Wall clock time and date at job start Sat Apr 11 2020 05:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31345 * 1 3 3 Si 1.86797 * 120.00212 * 2 1 4 4 H 1.48504 * 109.47017 * 93.80964 * 3 2 1 5 5 H 1.48503 * 109.47304 * 213.80823 * 3 2 1 6 6 H 1.48501 * 109.47288 * 333.80862 * 3 2 1 7 7 C 1.39018 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99812 * 6.78898 * 7 2 1 9 9 N 1.36885 * 119.99800 * 186.79289 * 7 2 1 10 10 C 1.38211 * 125.62113 * 231.25893 * 9 7 2 11 11 C 1.46890 * 125.43429 * 359.97438 * 10 9 7 12 12 O 1.21666 * 120.00541 * 185.85813 * 11 10 9 13 13 N 1.34786 * 119.99980 * 5.86566 * 11 10 9 14 14 C 1.46502 * 119.99960 * 184.42771 * 13 11 10 15 15 H 1.09001 * 109.47020 * 39.03865 * 14 13 11 16 16 C 1.52999 * 109.46842 * 279.04673 * 14 13 11 17 17 O 1.42902 * 109.46705 * 294.30345 * 16 14 13 18 18 C 1.50695 * 109.47139 * 159.04167 * 14 13 11 19 19 N 1.30503 * 125.64933 * 68.41875 * 18 14 13 20 20 C 1.34120 * 109.25659 * 179.97438 * 19 18 14 21 21 C 1.34663 * 108.02475 * 0.02562 * 20 19 18 22 22 N 1.35045 * 125.65347 * 248.11580 * 18 14 13 23 23 H 0.97001 * 126.39011 * 359.97438 * 22 18 14 24 24 C 1.36116 * 109.12801 * 179.82704 * 10 9 7 25 25 C 1.41695 * 107.75252 * 0.43353 * 24 10 9 26 26 C 1.40018 * 133.35830 * 179.77531 * 25 24 10 27 27 C 1.36570 * 119.83776 * 179.97438 * 26 25 24 28 28 C 1.38856 * 120.59663 * 359.96792 * 27 26 25 29 29 C 1.37844 * 120.63568 * 0.02562 * 28 27 26 30 30 C 1.37841 * 125.62335 * 51.57318 * 9 7 2 31 31 H 0.96999 * 120.00052 * 354.99803 * 1 2 3 32 32 H 0.96999 * 119.99909 * 4.41809 * 13 11 10 33 33 H 1.08997 * 109.47319 * 54.30190 * 16 14 13 34 34 H 1.08995 * 109.47084 * 174.31273 * 16 14 13 35 35 H 0.96705 * 114.00225 * 180.02562 * 17 16 14 36 36 H 1.08000 * 125.98896 * 180.02562 * 20 19 18 37 37 H 1.08000 * 126.59687 * 179.97438 * 21 20 19 38 38 H 1.08006 * 126.12263 * 180.16527 * 24 10 9 39 39 H 1.08001 * 120.07901 * 0.02562 * 26 25 24 40 40 H 1.08000 * 119.70415 * 179.97438 * 27 26 25 41 41 H 1.08005 * 119.68445 * 180.02562 * 28 27 26 42 42 H 1.07997 * 120.09688 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 2.5756 1.9998 1.3970 5 1 3.5025 1.4647 -0.7790 6 1 1.4071 2.6746 -0.6179 7 6 2.0085 -1.2039 -0.0005 8 1 1.4742 -2.1359 -0.1115 9 7 3.3702 -1.2082 0.1397 10 6 4.2628 -1.8603 -0.6899 11 6 3.9021 -2.6626 -1.8663 12 8 4.7600 -3.2822 -2.4665 13 7 2.6205 -2.7122 -2.2809 14 6 2.2441 -3.5877 -3.3936 15 1 2.7922 -4.5269 -3.3185 16 6 2.5847 -2.9031 -4.7188 17 8 1.7689 -1.7408 -4.8780 18 6 0.7638 -3.8640 -3.3368 19 7 -0.1818 -2.9910 -3.5534 20 6 -1.3749 -3.5884 -3.4178 21 6 -1.1608 -4.8805 -3.1049 22 7 0.1958 -5.0573 -3.0589 23 1 0.6622 -5.8847 -2.8619 24 6 5.5297 -1.6377 -0.2447 25 6 5.4444 -0.8249 0.9128 26 6 6.4008 -0.2889 1.7837 27 6 6.0027 0.4780 2.8413 28 6 4.6557 0.7330 3.0621 29 6 3.6956 0.2165 2.2186 30 6 4.0768 -0.5678 1.1350 31 1 -0.4850 0.8368 0.0732 32 1 1.9475 -2.1685 -1.8425 33 1 3.6352 -2.6124 -4.7181 34 1 2.3991 -3.5927 -5.5422 35 1 1.9309 -1.2558 -5.6988 36 1 -2.3386 -3.1159 -3.5386 37 1 -1.9144 -5.6336 -2.9283 38 1 6.4372 -2.0166 -0.6912 39 1 7.4508 -0.4808 1.6190 40 1 6.7422 0.8900 3.5120 41 1 4.3574 1.3418 3.9028 42 1 2.6504 0.4200 2.3987 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001456370498.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:56 Heat of formation + Delta-G solvation = 29.259684 kcal Electronic energy + Delta-G solvation = -29926.334350 eV Core-core repulsion = 25872.576368 eV Total energy + Delta-G solvation = -4053.757982 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.01682 -42.47522 -40.42358 -37.98294 -37.72966 -35.80524 -35.19372 -33.42652 -33.14652 -31.93983 -30.75501 -29.86086 -28.77379 -26.73107 -25.36178 -23.94674 -22.78222 -22.52989 -22.01269 -21.10144 -20.96330 -20.27284 -19.20156 -18.36839 -18.02038 -17.61686 -17.15974 -16.72005 -16.46069 -16.06981 -15.92709 -15.71238 -15.36909 -15.09463 -14.97691 -14.79723 -14.76688 -14.64532 -14.45140 -14.20168 -13.87210 -13.64859 -13.48118 -13.23775 -12.68434 -12.57895 -12.47647 -12.32203 -11.92869 -11.60304 -11.35209 -11.24341 -10.95448 -10.88698 -10.73300 -10.40884 -10.16200 -9.39855 -9.03055 -8.79665 -8.56514 -6.68979 -0.05097 0.89633 0.99214 1.12238 1.17591 1.29259 1.34383 1.96136 2.01620 2.19746 2.34701 2.40576 2.53993 2.78264 3.13567 3.29726 3.38693 3.85755 3.92936 4.02606 4.26519 4.29309 4.35371 4.37890 4.45199 4.50110 4.58519 4.59696 4.66906 4.74587 4.81294 5.02077 5.11243 5.14680 5.25671 5.37865 5.40435 5.67750 5.72801 5.80449 5.83857 5.98058 6.05814 6.40332 6.44791 6.54185 6.75900 6.97340 7.13996 7.21217 7.25168 8.27166 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013817 B = 0.004490 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.010653 B = 6233.897235 C = 7186.618295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.065 3.935 3 Si 0.916 3.084 4 H -0.216 1.216 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.302 5.302 10 C -0.036 4.036 11 C 0.593 3.407 12 O -0.569 6.569 13 N -0.707 5.707 14 C 0.229 3.771 15 H 0.119 0.881 16 C 0.079 3.921 17 O -0.561 6.561 18 C 0.172 3.828 19 N -0.472 5.472 20 C -0.071 4.071 21 C -0.025 4.025 22 N -0.553 5.553 23 H 0.432 0.568 24 C -0.152 4.152 25 C -0.144 4.144 26 C -0.073 4.073 27 C -0.151 4.151 28 C -0.109 4.109 29 C -0.143 4.143 30 C 0.047 3.953 31 H 0.291 0.709 32 H 0.419 0.581 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.384 0.616 36 H 0.176 0.824 37 H 0.222 0.778 38 H 0.159 0.841 39 H 0.147 0.853 40 H 0.157 0.843 41 H 0.148 0.852 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.909 -5.988 -3.117 7.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.148 4.148 3 Si 0.739 3.261 4 H -0.139 1.139 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.499 4.499 8 H 0.107 0.893 9 N 0.031 4.969 10 C -0.149 4.149 11 C 0.382 3.618 12 O -0.450 6.450 13 N -0.364 5.364 14 C 0.123 3.877 15 H 0.137 0.863 16 C -0.001 4.001 17 O -0.367 6.367 18 C -0.092 4.092 19 N -0.192 5.192 20 C -0.219 4.219 21 C -0.160 4.160 22 N -0.158 5.158 23 H 0.273 0.727 24 C -0.179 4.179 25 C -0.149 4.149 26 C -0.092 4.092 27 C -0.170 4.170 28 C -0.128 4.128 29 C -0.163 4.163 30 C -0.065 4.065 31 H 0.102 0.898 32 H 0.264 0.736 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.232 0.768 36 H 0.194 0.806 37 H 0.238 0.762 38 H 0.176 0.824 39 H 0.165 0.835 40 H 0.175 0.825 41 H 0.165 0.835 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.670 -5.712 -3.328 7.129 hybrid contribution -0.532 -0.145 -0.291 0.623 sum 2.138 -5.857 -3.619 7.209 Atomic orbital electron populations 1.69621 1.07133 1.30570 1.41492 1.25896 0.95733 1.01135 0.91997 0.86348 0.78293 0.79502 0.81912 1.13938 1.20825 1.20766 1.18780 0.78826 0.95264 1.57048 0.89309 1.40237 1.04541 1.35354 1.16805 1.20653 0.90937 1.06901 0.96378 1.17217 0.82450 0.79833 0.82346 1.90678 1.49478 1.46999 1.57879 1.46765 1.10234 1.44744 1.34678 1.19344 0.86278 0.94835 0.87256 0.86296 1.22383 0.93823 0.88688 0.95204 1.86807 1.63340 1.40747 1.45807 1.22716 0.95667 0.83014 1.07807 1.70321 0.99218 1.31961 1.17674 1.22860 0.97149 0.93071 1.08836 1.23362 0.84723 1.00222 1.07728 1.43269 1.07489 1.11741 1.53257 0.72722 1.20819 0.95263 1.03691 0.98171 1.18428 0.92671 1.04466 0.99331 1.20654 0.98719 0.96400 0.93403 1.20903 0.95783 1.01175 0.99149 1.21142 0.92899 0.99892 0.98903 1.20345 1.00078 1.00626 0.95275 1.19030 0.92140 1.02183 0.93158 0.89841 0.73605 0.93146 0.90507 0.76821 0.80641 0.76178 0.82364 0.83511 0.82499 0.83451 0.87625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.26 13.95 21.67 0.30 -46.96 16 2 C 0.06 3.46 5.28 84.95 0.45 3.91 16 3 Si 0.92 43.60 24.32 68.60 1.67 45.27 16 4 H -0.22 -9.29 5.32 99.48 0.53 -8.76 16 5 H -0.28 -14.64 7.11 99.48 0.71 -13.93 16 6 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 7 C -0.37 -20.13 7.75 84.09 0.65 -19.48 16 8 H 0.09 5.19 7.16 -2.91 -0.02 5.17 16 9 N -0.30 -15.30 2.32 -331.34 -0.77 -16.07 16 10 C -0.04 -1.72 6.77 39.91 0.27 -1.45 16 11 C 0.59 26.99 7.63 86.51 0.66 27.65 16 12 O -0.57 -25.47 16.16 -4.24 -0.07 -25.54 16 13 N -0.71 -30.62 4.93 -449.87 -2.22 -32.84 16 14 C 0.23 7.94 2.85 44.24 0.13 8.07 16 15 H 0.12 3.56 7.77 -2.39 -0.02 3.55 16 16 C 0.08 2.46 6.78 71.98 0.49 2.95 16 17 O -0.56 -19.64 12.06 -148.98 -1.80 -21.44 16 18 C 0.17 5.88 6.86 138.13 0.95 6.83 16 19 N -0.47 -18.63 9.86 -188.14 -1.86 -20.49 16 20 C -0.07 -2.27 11.87 83.52 0.99 -1.28 16 21 C -0.03 -0.60 12.04 83.08 1.00 0.40 16 22 N -0.55 -13.95 6.15 -186.27 -1.15 -15.09 16 23 H 0.43 7.62 8.96 -92.71 -0.83 6.79 16 24 C -0.15 -6.59 10.55 22.63 0.24 -6.35 16 25 C -0.14 -6.09 6.16 -21.34 -0.13 -6.22 16 26 C -0.07 -2.42 10.06 22.31 0.22 -2.19 16 27 C -0.15 -4.45 9.97 22.03 0.22 -4.23 16 28 C -0.11 -3.62 10.02 22.32 0.22 -3.39 16 29 C -0.14 -6.08 6.78 22.38 0.15 -5.93 16 30 C 0.05 2.23 5.06 39.06 0.20 2.43 16 31 H 0.29 14.89 8.31 -92.71 -0.77 14.12 16 32 H 0.42 20.81 4.77 -92.71 -0.44 20.37 16 33 H 0.05 1.64 7.63 -2.39 -0.02 1.63 16 34 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.38 9.57 9.12 -74.05 -0.68 8.90 16 36 H 0.18 4.96 8.06 -2.91 -0.02 4.93 16 37 H 0.22 3.00 8.06 -2.91 -0.02 2.97 16 38 H 0.16 6.03 8.06 -2.91 -0.02 6.00 16 39 H 0.15 3.78 8.06 -2.91 -0.02 3.75 16 40 H 0.16 3.23 8.06 -2.91 -0.02 3.20 16 41 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 42 H 0.11 4.69 6.22 -2.91 -0.02 4.67 16 Total: -1.00 -74.58 352.14 -0.19 -74.76 By element: Atomic # 1 Polarization: 57.69 SS G_CDS: -1.01 Total: 56.67 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 6.71 Total: 1.71 kcal Atomic # 7 Polarization: -125.75 SS G_CDS: -5.69 Total: -131.44 kcal Atomic # 8 Polarization: -45.12 SS G_CDS: -1.86 Total: -46.98 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.67 Total: 45.27 kcal Total: -74.58 -0.19 -74.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001456370498.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.023 kcal (2) G-P(sol) polarization free energy of solvation -74.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds