 119.99561 * 5.60772 * 13 11 10 38 38 H 1.08002 * 120.25030 * 359.97438 * 15 14 13 39 39 H 1.08000 * 120.66446 * 180.02562 * 16 15 14 40 40 H 1.08005 * 120.43477 * 180.28639 * 17 16 15 41 41 H 0.96998 * 120.00582 * 354.82792 * 22 21 19 42 42 H 1.07995 * 120.08001 * 0.02562 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 6 3.9937 2.7199 0.0011 7 6 4.1895 3.3823 -1.1980 8 6 4.5823 4.7087 -1.2065 9 6 4.7751 5.3819 -0.0176 10 6 4.5846 4.7182 1.1953 11 6 4.7952 5.4313 2.4727 12 8 4.6236 4.8521 3.5276 13 7 5.1775 6.7237 2.4681 14 6 5.4889 7.3617 3.6651 15 6 5.7918 6.5979 4.7950 16 6 6.1012 7.2352 5.9868 17 6 6.1058 8.6184 6.0181 18 6 5.7870 9.3305 4.8488 19 6 5.7820 10.7437 4.8667 20 1 6.1310 11.2740 5.7405 21 6 5.3244 11.4566 3.7516 22 7 5.3544 12.7636 3.7539 23 14 4.6714 10.5398 2.2608 24 1 4.2533 11.5165 1.2232 25 1 5.7370 9.6625 1.7132 26 1 3.5052 9.7119 2.6605 27 7 5.4939 8.6798 3.7184 28 6 4.1884 3.3794 1.1967 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 3.9564 0.7804 -0.8892 33 1 3.9557 0.7807 0.8908 34 1 4.0349 2.8615 -2.1314 35 1 4.7330 5.2201 -2.1457 36 1 5.0768 6.4189 -0.0256 37 1 5.2356 7.2092 1.6303 38 1 5.7841 5.5193 4.7407 39 1 6.3387 6.6634 6.8717 40 1 6.3474 9.1442 6.9301 41 1 5.6225 13.2412 4.5544 42 1 4.0353 2.8613 2.1318 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001438838712.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:43 Heat of formation + Delta-G solvation = -83.305866 kcal Electronic energy + Delta-G solvation = -27886.189245 eV Core-core repulsion = 23795.257304 eV Total energy + Delta-G solvation = -4090.931941 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.01695 -41.53149 -40.37249 -39.36954 -37.50727 -36.39805 -35.49405 -34.18285 -33.04608 -32.40947 -31.22001 -29.77127 -27.78787 -27.36519 -25.71400 -23.78856 -23.47394 -23.15411 -22.05893 -21.15276 -20.27674 -19.36694 -18.67293 -18.21512 -17.59007 -17.51167 -17.23804 -17.04325 -16.71068 -16.28242 -16.15875 -15.88266 -15.48408 -15.06558 -14.86425 -14.62930 -14.56122 -14.42659 -14.27013 -14.15180 -13.77083 -13.43333 -13.12940 -13.02404 -12.94260 -12.74947 -12.50869 -12.28928 -12.14780 -11.83884 -11.80174 -11.65497 -11.61732 -11.18687 -10.89881 -10.46235 -10.03337 -9.91359 -9.79294 -9.30545 -9.26291 -6.85397 -0.33193 0.24144 0.57701 0.70147 1.18380 1.51456 1.59385 1.67064 1.74143 1.92363 2.02322 2.40544 2.62775 2.81895 3.38365 3.47386 3.52605 3.84538 3.94476 4.01562 4.06454 4.21919 4.25242 4.31480 4.32631 4.34793 4.49164 4.60164 4.62128 4.65948 4.71585 4.72715 4.78867 4.95579 5.21168 5.31408 5.33729 5.35174 5.38102 5.39124 5.41061 5.67415 5.76486 5.85250 5.88884 6.21783 6.35820 6.60197 6.72732 6.90118 7.43696 7.92428 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017291 B = 0.002584 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.914571 B =10831.390277 C =11522.539220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.459 3.541 4 O -0.539 6.539 5 C -0.066 4.066 6 C -0.094 4.094 7 C -0.067 4.067 8 C -0.120 4.120 9 C -0.087 4.087 10 C -0.152 4.152 11 C 0.561 3.439 12 O -0.541 6.541 13 N -0.649 5.649 14 C 0.375 3.625 15 C -0.307 4.307 16 C -0.026 4.026 17 C -0.289 4.289 18 C 0.256 3.744 19 C -0.505 4.505 20 H 0.071 0.929 21 C 0.015 3.985 22 N -0.827 5.827 23 Si 1.185 2.815 24 H -0.326 1.326 25 H -0.270 1.270 26 H -0.306 1.306 27 N -0.612 5.612 28 C -0.053 4.053 29 H 0.132 0.868 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.158 0.842 33 H 0.137 0.863 34 H 0.164 0.836 35 H 0.164 0.836 36 H 0.137 0.863 37 H 0.417 0.583 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.118 0.882 41 H 0.282 0.718 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.572 -26.362 -14.779 30.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C 0.303 3.697 4 O -0.428 6.428 5 C -0.103 4.103 6 C -0.094 4.094 7 C -0.085 4.085 8 C -0.138 4.138 9 C -0.105 4.105 10 C -0.155 4.155 11 C 0.352 3.648 12 O -0.419 6.419 13 N -0.295 5.295 14 C 0.144 3.856 15 C -0.332 4.332 16 C -0.050 4.050 17 C -0.311 4.311 18 C 0.131 3.869 19 C -0.538 4.538 20 H 0.089 0.911 21 C -0.202 4.202 22 N -0.450 5.450 23 Si 1.018 2.982 24 H -0.259 1.259 25 H -0.198 1.198 26 H -0.235 1.235 27 N -0.338 5.338 28 C -0.072 4.072 29 H 0.150 0.850 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.175 0.825 33 H 0.155 0.845 34 H 0.181 0.819 35 H 0.182 0.818 36 H 0.154 0.846 37 H 0.255 0.745 38 H 0.166 0.834 39 H 0.164 0.836 40 H 0.136 0.864 41 H 0.093 0.907 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.627 -25.721 -16.194 30.744 hybrid contribution 0.549 0.667 2.846 2.975 sum -4.078 -25.053 -13.348 28.679 Atomic orbital electron populations 1.23504 0.75154 1.05600 1.02226 1.86490 1.24636 1.32813 1.83841 1.24234 0.92924 0.81062 0.71438 1.90731 1.68159 1.37608 1.46338 1.20439 0.86024 0.93928 1.09894 1.19443 1.01348 0.95777 0.92848 1.21685 0.93937 0.94545 0.98313 1.21458 0.99061 0.94875 0.98386 1.21644 0.96628 1.00407 0.91853 1.19624 1.08686 0.95787 0.91423 1.18859 0.75305 0.80381 0.90298 1.90647 1.50528 1.67344 1.33355 1.43244 1.65593 1.12089 1.08588 1.18421 0.92264 0.88358 0.86546 1.21872 1.16495 1.01473 0.93316 1.21350 0.92620 0.93599 0.97461 1.21797 1.15578 0.94828 0.98898 1.18486 0.87808 0.93565 0.87003 1.20720 1.38947 0.90800 1.03310 0.91051 1.28487 0.91025 0.95483 1.05195 1.70652 1.34131 1.08702 1.31492 0.81441 0.76347 0.70048 0.70348 1.25925 1.19763 1.23470 1.65914 1.30837 1.07968 1.29094 1.21147 0.94469 0.92424 0.99143 0.84964 0.92800 0.91937 0.82470 0.84538 0.81884 0.81802 0.84570 0.74485 0.83418 0.83551 0.86379 0.90724 0.85406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.51 16 2 O -0.36 -5.23 10.56 -51.36 -0.54 -5.78 16 3 C 0.46 7.84 7.95 71.23 0.57 8.41 16 4 O -0.54 -13.83 15.78 21.95 0.35 -13.48 16 5 C -0.07 -0.68 5.94 29.10 0.17 -0.50 16 6 C -0.09 -1.56 4.37 -19.90 -0.09 -1.65 16 7 C -0.07 -0.90 9.69 22.33 0.22 -0.68 16 8 C -0.12 -1.82 10.03 22.23 0.22 -1.60 16 9 C -0.09 -1.85 9.54 22.53 0.21 -1.64 16 10 C -0.15 -4.15 5.87 -20.09 -0.12 -4.26 16 11 C 0.56 20.05 7.61 86.78 0.66 20.71 16 12 O -0.54 -22.14 13.15 -3.89 -0.05 -22.19 16 13 N -0.65 -25.02 5.35 -311.01 -1.66 -26.68 16 14 C 0.37 17.49 7.51 133.29 1.00 18.49 16 15 C -0.31 -13.77 8.83 22.72 0.20 -13.57 16 16 C -0.03 -1.12 10.15 22.39 0.23 -0.89 16 17 C -0.29 -13.81 9.83 22.87 0.22 -13.59 16 18 C 0.26 13.80 6.39 40.19 0.26 14.06 16 19 C -0.50 -28.58 9.58 23.47 0.22 -28.35 16 20 H 0.07 4.07 8.05 -2.91 -0.02 4.05 16 21 C 0.02 0.84 5.52 85.29 0.47 1.31 16 22 N -0.83 -46.39 13.65 21.84 0.30 -46.09 16 23 Si 1.18 57.99 25.53 68.60 1.75 59.74 16 24 H -0.33 -15.44 7.11 99.48 0.71 -14.73 16 25 H -0.27 -12.38 6.70 99.48 0.67 -11.72 16 26 H -0.31 -15.45 7.10 99.48 0.71 -14.74 16 27 N -0.61 -31.57 4.58 -186.41 -0.85 -32.42 16 28 C -0.05 -1.25 9.24 22.53 0.21 -1.04 16 29 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.05 0.72 8.13 -2.39 -0.02 0.70 16 31 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 32 H 0.16 0.39 8.09 -2.38 -0.02 0.37 16 33 H 0.14 0.96 8.08 -2.39 -0.02 0.94 16 34 H 0.16 1.02 8.06 -2.91 -0.02 0.99 16 35 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 36 H 0.14 2.64 6.42 -2.91 -0.02 2.62 16 37 H 0.42 14.02 6.88 -92.71 -0.64 13.38 16 38 H 0.15 6.42 5.33 -3.15 -0.02 6.40 16 39 H 0.15 5.03 8.06 -2.91 -0.02 5.01 16 40 H 0.12 5.25 8.06 -2.91 -0.02 5.22 16 41 H 0.28 15.28 8.72 -92.71 -0.81 14.48 16 42 H 0.13 3.14 7.65 -2.91 -0.02 3.12 16 Total: -1.00 -76.92 363.99 5.50 -71.42 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.36 Total: 18.77 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 5.86 Total: -3.28 kcal Atomic # 7 Polarization: -102.98 SS G_CDS: -2.22 Total: -105.20 kcal Atomic # 8 Polarization: -41.20 SS G_CDS: -0.25 Total: -41.45 kcal Atomic # 14 Polarization: 57.99 SS G_CDS: 1.75 Total: 59.74 kcal Total: -76.92 5.50 -71.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001438838712.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.886 kcal (2) G-P(sol) polarization free energy of solvation -76.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds