Wall clock time and date at job start Sat Apr 11 2020 05:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34763 * 116.99885 * 2 1 4 4 O 1.21526 * 120.00045 * 359.97438 * 3 2 1 5 5 C 1.47295 * 119.99913 * 180.02562 * 3 2 1 6 6 C 1.39913 * 120.18234 * 5.87342 * 5 3 2 7 7 C 1.37705 * 120.05898 * 180.02562 * 6 5 3 8 8 C 1.38587 * 120.42034 * 0.02562 * 7 6 5 9 9 C 1.38504 * 120.36280 * 359.97438 * 8 7 6 10 10 N 1.40030 * 120.03001 * 179.97438 * 9 8 7 11 11 C 1.34776 * 119.99548 * 334.07688 * 10 9 8 12 12 O 1.21628 * 120.00424 * 3.47252 * 11 10 9 13 13 C 1.47390 * 119.99476 * 183.19759 * 11 10 9 14 14 C 1.39251 * 120.28478 * 355.33118 * 13 11 10 15 15 C 1.38200 * 120.08476 * 179.97438 * 14 13 11 16 16 C 1.38836 * 120.68690 * 0.03762 * 15 14 13 17 17 C 1.37588 * 120.57340 * 0.02562 * 16 15 14 18 18 C 1.40718 * 119.88060 * 359.67712 * 17 16 15 19 19 C 1.40863 * 120.32708 * 180.32137 * 18 17 16 20 20 H 1.08000 * 119.99937 * 215.97407 * 19 18 17 21 21 C 1.40273 * 120.00296 * 35.97476 * 19 18 17 22 22 N 1.30628 * 120.00028 * 355.51048 * 21 19 18 23 23 Si 1.86802 * 120.00200 * 175.51732 * 21 19 18 24 24 H 1.48506 * 109.47024 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47350 * 119.99693 * 23 21 19 26 26 H 1.48490 * 109.47110 * 239.99790 * 23 21 19 27 27 C 1.39614 * 119.94091 * 0.23454 * 9 8 7 28 28 N 1.38979 * 120.21059 * 179.74614 * 27 9 8 29 29 H 1.08997 * 109.47526 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47215 * 300.00026 * 1 2 3 31 31 H 1.09003 * 109.47609 * 60.00077 * 1 2 3 32 32 H 1.08002 * 119.97353 * 0.04769 * 6 5 3 33 33 H 1.07999 * 119.79022 * 180.02562 * 7 6 5 34 34 H 1.08001 * 119.81590 * 179.97438 * 8 7 6 35 35 H 0.97001 * 119.99853 * 154.07726 * 10 9 8 36 36 H 1.07998 * 119.95859 * 359.97111 * 14 13 11 37 37 H 1.08006 * 119.65455 * 180.02562 * 15 14 13 38 38 H 1.07996 * 119.71880 * 179.97438 * 16 15 14 39 39 H 1.08000 * 120.05479 * 179.97438 * 17 16 15 40 40 H 0.97001 * 120.00392 * 180.02562 * 22 21 19 41 41 H 0.97005 * 120.00231 * 5.68729 * 28 27 9 42 42 H 0.97000 * 120.00267 * 185.68928 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4019 2.2200 -0.0005 5 6 3.5347 1.2779 -0.0006 6 6 4.3001 0.1132 -0.1249 7 6 5.6751 0.1882 -0.1246 8 6 6.3110 1.4133 -0.0011 9 6 5.5705 2.5772 0.1230 10 7 6.2203 3.8113 0.2479 11 6 7.4652 3.8684 0.7611 12 8 8.0488 2.8431 1.0569 13 6 8.1219 5.1731 0.9581 14 6 7.5021 6.3434 0.5273 15 6 8.1213 7.5646 0.7146 16 6 9.3631 7.6423 1.3306 17 6 10.0009 6.5035 1.7658 18 6 9.3895 5.2480 1.5930 19 6 10.0310 4.0767 2.0411 20 1 9.9398 3.1611 1.4756 21 6 10.7881 4.0995 3.2217 22 7 10.9712 5.2252 3.8585 23 14 11.5349 2.5201 3.8830 24 1 11.1827 1.3917 2.9841 25 1 13.0119 2.6599 3.9474 26 1 11.0032 2.2531 5.2435 27 6 4.1756 2.5183 0.1289 28 7 3.4271 3.6820 0.2584 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.8121 -0.8454 -0.2215 33 1 6.2617 -0.7135 -0.2212 34 1 7.3900 1.4608 -0.0016 35 1 5.7744 4.6250 -0.0348 36 1 6.5364 6.2965 0.0461 37 1 7.6342 8.4679 0.3781 38 1 9.8330 8.6049 1.4686 39 1 10.9670 6.5737 2.2436 40 1 11.4951 5.2411 4.6748 41 1 3.8694 4.5454 0.2621 42 1 2.4623 3.6311 0.3452 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001448593574.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:53 Heat of formation + Delta-G solvation = -71.978073 kcal Electronic energy + Delta-G solvation = -28561.571944 eV Core-core repulsion = 24471.131212 eV Total energy + Delta-G solvation = -4090.440731 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.98044 -41.20617 -39.72972 -38.48575 -37.56095 -36.10942 -35.54628 -34.92015 -32.32080 -31.62155 -31.02197 -29.36428 -28.44282 -27.32720 -25.26021 -24.45762 -23.06889 -22.51943 -22.32558 -21.01281 -19.83196 -19.05624 -18.47256 -18.14487 -17.88689 -17.36767 -17.27817 -17.04573 -16.73091 -15.99623 -15.90596 -15.81213 -15.28646 -15.04418 -14.75163 -14.64774 -14.52136 -14.48878 -14.07695 -13.90587 -13.46212 -13.23530 -12.98747 -12.92454 -12.79934 -12.61599 -12.45575 -12.26005 -11.84213 -11.82048 -11.71602 -11.57884 -11.56346 -11.33436 -11.16584 -10.11535 -9.57438 -9.40142 -9.21096 -8.62998 -8.33633 -6.40193 -0.23337 0.33188 0.64849 1.01447 1.35603 1.47187 1.49131 1.53635 1.65794 2.19539 2.22499 2.30058 2.76486 2.81788 2.92806 3.68026 3.69973 4.01576 4.06244 4.18248 4.30432 4.32610 4.36835 4.48788 4.55518 4.59532 4.67369 4.78510 4.87609 5.06791 5.11544 5.22092 5.25938 5.27196 5.35971 5.51569 5.60891 5.65382 5.80286 5.92479 6.08150 6.11219 6.31551 6.34979 6.55810 6.65110 6.75165 6.87063 6.90843 6.97020 7.51193 8.29319 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014517 B = 0.003084 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.354562 B = 9078.069264 C =10511.638374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.527 3.473 4 O -0.542 6.542 5 C -0.222 4.222 6 C -0.027 4.027 7 C -0.170 4.170 8 C -0.072 4.072 9 C 0.052 3.948 10 N -0.663 5.663 11 C 0.561 3.439 12 O -0.548 6.548 13 C -0.276 4.276 14 C -0.058 4.058 15 C -0.232 4.232 16 C -0.095 4.095 17 C -0.175 4.175 18 C 0.111 3.889 19 C -0.453 4.453 20 H 0.091 0.909 21 C 0.028 3.972 22 N -0.824 5.824 23 Si 0.981 3.019 24 H -0.266 1.266 25 H -0.257 1.257 26 H -0.269 1.269 27 C 0.256 3.744 28 N -0.850 5.850 29 H 0.134 0.866 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.162 0.838 33 H 0.151 0.849 34 H 0.137 0.863 35 H 0.410 0.590 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.119 0.881 39 H 0.112 0.888 40 H 0.288 0.712 41 H 0.399 0.601 42 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.832 -7.004 -6.830 18.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.268 6.268 3 C 0.376 3.624 4 O -0.435 6.435 5 C -0.230 4.230 6 C -0.047 4.047 7 C -0.191 4.191 8 C -0.093 4.093 9 C -0.046 4.046 10 N -0.310 5.310 11 C 0.356 3.644 12 O -0.428 6.428 13 C -0.281 4.281 14 C -0.077 4.077 15 C -0.251 4.251 16 C -0.113 4.113 17 C -0.195 4.195 18 C 0.107 3.893 19 C -0.482 4.482 20 H 0.109 0.891 21 C -0.186 4.186 22 N -0.451 5.451 23 Si 0.802 3.198 24 H -0.190 1.190 25 H -0.182 1.182 26 H -0.194 1.194 27 C 0.143 3.857 28 N -0.398 5.398 29 H 0.152 0.848 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.179 0.821 33 H 0.169 0.831 34 H 0.154 0.846 35 H 0.248 0.752 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.137 0.863 39 H 0.130 0.870 40 H 0.099 0.901 41 H 0.228 0.772 42 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -15.578 -7.313 -6.389 18.356 hybrid contribution 0.075 0.584 0.540 0.799 sum -15.503 -6.729 -5.849 17.883 Atomic orbital electron populations 1.23597 0.74235 1.05904 1.02661 1.86548 1.25206 1.31168 1.83897 1.20909 0.88447 0.81581 0.71419 1.90474 1.67029 1.36203 1.49787 1.18332 0.89195 0.93442 1.22011 1.21373 0.93235 0.97367 0.92692 1.21048 0.94506 0.97459 1.06052 1.21829 1.01841 0.91745 0.93933 1.17355 0.89055 0.87342 1.10844 1.43106 1.16554 1.07721 1.63573 1.18485 0.80316 0.89777 0.75795 1.90569 1.64157 1.36629 1.51402 1.19690 0.98034 0.91893 1.18483 1.21048 0.98199 0.91709 0.96745 1.20819 0.97850 0.97319 1.09094 1.21244 0.95708 0.97523 0.96842 1.21601 1.01154 0.92514 1.04210 1.17888 0.89470 0.93919 0.88023 1.20317 1.23541 0.97860 1.06528 0.89140 1.26853 0.93994 1.00900 0.96848 1.69732 1.31348 1.28360 1.15627 0.85164 0.78419 0.77935 0.78270 1.19018 1.18168 1.19382 1.17459 0.88523 0.87533 0.92161 1.43138 1.11833 1.04913 1.79961 0.84803 0.91946 0.91670 0.82078 0.83131 0.84586 0.75186 0.85102 0.84964 0.86318 0.86976 0.90145 0.77160 0.74230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.57 113.37 1.20 1.57 16 2 O -0.35 -7.01 9.83 -56.74 -0.56 -7.57 16 3 C 0.53 13.10 7.87 70.20 0.55 13.66 16 4 O -0.54 -14.64 13.45 19.75 0.27 -14.37 16 5 C -0.22 -5.92 5.89 -20.01 -0.12 -6.03 16 6 C -0.03 -0.64 9.61 22.55 0.22 -0.42 16 7 C -0.17 -4.47 10.01 22.23 0.22 -4.25 16 8 C -0.07 -2.44 8.77 22.42 0.20 -2.24 16 9 C 0.05 1.74 6.46 38.23 0.25 1.99 16 10 N -0.66 -22.97 5.16 -306.06 -1.58 -24.55 16 11 C 0.56 25.09 7.60 86.65 0.66 25.75 16 12 O -0.55 -27.71 10.47 -4.12 -0.04 -27.75 16 13 C -0.28 -12.94 5.92 -19.70 -0.12 -13.06 16 14 C -0.06 -2.24 9.53 22.50 0.21 -2.02 16 15 C -0.23 -8.73 10.03 22.40 0.22 -8.50 16 16 C -0.09 -4.00 10.01 22.26 0.22 -3.78 16 17 C -0.18 -8.86 8.65 22.72 0.20 -8.67 16 18 C 0.11 5.93 5.56 -21.11 -0.12 5.81 16 19 C -0.45 -25.28 7.78 23.41 0.18 -25.10 16 20 H 0.09 5.25 5.72 -2.91 -0.02 5.24 16 21 C 0.03 1.48 5.42 85.37 0.46 1.94 16 22 N -0.82 -43.03 10.68 21.88 0.23 -42.79 16 23 Si 0.98 41.14 29.56 68.60 2.03 43.17 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 26 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 27 C 0.26 7.44 6.78 38.82 0.26 7.70 16 28 N -0.85 -21.18 8.87 -50.56 -0.45 -21.63 16 29 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.16 2.77 7.62 -2.91 -0.02 2.75 16 33 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 34 H 0.14 5.40 5.53 -2.91 -0.02 5.39 16 35 H 0.41 11.50 5.37 -92.71 -0.50 11.00 16 36 H 0.13 3.77 6.41 -2.91 -0.02 3.75 16 37 H 0.13 3.96 8.06 -2.91 -0.02 3.93 16 38 H 0.12 4.31 8.06 -2.91 -0.02 4.28 16 39 H 0.11 5.98 6.24 -2.91 -0.02 5.96 16 40 H 0.29 13.59 8.29 -92.71 -0.77 12.82 16 41 H 0.40 8.55 7.24 -92.70 -0.67 7.88 16 42 H 0.42 10.40 5.42 -93.41 -0.51 9.89 16 Total: -1.00 -67.06 352.26 4.06 -63.00 By element: Atomic # 1 Polarization: 48.69 SS G_CDS: -0.54 Total: 48.15 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: 4.71 Total: -15.66 kcal Atomic # 7 Polarization: -87.18 SS G_CDS: -1.79 Total: -88.97 kcal Atomic # 8 Polarization: -49.36 SS G_CDS: -0.34 Total: -49.69 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -67.06 4.06 -63.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001448593574.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.982 kcal (2) G-P(sol) polarization free energy of solvation -67.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds