Wall clock time and date at job start Sat Apr 11 2020 05:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.70043 * 2 1 4 4 O 1.43181 * 109.74056 * 120.59981 * 2 1 3 5 5 C 1.36105 * 116.71306 * 165.88922 * 4 2 1 6 6 C 1.38704 * 119.40097 * 162.81878 * 5 4 2 7 7 C 1.38189 * 120.06768 * 179.82741 * 6 5 4 8 8 C 1.38255 * 120.11799 * 359.97438 * 7 6 5 9 9 C 1.38201 * 120.10746 * 0.10681 * 8 7 6 10 10 C 1.38701 * 120.06467 * 359.94374 * 9 8 7 11 11 O 1.36116 * 119.38883 * 179.72008 * 10 9 8 12 12 C 1.43180 * 116.68932 * 162.86906 * 11 10 9 13 13 H 1.09001 * 109.74162 * 165.97694 * 12 11 10 14 14 C 1.50703 * 109.70698 * 286.57681 * 12 11 10 15 15 O 1.21268 * 119.99808 * 24.96974 * 14 12 11 16 16 N 1.34775 * 119.99988 * 204.95985 * 14 12 11 17 17 C 1.37212 * 119.99902 * 5.16517 * 16 14 12 18 18 H 1.07991 * 120.00191 * 41.11656 * 17 16 14 19 19 C 1.38895 * 119.99286 * 221.11700 * 17 16 14 20 20 N 1.31412 * 119.99757 * 204.85726 * 19 17 16 21 21 Si 1.86798 * 120.00342 * 24.86512 * 19 17 16 22 22 H 1.48499 * 109.47178 * 95.63769 * 21 19 17 23 23 H 1.48506 * 109.47051 * 215.63183 * 21 19 17 24 24 H 1.48498 * 109.47477 * 335.63275 * 21 19 17 25 25 C 1.39423 * 120.00028 * 185.15721 * 16 14 12 26 26 C 1.39071 * 119.70071 * 193.28288 * 25 16 14 27 27 C 1.38377 * 119.09748 * 180.27397 * 26 25 16 28 28 C 1.38819 * 118.49604 * 359.50839 * 27 26 25 29 29 C 1.38149 * 119.31243 * 0.49140 * 28 27 26 30 30 N 1.31878 * 120.84813 * 359.75092 * 29 28 27 31 31 H 1.09005 * 109.46631 * 183.95372 * 1 2 3 32 32 H 1.09001 * 109.47558 * 303.95434 * 1 2 3 33 33 H 1.08998 * 109.47039 * 63.95688 * 1 2 3 34 34 H 1.08001 * 119.96261 * 359.83685 * 6 5 4 35 35 H 1.08001 * 119.94585 * 180.02562 * 7 6 5 36 36 H 1.07991 * 119.94957 * 180.02562 * 8 7 6 37 37 H 1.07999 * 119.96745 * 179.97438 * 9 8 7 38 38 H 0.97004 * 120.00565 * 179.97438 * 20 19 17 39 39 H 1.07995 * 120.44455 * 359.97438 * 26 25 16 40 40 H 1.08006 * 120.74678 * 179.72470 * 27 26 25 41 41 H 1.07998 * 120.34861 * 180.26398 * 28 27 26 42 42 H 1.07993 * 119.57745 * 179.72484 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0261 0.0000 4 8 2.0136 -0.6860 1.1600 5 6 3.3301 -1.0316 1.1620 6 6 3.9452 -1.3632 2.3601 7 6 5.2802 -1.7196 2.3776 8 6 6.0064 -1.7471 1.2014 9 6 5.4000 -1.4162 0.0044 10 6 4.0606 -1.0566 -0.0199 11 8 3.4788 -0.7277 -1.2057 12 6 2.0475 -0.7355 -1.2437 13 1 1.7003 -0.2264 -2.1428 14 6 1.5467 -2.1569 -1.2391 15 8 2.2311 -3.0393 -0.7662 16 7 0.3383 -2.4473 -1.7604 17 6 -0.3903 -1.4696 -2.3898 18 1 0.1024 -0.7660 -3.0443 19 6 -1.7614 -1.3851 -2.1850 20 7 -2.5282 -0.8252 -3.0936 21 14 -2.5156 -2.0669 -0.6179 22 1 -2.6714 -0.9723 0.3734 23 1 -3.8462 -2.6517 -0.9227 24 1 -1.6290 -3.1188 -0.0587 25 6 -0.1715 -3.7411 -1.6602 26 6 -1.2725 -4.1091 -2.4260 27 6 -1.7717 -5.3947 -2.3125 28 6 -1.1438 -6.2745 -1.4414 29 6 -0.0540 -5.8411 -0.7114 30 7 0.3967 -4.6081 -0.8366 31 1 -0.3633 -1.0253 0.0709 32 1 -0.3634 0.5740 0.8524 33 1 -0.3633 0.4512 -0.9233 34 1 3.3801 -1.3431 3.2803 35 1 5.7571 -1.9779 3.3116 36 1 7.0494 -2.0264 1.2181 37 1 5.9695 -1.4381 -0.9130 38 1 -3.4859 -0.7665 -2.9508 39 1 -1.7346 -3.3996 -3.0964 40 1 -2.6283 -5.7075 -2.8912 41 1 -1.5058 -7.2862 -1.3326 42 1 0.4350 -6.5206 -0.0292 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001461245174.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:09 Heat of formation + Delta-G solvation = 4.683191 kcal Electronic energy + Delta-G solvation = -31203.675811 eV Core-core repulsion = 27116.559362 eV Total energy + Delta-G solvation = -4087.116450 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.36492 -40.02828 -38.26810 -37.17017 -36.81641 -35.37394 -32.59806 -32.52337 -31.54524 -30.40861 -29.56223 -28.71871 -26.98206 -25.44957 -23.54275 -23.00453 -22.44289 -22.25584 -21.00367 -19.12668 -18.59979 -18.24112 -17.55769 -16.39111 -16.25526 -15.94402 -15.43543 -15.23945 -14.96756 -14.77678 -14.50728 -14.20090 -14.01883 -13.72732 -13.52036 -13.47832 -13.26478 -13.02708 -12.63239 -12.42726 -12.36983 -12.13316 -11.91100 -11.68255 -11.59415 -11.39937 -11.24915 -11.06978 -10.94260 -10.47761 -10.18320 -10.03080 -9.72746 -9.31695 -9.17387 -8.86855 -8.45731 -8.20707 -7.59786 -7.45501 -6.89488 -4.54780 1.61540 1.66739 1.76937 2.00906 2.94743 3.05817 3.18026 3.23622 3.29568 3.65104 3.82952 3.93285 4.07764 4.36525 4.55952 4.82416 4.98933 5.06411 5.17632 5.24011 5.34700 5.41141 5.47761 5.55309 5.56562 5.70657 5.73832 5.77110 5.90442 6.03416 6.07737 6.14696 6.30007 6.41183 6.49141 6.53358 6.64621 6.71691 6.75782 6.83860 6.93814 7.01461 7.27698 7.36791 7.65568 7.78412 7.89996 8.42808 8.66440 8.93196 9.34438 10.15449 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014390 B = 0.005302 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.280718 B = 5279.827882 C = 6188.112832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.074 3.926 3 H 0.089 0.911 4 O -0.304 6.304 5 C 0.072 3.928 6 C -0.120 4.120 7 C -0.123 4.123 8 C -0.125 4.125 9 C -0.115 4.115 10 C 0.072 3.928 11 O -0.291 6.291 12 C 0.048 3.952 13 H 0.158 0.842 14 C 0.477 3.523 15 O -0.493 6.493 16 N -0.397 5.397 17 C -0.383 4.383 18 H 0.116 0.884 19 C 0.094 3.906 20 N -0.829 5.829 21 Si 0.850 3.150 22 H -0.269 1.269 23 H -0.279 1.279 24 H -0.251 1.251 25 C 0.375 3.625 26 C -0.208 4.208 27 C -0.063 4.063 28 C -0.236 4.236 29 C 0.123 3.877 30 N -0.492 5.492 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.108 0.892 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.283 0.717 39 H 0.154 0.846 40 H 0.126 0.874 41 H 0.122 0.878 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.492 0.080 4.932 7.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.017 3.983 3 H 0.107 0.893 4 O -0.218 6.218 5 C 0.027 3.973 6 C -0.139 4.139 7 C -0.141 4.141 8 C -0.143 4.143 9 C -0.134 4.134 10 C 0.027 3.973 11 O -0.205 6.205 12 C -0.012 4.012 13 H 0.175 0.825 14 C 0.264 3.736 15 O -0.366 6.366 16 N -0.112 5.112 17 C -0.508 4.508 18 H 0.134 0.866 19 C -0.119 4.119 20 N -0.460 5.460 21 Si 0.675 3.325 22 H -0.195 1.195 23 H -0.205 1.205 24 H -0.174 1.174 25 C 0.145 3.855 26 C -0.231 4.231 27 C -0.088 4.088 28 C -0.258 4.258 29 C -0.036 4.036 30 N -0.208 5.208 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.126 0.874 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.094 0.906 39 H 0.172 0.828 40 H 0.144 0.856 41 H 0.140 0.860 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.398 0.122 5.527 8.456 hybrid contribution -1.664 -0.610 -0.002 1.772 sum 4.734 -0.488 5.525 7.292 Atomic orbital electron populations 1.22142 0.89741 1.04237 1.03912 1.23011 0.97770 0.94540 0.82948 0.89314 1.86320 1.21579 1.73034 1.40894 1.18879 0.84060 1.00969 0.93432 1.20339 0.94698 1.03320 0.95561 1.20753 0.93292 1.01805 0.98298 1.20759 0.99812 1.01933 0.91786 1.20338 0.92275 1.01717 0.99058 1.18835 0.93515 1.00830 0.84165 1.86368 1.19822 1.83781 1.30502 1.23246 0.79047 0.96141 1.02727 0.82527 1.20868 0.83312 0.90153 0.79227 1.90720 1.55717 1.47608 1.42601 1.41501 1.16301 1.05086 1.48312 1.18940 0.91025 1.11946 1.28867 0.86631 1.25332 0.95897 0.94354 0.96281 1.69809 1.06241 1.39106 1.30793 0.87305 0.79846 0.80787 0.84550 1.19479 1.20458 1.17447 1.18835 0.90402 0.85894 0.90333 1.21905 0.99845 0.98024 1.03369 1.21283 0.98230 0.92804 0.96524 1.21780 1.00502 1.00737 1.02786 1.22433 0.92909 0.91928 0.96354 1.67588 1.30973 1.03026 1.19191 0.91073 0.92255 0.87399 0.85433 0.85720 0.85693 0.85357 0.90637 0.82807 0.85638 0.86023 0.83776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 6.98 37.16 0.26 -2.43 16 2 C 0.07 1.37 3.34 -26.48 -0.09 1.28 16 3 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 4 O -0.30 -6.18 9.71 -32.86 -0.32 -6.49 16 5 C 0.07 1.40 5.86 -39.14 -0.23 1.17 16 6 C -0.12 -2.00 9.96 -39.43 -0.39 -2.39 16 7 C -0.12 -1.73 10.04 -39.59 -0.40 -2.13 16 8 C -0.12 -1.75 10.04 -39.59 -0.40 -2.15 16 9 C -0.12 -1.90 9.96 -39.42 -0.39 -2.29 16 10 C 0.07 1.39 5.31 -39.14 -0.21 1.18 16 11 O -0.29 -5.83 10.07 -46.39 -0.47 -6.29 16 12 C 0.05 0.96 2.96 -27.63 -0.08 0.88 16 13 H 0.16 2.83 6.43 -51.93 -0.33 2.50 16 14 C 0.48 11.28 5.72 -10.98 -0.06 11.22 16 15 O -0.49 -12.94 13.49 -12.78 -0.17 -13.11 16 16 N -0.40 -9.44 1.87 -60.71 -0.11 -9.55 16 17 C -0.38 -8.80 5.71 -14.90 -0.09 -8.88 16 18 H 0.12 2.66 6.85 -52.49 -0.36 2.30 16 19 C 0.09 2.17 2.89 -17.49 -0.05 2.12 16 20 N -0.83 -19.67 13.96 55.49 0.77 -18.89 16 21 Si 0.85 19.24 21.94 -169.99 -3.73 15.51 16 22 H -0.27 -5.93 7.10 56.52 0.40 -5.53 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.25 -6.17 5.43 56.52 0.31 -5.87 16 25 C 0.38 9.00 4.49 -154.64 -0.69 8.31 16 26 C -0.21 -4.56 6.45 -39.22 -0.25 -4.81 16 27 C -0.06 -1.16 10.17 -39.32 -0.40 -1.56 16 28 C -0.24 -4.10 10.11 -39.40 -0.40 -4.50 16 29 C 0.12 2.42 11.18 -17.56 -0.20 2.22 16 30 N -0.49 -11.81 8.05 -12.34 -0.10 -11.91 16 31 H 0.07 1.55 3.27 -51.93 -0.17 1.38 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.11 1.96 6.55 -51.93 -0.34 1.62 16 34 H 0.13 1.89 8.06 -52.49 -0.42 1.46 16 35 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 36 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 37 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 38 H 0.28 6.34 8.31 -40.82 -0.34 6.00 16 39 H 0.15 3.50 5.71 -52.49 -0.30 3.20 16 40 H 0.13 1.90 8.06 -52.48 -0.42 1.48 16 41 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.14 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 329.67 15.07 4.97 4.97 Total: -1.00 -30.12 329.67 -7.76 -37.89 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -4.54 Total: 10.66 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -4.07 Total: -2.77 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 0.56 Total: -40.36 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.96 Total: -25.90 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -3.73 Total: 15.51 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.12 -7.76 -37.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461245174.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.572 kcal (2) G-P(sol) polarization free energy of solvation -30.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds