Wall clock time and date at job start Sat Apr 11 2020 05:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34763 * 116.99885 * 2 1 4 4 O 1.21526 * 120.00045 * 359.97438 * 3 2 1 5 5 C 1.47295 * 119.99913 * 180.02562 * 3 2 1 6 6 C 1.39913 * 120.18234 * 5.87342 * 5 3 2 7 7 C 1.37705 * 120.05898 * 180.02562 * 6 5 3 8 8 C 1.38587 * 120.42034 * 0.02562 * 7 6 5 9 9 C 1.38504 * 120.36280 * 359.97438 * 8 7 6 10 10 N 1.40030 * 120.03001 * 179.97438 * 9 8 7 11 11 C 1.34776 * 119.99548 * 334.07688 * 10 9 8 12 12 O 1.21628 * 120.00424 * 3.47252 * 11 10 9 13 13 C 1.47390 * 119.99476 * 183.19759 * 11 10 9 14 14 C 1.39251 * 120.28478 * 355.33118 * 13 11 10 15 15 C 1.38200 * 120.08476 * 179.97438 * 14 13 11 16 16 C 1.38836 * 120.68690 * 0.03762 * 15 14 13 17 17 C 1.37588 * 120.57340 * 0.02562 * 16 15 14 18 18 C 1.40718 * 119.88060 * 359.67712 * 17 16 15 19 19 C 1.40863 * 120.32708 * 180.32137 * 18 17 16 20 20 H 1.08000 * 119.99937 * 215.97407 * 19 18 17 21 21 C 1.40273 * 120.00296 * 35.97476 * 19 18 17 22 22 N 1.30628 * 120.00028 * 355.51048 * 21 19 18 23 23 Si 1.86802 * 120.00200 * 175.51732 * 21 19 18 24 24 H 1.48506 * 109.47024 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47350 * 119.99693 * 23 21 19 26 26 H 1.48490 * 109.47110 * 239.99790 * 23 21 19 27 27 C 1.39614 * 119.94091 * 0.23454 * 9 8 7 28 28 N 1.38979 * 120.21059 * 179.74614 * 27 9 8 29 29 H 1.08997 * 109.47526 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47215 * 300.00026 * 1 2 3 31 31 H 1.09003 * 109.47609 * 60.00077 * 1 2 3 32 32 H 1.08002 * 119.97353 * 0.04769 * 6 5 3 33 33 H 1.07999 * 119.79022 * 180.02562 * 7 6 5 34 34 H 1.08001 * 119.81590 * 179.97438 * 8 7 6 35 35 H 0.97001 * 119.99853 * 154.07726 * 10 9 8 36 36 H 1.07998 * 119.95859 * 359.97111 * 14 13 11 37 37 H 1.08006 * 119.65455 * 180.02562 * 15 14 13 38 38 H 1.07996 * 119.71880 * 179.97438 * 16 15 14 39 39 H 1.08000 * 120.05479 * 179.97438 * 17 16 15 40 40 H 0.97001 * 120.00392 * 180.02562 * 22 21 19 41 41 H 0.97005 * 120.00231 * 5.68729 * 28 27 9 42 42 H 0.97000 * 120.00267 * 185.68928 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4019 2.2200 -0.0005 5 6 3.5347 1.2779 -0.0006 6 6 4.3001 0.1132 -0.1249 7 6 5.6751 0.1882 -0.1246 8 6 6.3110 1.4133 -0.0011 9 6 5.5705 2.5772 0.1230 10 7 6.2203 3.8113 0.2479 11 6 7.4652 3.8684 0.7611 12 8 8.0488 2.8431 1.0569 13 6 8.1219 5.1731 0.9581 14 6 7.5021 6.3434 0.5273 15 6 8.1213 7.5646 0.7146 16 6 9.3631 7.6423 1.3306 17 6 10.0009 6.5035 1.7658 18 6 9.3895 5.2480 1.5930 19 6 10.0310 4.0767 2.0411 20 1 9.9398 3.1611 1.4756 21 6 10.7881 4.0995 3.2217 22 7 10.9712 5.2252 3.8585 23 14 11.5349 2.5201 3.8830 24 1 11.1827 1.3917 2.9841 25 1 13.0119 2.6599 3.9474 26 1 11.0032 2.2531 5.2435 27 6 4.1756 2.5183 0.1289 28 7 3.4271 3.6820 0.2584 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.8121 -0.8454 -0.2215 33 1 6.2617 -0.7135 -0.2212 34 1 7.3900 1.4608 -0.0016 35 1 5.7744 4.6250 -0.0348 36 1 6.5364 6.2965 0.0461 37 1 7.6342 8.4679 0.3781 38 1 9.8330 8.6049 1.4686 39 1 10.9670 6.5737 2.2436 40 1 11.4951 5.2411 4.6748 41 1 3.8694 4.5454 0.2621 42 1 2.4623 3.6311 0.3452 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001448593574.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:54 Heat of formation + Delta-G solvation = -55.286312 kcal Electronic energy + Delta-G solvation = -28560.848135 eV Core-core repulsion = 24471.131212 eV Total energy + Delta-G solvation = -4089.716922 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.84769 -39.88529 -38.33152 -36.91757 -36.50895 -34.76598 -33.96402 -33.46839 -30.88487 -29.95154 -29.56009 -28.09692 -27.68792 -25.55089 -24.06970 -22.98074 -21.60349 -21.32301 -20.80591 -19.51806 -18.43380 -17.52676 -17.22293 -16.97498 -16.78745 -16.41246 -15.93558 -15.49608 -15.27915 -14.48596 -14.44476 -14.30065 -14.01526 -13.71413 -13.56075 -13.52598 -13.13763 -12.79500 -12.75710 -12.49185 -12.30863 -11.92054 -11.71357 -11.51555 -11.21407 -11.10990 -10.99560 -10.72489 -10.63198 -10.59021 -10.43778 -10.13422 -9.97851 -9.81182 -9.39779 -8.45271 -8.24583 -7.72245 -7.43219 -7.13047 -6.83165 -4.51846 0.91092 1.64556 2.22224 2.57420 2.60883 2.73462 3.07489 3.14416 3.21002 3.57428 3.84114 3.93022 3.95040 4.16190 4.61060 4.69998 4.88494 4.96212 5.11032 5.17720 5.28269 5.49319 5.57108 5.61914 5.74428 5.84737 6.02473 6.15004 6.19659 6.28426 6.37432 6.54392 6.67547 6.85251 6.87771 7.01614 7.11252 7.15876 7.38023 7.49608 7.51101 7.64911 7.79849 7.87621 7.91978 8.06587 8.14554 8.59002 8.73734 8.79338 9.14787 10.06821 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014517 B = 0.003084 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.354562 B = 9078.069264 C =10511.638374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.353 6.353 3 C 0.526 3.474 4 O -0.530 6.530 5 C -0.213 4.213 6 C -0.046 4.046 7 C -0.170 4.170 8 C -0.056 4.056 9 C 0.080 3.920 10 N -0.681 5.681 11 C 0.565 3.435 12 O -0.518 6.518 13 C -0.262 4.262 14 C -0.061 4.061 15 C -0.239 4.239 16 C -0.098 4.098 17 C -0.144 4.144 18 C 0.141 3.859 19 C -0.415 4.415 20 H 0.111 0.889 21 C 0.066 3.934 22 N -0.795 5.795 23 Si 0.921 3.079 24 H -0.254 1.254 25 H -0.274 1.274 26 H -0.273 1.273 27 C 0.257 3.743 28 N -0.857 5.857 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.164 0.836 35 H 0.398 0.602 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.131 0.869 40 H 0.282 0.718 41 H 0.392 0.608 42 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.043 -6.620 -6.031 15.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.269 6.269 3 C 0.375 3.625 4 O -0.421 6.421 5 C -0.220 4.220 6 C -0.066 4.066 7 C -0.190 4.190 8 C -0.078 4.078 9 C -0.019 4.019 10 N -0.327 5.327 11 C 0.361 3.639 12 O -0.396 6.396 13 C -0.267 4.267 14 C -0.080 4.080 15 C -0.258 4.258 16 C -0.117 4.117 17 C -0.163 4.163 18 C 0.137 3.863 19 C -0.443 4.443 20 H 0.128 0.872 21 C -0.152 4.152 22 N -0.420 5.420 23 Si 0.745 3.255 24 H -0.177 1.177 25 H -0.199 1.199 26 H -0.199 1.199 27 C 0.145 3.855 28 N -0.406 5.406 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.181 0.819 35 H 0.233 0.767 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.149 0.851 40 H 0.093 0.907 41 H 0.220 0.780 42 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -12.746 -6.950 -5.569 15.549 hybrid contribution -0.517 0.449 0.443 0.816 sum -13.263 -6.501 -5.126 15.635 Atomic orbital electron populations 1.23249 0.76363 1.03595 1.02508 1.86570 1.23203 1.32589 1.84497 1.21054 0.88763 0.81056 0.71601 1.90483 1.66821 1.35616 1.49189 1.18070 0.88234 0.93363 1.22332 1.21050 0.93797 0.96481 0.95245 1.20840 0.93778 0.97838 1.06559 1.21908 1.02889 0.90188 0.92806 1.17280 0.88272 0.87861 1.08536 1.43512 1.17934 1.06586 1.64625 1.18534 0.79137 0.90508 0.75680 1.90570 1.63010 1.35888 1.50150 1.19323 0.98342 0.89991 1.19066 1.20605 0.96735 0.92830 0.97810 1.20321 0.98729 0.95782 1.11003 1.20885 0.95156 0.97386 0.98235 1.21680 1.01053 0.91590 1.01977 1.17522 0.88207 0.93488 0.87087 1.20362 1.20829 0.98113 1.04999 0.87155 1.26206 0.93807 0.98164 0.97072 1.69690 1.30194 1.27175 1.14981 0.86021 0.78335 0.81795 0.79309 1.17725 1.19943 1.19867 1.17452 0.89214 0.86505 0.92359 1.43167 1.11871 1.04997 1.80517 0.88119 0.91939 0.91934 0.85144 0.85442 0.81897 0.76655 0.89463 0.88978 0.88928 0.85137 0.90714 0.77986 0.74419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.57 101.05 1.07 1.36 16 2 O -0.35 -4.05 9.83 -40.66 -0.40 -4.45 16 3 C 0.53 7.17 7.87 34.41 0.27 7.44 16 4 O -0.53 -7.70 13.45 -19.29 -0.26 -7.96 16 5 C -0.21 -3.05 5.89 -104.84 -0.62 -3.66 16 6 C -0.05 -0.60 9.61 -39.15 -0.38 -0.97 16 7 C -0.17 -2.34 10.01 -39.65 -0.40 -2.74 16 8 C -0.06 -0.94 8.77 -39.35 -0.35 -1.29 16 9 C 0.08 1.34 6.46 -83.50 -0.54 0.80 16 10 N -0.68 -11.87 5.16 -10.72 -0.06 -11.92 16 11 C 0.56 12.29 7.60 -12.54 -0.10 12.20 16 12 O -0.52 -12.41 10.47 5.25 0.05 -12.35 16 13 C -0.26 -6.06 5.92 -104.37 -0.62 -6.67 16 14 C -0.06 -1.23 9.53 -39.22 -0.37 -1.60 16 15 C -0.24 -4.84 10.03 -39.37 -0.39 -5.24 16 16 C -0.10 -2.12 10.01 -39.60 -0.40 -2.51 16 17 C -0.14 -3.52 8.65 -38.88 -0.34 -3.85 16 18 C 0.14 3.62 5.56 -106.54 -0.59 3.03 16 19 C -0.41 -10.86 7.78 -37.82 -0.29 -11.16 16 20 H 0.11 2.96 5.72 -52.49 -0.30 2.66 16 21 C 0.07 1.62 5.42 -17.30 -0.09 1.53 16 22 N -0.79 -19.81 10.68 55.56 0.59 -19.22 16 23 Si 0.92 19.15 29.56 -169.99 -5.03 14.12 16 24 H -0.25 -5.37 7.11 56.52 0.40 -4.97 16 25 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 26 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 27 C 0.26 3.90 6.78 -83.36 -0.57 3.33 16 28 N -0.86 -11.41 8.87 32.67 0.29 -11.12 16 29 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.13 1.38 7.62 -52.49 -0.40 0.98 16 33 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 34 H 0.16 3.05 5.53 -52.49 -0.29 2.76 16 35 H 0.40 5.88 5.37 -40.82 -0.22 5.66 16 36 H 0.09 1.42 6.41 -52.49 -0.34 1.08 16 37 H 0.09 1.61 8.06 -52.48 -0.42 1.19 16 38 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 39 H 0.13 3.29 6.24 -52.49 -0.33 2.96 16 40 H 0.28 6.39 8.29 -40.82 -0.34 6.05 16 41 H 0.39 4.58 7.24 -40.82 -0.30 4.29 16 42 H 0.41 5.56 5.42 -40.86 -0.22 5.34 16 LS Contribution 352.26 15.07 5.31 5.31 Total: -1.00 -29.09 352.26 -8.25 -37.34 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: -4.06 Total: 20.27 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -4.70 Total: -10.01 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: 0.83 Total: -42.26 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.60 Total: -24.76 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.09 -8.25 -37.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001448593574.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.946 kcal (2) G-P(sol) polarization free energy of solvation -29.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds