Wall clock time and date at job start Sat Apr 11 2020 05:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21322 * 120.00203 * 2 1 4 4 C 1.46600 * 119.99856 * 179.97438 * 2 1 3 5 5 C 1.38549 * 120.90255 * 0.23540 * 4 2 1 6 6 N 1.34140 * 120.31097 * 180.24431 * 5 4 2 7 7 H 0.96996 * 118.80771 * 179.75894 * 6 5 4 8 8 C 1.35454 * 122.38353 * 359.77456 * 6 5 4 9 9 C 1.35135 * 121.84809 * 359.97438 * 8 6 5 10 10 C 1.41317 * 119.39715 * 359.97438 * 9 8 6 11 11 N 1.34126 * 121.07101 * 179.97438 * 10 9 8 12 12 C 1.32555 * 119.99946 * 355.17374 * 11 10 9 13 13 O 1.21670 * 119.99605 * 64.72126 * 12 11 10 14 14 C 1.50690 * 120.00197 * 244.72595 * 12 11 10 15 15 C 1.50709 * 109.47274 * 180.02562 * 14 12 11 16 16 C 1.38328 * 119.96129 * 269.72681 * 15 14 12 17 17 C 1.38281 * 120.13120 * 179.76741 * 16 15 14 18 18 C 1.38117 * 120.07255 * 0.50242 * 17 16 15 19 19 C 1.38859 * 119.93097 * 359.74992 * 18 17 16 20 20 O 1.35751 * 120.07246 * 179.97438 * 19 18 17 21 21 C 1.34831 * 116.99675 * 354.54474 * 20 19 18 22 22 H 1.08007 * 120.00058 * 5.04855 * 21 20 19 23 23 C 1.38650 * 120.00128 * 185.05174 * 21 20 19 24 24 N 1.31558 * 119.99967 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00449 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46805 * 59.99664 * 25 23 21 27 27 H 1.48500 * 109.47392 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.46916 * 300.00226 * 25 23 21 29 29 C 1.38077 * 119.96691 * 89.99604 * 15 14 12 30 30 H 1.09002 * 109.47465 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47433 * 300.00786 * 1 2 3 32 32 H 1.09007 * 109.46990 * 60.00821 * 1 2 3 33 33 H 1.08000 * 119.84609 * 359.97423 * 5 4 2 34 34 H 1.08000 * 119.07463 * 179.97438 * 8 6 5 35 35 H 1.08003 * 120.30108 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.47461 * 60.00270 * 14 12 11 37 37 H 1.09000 * 109.47424 * 300.00033 * 14 12 11 38 38 H 1.07992 * 119.93110 * 359.97438 * 16 15 14 39 39 H 1.08004 * 119.95782 * 180.25674 * 17 16 15 40 40 H 1.08002 * 120.03602 * 179.77599 * 18 17 16 41 41 H 0.97003 * 120.00326 * 180.02562 * 24 23 21 42 42 H 1.08002 * 120.03309 * 359.96234 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1136 1.0507 0.0000 4 6 2.2399 -1.2696 0.0006 5 6 1.5661 -2.4802 -0.0038 6 7 2.2487 -3.6349 0.0017 7 1 1.7549 -4.4698 0.0021 8 6 3.6026 -3.6773 0.0071 9 6 4.3513 -2.5523 0.0067 10 6 3.7106 -1.2928 0.0000 11 7 4.4207 -0.1549 0.0000 12 6 5.7416 -0.1980 0.1028 13 8 6.4039 -0.7123 -0.7788 14 6 6.4228 0.3898 1.3116 15 6 7.9140 0.2130 1.1835 16 6 8.5208 -0.9232 1.6879 17 6 9.8881 -1.0913 1.5680 18 6 10.6535 -0.1198 0.9533 19 6 10.0480 1.0242 0.4506 20 8 10.7977 1.9811 -0.1537 21 6 12.1355 1.8141 -0.1336 22 1 12.5607 0.9097 0.2762 23 6 12.9654 2.8032 -0.6387 24 7 12.4475 3.9051 -1.1373 25 14 14.8188 2.5722 -0.6102 26 1 15.1793 1.3652 -1.3967 27 1 15.4755 3.7646 -1.2035 28 1 15.2750 2.4031 0.7928 29 6 8.6737 1.1878 0.5679 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 0.4862 -2.4943 -0.0072 34 1 4.0976 -4.6372 0.0118 35 1 5.4295 -2.6153 0.0107 36 1 6.0721 -0.1189 2.2096 37 1 6.1879 1.4519 1.3805 38 1 7.9250 -1.6820 2.1732 39 1 10.3584 -1.9814 1.9591 40 1 11.7219 -0.2501 0.8632 41 1 13.0280 4.5970 -1.4911 42 1 8.1998 2.0764 0.1777 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001459188359.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:01 Heat of formation + Delta-G solvation = -38.749368 kcal Electronic energy + Delta-G solvation = -27627.016529 eV Core-core repulsion = 23538.016702 eV Total energy + Delta-G solvation = -4088.999827 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.87089 -41.01813 -40.24373 -39.61384 -38.26585 -35.96290 -34.37872 -33.55316 -33.48386 -32.04574 -30.95132 -30.11901 -28.55367 -27.29612 -25.49015 -24.85240 -23.31048 -22.62437 -21.61119 -20.79460 -19.53964 -19.43395 -18.79548 -18.15990 -17.70308 -16.86532 -16.74129 -16.59904 -16.37101 -16.12661 -15.96813 -15.89741 -15.58677 -15.49730 -15.11297 -15.04555 -14.90382 -14.32324 -14.20517 -14.01067 -13.60631 -13.18025 -13.03524 -12.91329 -12.84950 -12.73416 -12.57302 -12.43263 -12.30547 -12.24504 -12.14737 -11.50720 -11.25156 -10.82963 -10.67996 -10.63457 -9.98373 -9.70066 -9.05471 -8.67331 -8.49031 -6.19321 -0.23582 -0.02263 0.48243 0.69471 1.26088 1.31261 1.44442 1.49910 1.66643 1.90540 2.16338 2.56901 2.77368 3.06018 3.19682 3.30932 3.40019 3.64045 3.79542 3.89941 3.93875 4.03265 4.12253 4.22926 4.32683 4.41128 4.49626 4.51362 4.54565 4.66289 4.75039 4.81226 4.87850 4.98892 5.05716 5.08296 5.22375 5.40816 5.55023 5.58761 5.64935 5.66600 5.69947 5.99218 6.17845 6.22112 6.64396 6.93837 7.00557 7.35241 7.75874 8.74953 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021625 B = 0.002184 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.471231 B =12815.439252 C =13616.238559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.385 3.615 3 O -0.502 6.502 4 C -0.306 4.306 5 C 0.245 3.755 6 N -0.543 5.543 7 H 0.459 0.541 8 C 0.182 3.818 9 C -0.286 4.286 10 C 0.303 3.697 11 N -0.660 5.660 12 C 0.501 3.499 13 O -0.568 6.568 14 C -0.093 4.093 15 C -0.025 4.025 16 C -0.181 4.181 17 C -0.064 4.064 18 C -0.244 4.244 19 C 0.116 3.884 20 O -0.237 6.237 21 C -0.418 4.418 22 H 0.105 0.895 23 C -0.029 4.029 24 N -0.926 5.926 25 Si 1.027 2.973 26 H -0.256 1.256 27 H -0.270 1.270 28 H -0.253 1.253 29 C -0.203 4.203 30 H 0.127 0.873 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.252 0.748 34 H 0.223 0.777 35 H 0.122 0.878 36 H 0.128 0.872 37 H 0.091 0.909 38 H 0.148 0.852 39 H 0.157 0.843 40 H 0.126 0.874 41 H 0.273 0.727 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.379 -27.641 7.567 43.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.265 3.735 3 O -0.379 6.379 4 C -0.316 4.316 5 C 0.108 3.892 6 N -0.146 5.146 7 H 0.303 0.697 8 C 0.052 3.948 9 C -0.312 4.312 10 C 0.146 3.854 11 N -0.397 5.397 12 C 0.290 3.710 13 O -0.448 6.448 14 C -0.133 4.133 15 C -0.026 4.026 16 C -0.199 4.199 17 C -0.082 4.082 18 C -0.263 4.263 19 C 0.066 3.934 20 O -0.144 6.144 21 C -0.494 4.494 22 H 0.122 0.878 23 C -0.225 4.225 24 N -0.564 5.564 25 Si 0.845 3.155 26 H -0.180 1.180 27 H -0.195 1.195 28 H -0.177 1.177 29 C -0.223 4.223 30 H 0.146 0.854 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.268 0.732 34 H 0.239 0.761 35 H 0.140 0.860 36 H 0.146 0.854 37 H 0.109 0.891 38 H 0.166 0.834 39 H 0.175 0.825 40 H 0.144 0.856 41 H 0.082 0.918 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -31.676 -26.060 6.857 41.587 hybrid contribution 1.719 0.522 -0.492 1.863 sum -29.957 -25.538 6.364 39.876 Atomic orbital electron populations 1.22264 0.89453 1.07181 1.05298 1.22707 0.93083 0.86655 0.71029 1.90680 1.73308 1.35817 1.38125 1.21270 0.90114 0.96798 1.23424 1.23420 1.00541 0.82382 0.82863 1.41141 1.05812 1.10820 1.56805 0.69707 1.22247 0.82985 1.00717 0.88890 1.21718 1.01639 0.92744 1.15135 1.20447 0.93490 0.87839 0.83636 1.68136 1.06625 1.28109 1.36865 1.21646 0.87362 0.75554 0.86421 1.90719 1.70025 1.42808 1.41221 1.20726 0.90627 1.03642 0.98292 1.19246 0.93852 0.93799 0.95703 1.20903 0.94982 0.97964 1.06067 1.21171 0.93610 0.97757 0.95637 1.21314 1.01110 0.96007 1.07864 1.19792 0.91744 0.89788 0.92055 1.83955 1.19949 1.43327 1.67149 1.21886 0.78442 1.05944 1.43090 0.87797 1.26782 1.06558 0.93806 0.95387 1.70223 1.38401 1.08230 1.39574 0.84554 0.72473 0.78652 0.79841 1.17982 1.19473 1.17711 1.20137 0.91455 1.01893 1.08770 0.85419 0.88488 0.88938 0.73240 0.76099 0.86028 0.85389 0.89068 0.83384 0.82510 0.85596 0.91800 0.89272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.86 10.20 71.23 0.73 -0.13 16 2 C 0.39 7.48 7.22 27.87 0.20 7.68 16 3 O -0.50 -17.62 16.12 -3.16 -0.05 -17.67 16 4 C -0.31 -4.61 6.05 -18.70 -0.11 -4.72 16 5 C 0.25 -0.70 10.65 84.41 0.90 0.20 16 6 N -0.54 3.73 5.15 -193.82 -1.00 2.73 16 7 H 0.46 -8.29 8.87 -92.71 -0.82 -9.12 16 8 C 0.18 0.37 11.09 83.42 0.93 1.29 16 9 C -0.29 -5.54 9.05 22.31 0.20 -5.33 16 10 C 0.30 8.28 6.78 41.87 0.28 8.56 16 11 N -0.66 -26.64 8.77 -301.33 -2.64 -29.29 16 12 C 0.50 22.05 6.17 88.00 0.54 22.59 16 13 O -0.57 -28.94 15.50 -4.25 -0.07 -29.01 16 14 C -0.09 -3.74 5.90 29.10 0.17 -3.56 16 15 C -0.03 -1.15 4.37 -19.88 -0.09 -1.24 16 16 C -0.18 -7.04 9.70 22.30 0.22 -6.82 16 17 C -0.06 -2.56 10.04 22.25 0.22 -2.33 16 18 C -0.24 -12.25 9.17 22.39 0.21 -12.05 16 19 C 0.12 6.91 6.65 22.58 0.15 7.06 16 20 O -0.24 -16.31 9.76 -22.76 -0.22 -16.53 16 21 C -0.42 -26.88 9.49 67.92 0.64 -26.23 16 22 H 0.10 6.07 5.20 -2.91 -0.02 6.05 16 23 C -0.03 -1.78 5.49 84.83 0.47 -1.31 16 24 N -0.93 -62.05 13.67 21.61 0.30 -61.75 16 25 Si 1.03 46.33 29.55 68.60 2.03 48.35 16 26 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 27 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 28 H -0.25 -10.58 7.11 99.48 0.71 -9.87 16 29 C -0.20 -11.26 9.64 22.39 0.22 -11.05 16 30 H 0.13 -1.01 5.65 -2.39 -0.01 -1.02 16 31 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.25 -4.06 5.95 -2.91 -0.02 -4.08 16 34 H 0.22 -1.61 8.06 -2.91 -0.02 -1.63 16 35 H 0.12 3.26 6.39 -2.91 -0.02 3.24 16 36 H 0.13 4.05 8.08 -2.39 -0.02 4.03 16 37 H 0.09 3.77 8.08 -2.39 -0.02 3.75 16 38 H 0.15 4.39 8.06 -2.91 -0.02 4.36 16 39 H 0.16 4.69 8.06 -2.91 -0.02 4.67 16 40 H 0.13 6.19 5.64 -2.91 -0.02 6.17 16 41 H 0.27 16.69 8.31 -92.71 -0.77 15.92 16 42 H 0.09 5.19 8.06 -2.91 -0.02 5.17 16 Total: -1.00 -127.51 368.21 4.49 -123.02 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: 0.28 Total: 7.54 kcal Atomic # 6 Polarization: -33.28 SS G_CDS: 5.87 Total: -27.41 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -3.35 Total: -88.30 kcal Atomic # 8 Polarization: -62.87 SS G_CDS: -0.34 Total: -63.21 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.35 kcal Total: -127.51 4.49 -123.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459188359.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.270 kcal (2) G-P(sol) polarization free energy of solvation -127.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -123.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds