Wall clock time and date at job start Sat Apr 11 2020 05:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34770 * 116.99948 * 2 1 4 4 O 1.21525 * 119.99779 * 0.02562 * 3 2 1 5 5 C 1.47288 * 120.00182 * 179.97438 * 3 2 1 6 6 C 1.39803 * 120.21223 * 2.54419 * 5 3 2 7 7 C 1.37722 * 119.91687 * 180.29691 * 6 5 3 8 8 C 1.38625 * 120.36430 * 359.67263 * 7 6 5 9 9 C 1.37953 * 120.43691 * 0.02731 * 8 7 6 10 10 C 1.38962 * 120.06615 * 359.97438 * 9 8 7 11 11 N 1.38831 * 120.17684 * 180.02562 * 10 9 8 12 12 N 1.40102 * 120.00226 * 354.60292 * 11 10 9 13 13 C 1.34773 * 120.00108 * 179.97438 * 12 11 10 14 14 O 1.21611 * 119.99650 * 0.02562 * 13 12 11 15 15 C 1.47425 * 120.00198 * 179.97438 * 13 12 11 16 16 C 1.39222 * 120.28218 * 355.48888 * 15 13 12 17 17 C 1.38218 * 120.09425 * 179.97438 * 16 15 13 18 18 C 1.38825 * 120.67681 * 359.95708 * 17 16 15 19 19 C 1.37602 * 120.56745 * 0.02562 * 18 17 16 20 20 C 1.40701 * 119.88479 * 0.02562 * 19 18 17 21 21 C 1.40888 * 120.33263 * 179.97438 * 20 19 18 22 22 H 1.07996 * 120.00384 * 139.36345 * 21 20 19 23 23 C 1.40276 * 119.99598 * 319.37247 * 21 20 19 24 24 N 1.30631 * 119.99926 * 170.23978 * 23 21 20 25 25 Si 1.86801 * 120.00089 * 350.22929 * 23 21 20 26 26 H 1.48504 * 109.47012 * 87.71835 * 25 23 21 27 27 H 1.48501 * 109.46899 * 207.71806 * 25 23 21 28 28 H 1.48497 * 109.47081 * 327.71931 * 25 23 21 29 29 H 1.08999 * 109.47620 * 299.99797 * 1 2 3 30 30 H 1.08994 * 109.47284 * 60.00171 * 1 2 3 31 31 H 1.08999 * 109.46882 * 180.02562 * 1 2 3 32 32 H 1.08000 * 120.04427 * 359.97306 * 6 5 3 33 33 H 1.07998 * 119.81884 * 179.70081 * 7 6 5 34 34 H 1.08000 * 119.78684 * 180.02562 * 8 7 6 35 35 H 1.07997 * 119.96629 * 180.02562 * 9 8 7 36 36 H 0.96998 * 119.99528 * 174.59777 * 11 10 9 37 37 H 0.96996 * 119.99674 * 359.97438 * 12 11 10 38 38 H 1.07997 * 119.95325 * 359.97438 * 16 15 13 39 39 H 1.07998 * 119.66562 * 179.97438 * 17 16 15 40 40 H 1.08000 * 119.72032 * 180.02562 * 18 17 16 41 41 H 1.08003 * 120.05415 * 179.74128 * 19 18 17 42 42 H 0.96995 * 120.00268 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4019 2.2200 0.0005 5 6 3.5346 1.2780 0.0006 6 6 4.3004 0.1095 -0.0525 7 6 5.6753 0.1884 -0.0455 8 6 6.3062 1.4217 0.0072 9 6 5.5651 2.5843 0.0537 10 6 4.1767 2.5257 0.0475 11 7 3.4287 3.6943 0.0938 12 7 4.0684 4.9295 0.2608 13 6 3.3422 6.0640 0.3051 14 8 2.1316 6.0154 0.2007 15 6 4.0154 7.3637 0.4814 16 6 5.3898 7.4190 0.6964 17 6 6.0170 8.6397 0.8606 18 6 5.2902 9.8215 0.8130 19 6 3.9306 9.7989 0.6018 20 6 3.2678 8.5694 0.4327 21 6 1.8760 8.5353 0.2164 22 1 1.4580 7.8465 -0.5027 23 6 1.0333 9.3962 0.9350 24 7 -0.2260 9.5033 0.6048 25 14 1.7118 10.3891 2.3644 26 1 2.2606 11.6731 1.8588 27 1 0.6235 10.6646 3.3365 28 1 2.7906 9.6192 3.0340 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.8144 -0.8541 -0.0937 33 1 6.2653 -0.7154 -0.0817 34 1 7.3850 1.4728 0.0118 35 1 6.0644 3.5411 0.0942 36 1 2.4630 3.6556 0.0104 37 1 5.0340 4.9681 0.3444 38 1 5.9667 6.5069 0.7348 39 1 7.0834 8.6746 1.0274 40 1 5.7961 10.7668 0.9429 41 1 3.3727 10.7232 0.5705 42 1 -0.8089 10.0982 1.1019 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001446812342.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:51 Heat of formation + Delta-G solvation = -42.627822 kcal Electronic energy + Delta-G solvation = -28531.739555 eV Core-core repulsion = 24442.571546 eV Total energy + Delta-G solvation = -4089.168009 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.95611 -41.04311 -39.93361 -38.85486 -37.72227 -36.83444 -35.54596 -33.53420 -32.50378 -32.35096 -31.52987 -29.43142 -28.46479 -27.21612 -25.11522 -24.52625 -23.35207 -22.61270 -22.51142 -21.26707 -19.86182 -19.28131 -18.79962 -18.39359 -17.97688 -17.51370 -17.48548 -17.02923 -16.16611 -16.07187 -15.85155 -15.77579 -15.58469 -15.26518 -14.86435 -14.75943 -14.57198 -14.42921 -14.40225 -14.13346 -13.82553 -13.34715 -13.24059 -12.88005 -12.72673 -12.63866 -12.58998 -12.26884 -12.24426 -12.07612 -11.93429 -11.69175 -11.53980 -11.11566 -10.66017 -10.43571 -10.09121 -9.65506 -9.45261 -8.85430 -8.36471 -6.52776 -0.26504 0.21318 0.56747 0.78693 0.95141 1.21112 1.34474 1.43504 1.44472 1.64214 2.06711 2.11518 2.65681 2.84676 3.23122 3.43502 3.64456 3.79009 4.02971 4.11772 4.17807 4.24480 4.24621 4.41769 4.44303 4.45990 4.56026 4.65058 4.68330 4.78974 4.93672 4.96663 5.09892 5.16284 5.26145 5.34737 5.40918 5.56995 5.60245 5.67684 5.81044 5.88950 6.01053 6.20943 6.38305 6.44562 6.52639 6.68048 6.72290 6.78939 7.48146 8.22066 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013288 B = 0.003312 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.590678 B = 8452.175910 C =10316.449565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.346 6.346 3 C 0.509 3.491 4 O -0.559 6.559 5 C -0.242 4.242 6 C -0.003 4.003 7 C -0.189 4.189 8 C -0.010 4.010 9 C -0.229 4.229 10 C 0.256 3.744 11 N -0.533 5.533 12 N -0.526 5.526 13 C 0.551 3.449 14 O -0.571 6.571 15 C -0.254 4.254 16 C -0.042 4.042 17 C -0.217 4.217 18 C -0.057 4.057 19 C -0.239 4.239 20 C 0.105 3.895 21 C -0.450 4.450 22 H 0.054 0.946 23 C 0.034 3.966 24 N -0.856 5.856 25 Si 0.969 3.031 26 H -0.237 1.237 27 H -0.279 1.279 28 H -0.254 1.254 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.145 0.855 32 H 0.158 0.842 33 H 0.166 0.834 34 H 0.170 0.830 35 H 0.139 0.861 36 H 0.432 0.568 37 H 0.429 0.571 38 H 0.142 0.858 39 H 0.153 0.847 40 H 0.144 0.856 41 H 0.108 0.892 42 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.279 -17.809 1.519 24.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.261 6.261 3 C 0.359 3.641 4 O -0.452 6.452 5 C -0.250 4.250 6 C -0.022 4.022 7 C -0.209 4.209 8 C -0.029 4.029 9 C -0.253 4.253 10 C 0.145 3.855 11 N -0.265 5.265 12 N -0.277 5.277 13 C 0.344 3.656 14 O -0.450 6.450 15 C -0.260 4.260 16 C -0.060 4.060 17 C -0.236 4.236 18 C -0.076 4.076 19 C -0.258 4.258 20 C 0.101 3.899 21 C -0.479 4.479 22 H 0.073 0.927 23 C -0.179 4.179 24 N -0.483 5.483 25 Si 0.790 3.210 26 H -0.161 1.161 27 H -0.206 1.206 28 H -0.178 1.178 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.163 0.837 32 H 0.175 0.825 33 H 0.184 0.816 34 H 0.187 0.813 35 H 0.156 0.844 36 H 0.286 0.714 37 H 0.275 0.725 38 H 0.160 0.840 39 H 0.171 0.829 40 H 0.161 0.839 41 H 0.126 0.874 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 14.876 -17.300 1.453 22.863 hybrid contribution -1.455 0.672 0.167 1.611 sum 13.422 -16.629 1.620 21.431 Atomic orbital electron populations 1.23580 0.74649 1.06064 1.02167 1.86506 1.24827 1.30764 1.84032 1.21597 0.89696 0.81411 0.71354 1.90585 1.67490 1.36860 1.50254 1.18492 0.88098 0.93802 1.24585 1.21459 0.94576 0.96099 0.90055 1.21340 0.93497 0.99326 1.06755 1.21616 1.01726 0.90603 0.88943 1.20775 0.89517 1.01571 1.13389 1.18244 0.92598 0.83019 0.91612 1.44880 1.09792 0.95038 1.76779 1.44916 1.09210 0.96486 1.77094 1.18885 0.86686 0.83575 0.76447 1.90823 1.16003 1.86695 1.51437 1.19505 0.95485 0.89883 1.21113 1.21248 0.91192 0.99335 0.94269 1.21029 1.00703 0.91156 1.10701 1.21359 0.92712 0.99631 0.93856 1.21386 0.95958 0.96025 1.12450 1.17748 0.92906 0.91456 0.87789 1.19644 0.91831 1.16066 1.20364 0.92749 1.27087 0.94747 0.95357 1.00677 1.69630 1.07302 1.32715 1.38625 0.85483 0.78535 0.79742 0.77278 1.16070 1.20584 1.17755 0.92683 0.92539 0.83738 0.82482 0.81628 0.81254 0.84377 0.71403 0.72531 0.84009 0.82908 0.83870 0.87448 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.57 113.37 1.20 1.77 16 2 O -0.35 -8.61 9.82 -56.80 -0.56 -9.17 16 3 C 0.51 16.29 7.88 70.20 0.55 16.85 16 4 O -0.56 -23.02 13.42 19.75 0.27 -22.76 16 5 C -0.24 -6.64 5.89 -19.99 -0.12 -6.76 16 6 C 0.00 -0.06 9.61 22.53 0.22 0.16 16 7 C -0.19 -2.42 10.02 22.24 0.22 -2.20 16 8 C -0.01 -0.14 10.03 22.29 0.22 0.09 16 9 C -0.23 -4.84 9.45 22.38 0.21 -4.62 16 10 C 0.26 7.65 6.72 38.73 0.26 7.91 16 11 N -0.53 -20.85 6.29 -50.93 -0.32 -21.17 16 12 N -0.53 -20.11 6.16 -175.88 -1.08 -21.19 16 13 C 0.55 27.28 7.84 86.66 0.68 27.96 16 14 O -0.57 -35.07 13.54 -4.07 -0.06 -35.13 16 15 C -0.25 -11.82 5.92 -19.70 -0.12 -11.94 16 16 C -0.04 -1.43 9.52 22.50 0.21 -1.22 16 17 C -0.22 -6.69 10.03 22.41 0.22 -6.46 16 18 C -0.06 -1.99 10.01 22.26 0.22 -1.77 16 19 C -0.24 -10.69 7.21 22.72 0.16 -10.53 16 20 C 0.11 5.53 4.92 -21.11 -0.10 5.43 16 21 C -0.45 -27.80 7.98 23.41 0.19 -27.61 16 22 H 0.05 3.89 6.46 -2.91 -0.02 3.87 16 23 C 0.03 1.99 5.47 85.37 0.47 2.46 16 24 N -0.86 -51.77 13.92 21.88 0.30 -51.47 16 25 Si 0.97 44.44 24.68 68.60 1.69 46.13 16 26 H -0.24 -9.63 6.61 99.48 0.66 -8.97 16 27 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 28 H -0.25 -11.71 7.05 99.48 0.70 -11.01 16 29 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.16 2.11 7.61 -2.91 -0.02 2.08 16 33 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 34 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 35 H 0.14 2.45 6.23 -2.91 -0.02 2.43 16 36 H 0.43 20.05 4.51 -215.69 -0.97 19.08 16 37 H 0.43 12.25 4.67 -213.32 -1.00 11.25 16 38 H 0.14 3.44 6.42 -2.91 -0.02 3.42 16 39 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 40 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 41 H 0.11 4.78 5.39 -2.91 -0.02 4.77 16 42 H 0.29 15.81 8.29 -92.71 -0.77 15.04 16 Total: -1.00 -85.96 353.92 4.04 -81.93 By element: Atomic # 1 Polarization: 44.24 SS G_CDS: -0.92 Total: 43.32 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: 4.71 Total: -10.50 kcal Atomic # 7 Polarization: -92.73 SS G_CDS: -1.10 Total: -93.83 kcal Atomic # 8 Polarization: -66.71 SS G_CDS: -0.35 Total: -67.05 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.69 Total: 46.13 kcal Total: -85.96 4.04 -81.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001446812342.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.298 kcal (2) G-P(sol) polarization free energy of solvation -85.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds