Wall clock time and date at job start Sat Apr 11 2020 05:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.70043 * 2 1 4 4 O 1.43181 * 109.74056 * 120.59981 * 2 1 3 5 5 C 1.36105 * 116.71306 * 165.88922 * 4 2 1 6 6 C 1.38704 * 119.40097 * 162.81878 * 5 4 2 7 7 C 1.38189 * 120.06768 * 179.82741 * 6 5 4 8 8 C 1.38255 * 120.11799 * 359.97438 * 7 6 5 9 9 C 1.38201 * 120.10746 * 0.10681 * 8 7 6 10 10 C 1.38701 * 120.06467 * 359.94374 * 9 8 7 11 11 O 1.36116 * 119.38883 * 179.72008 * 10 9 8 12 12 C 1.43180 * 116.68932 * 162.86906 * 11 10 9 13 13 H 1.09001 * 109.74162 * 165.97694 * 12 11 10 14 14 C 1.50703 * 109.70698 * 286.57681 * 12 11 10 15 15 O 1.21268 * 119.99808 * 24.96974 * 14 12 11 16 16 N 1.34775 * 119.99988 * 204.95985 * 14 12 11 17 17 C 1.37212 * 119.99902 * 5.16517 * 16 14 12 18 18 H 1.07991 * 120.00191 * 41.11656 * 17 16 14 19 19 C 1.38895 * 119.99286 * 221.11700 * 17 16 14 20 20 N 1.31412 * 119.99757 * 204.85726 * 19 17 16 21 21 Si 1.86798 * 120.00342 * 24.86512 * 19 17 16 22 22 H 1.48499 * 109.47178 * 95.63769 * 21 19 17 23 23 H 1.48506 * 109.47051 * 215.63183 * 21 19 17 24 24 H 1.48498 * 109.47477 * 335.63275 * 21 19 17 25 25 C 1.39423 * 120.00028 * 185.15721 * 16 14 12 26 26 C 1.39071 * 119.70071 * 193.28288 * 25 16 14 27 27 C 1.38377 * 119.09748 * 180.27397 * 26 25 16 28 28 C 1.38819 * 118.49604 * 359.50839 * 27 26 25 29 29 C 1.38149 * 119.31243 * 0.49140 * 28 27 26 30 30 N 1.31878 * 120.84813 * 359.75092 * 29 28 27 31 31 H 1.09005 * 109.46631 * 183.95372 * 1 2 3 32 32 H 1.09001 * 109.47558 * 303.95434 * 1 2 3 33 33 H 1.08998 * 109.47039 * 63.95688 * 1 2 3 34 34 H 1.08001 * 119.96261 * 359.83685 * 6 5 4 35 35 H 1.08001 * 119.94585 * 180.02562 * 7 6 5 36 36 H 1.07991 * 119.94957 * 180.02562 * 8 7 6 37 37 H 1.07999 * 119.96745 * 179.97438 * 9 8 7 38 38 H 0.97004 * 120.00565 * 179.97438 * 20 19 17 39 39 H 1.07995 * 120.44455 * 359.97438 * 26 25 16 40 40 H 1.08006 * 120.74678 * 179.72470 * 27 26 25 41 41 H 1.07998 * 120.34861 * 180.26398 * 28 27 26 42 42 H 1.07993 * 119.57745 * 179.72484 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0261 0.0000 4 8 2.0136 -0.6860 1.1600 5 6 3.3301 -1.0316 1.1620 6 6 3.9452 -1.3632 2.3601 7 6 5.2802 -1.7196 2.3776 8 6 6.0064 -1.7471 1.2014 9 6 5.4000 -1.4162 0.0044 10 6 4.0606 -1.0566 -0.0199 11 8 3.4788 -0.7277 -1.2057 12 6 2.0475 -0.7355 -1.2437 13 1 1.7003 -0.2264 -2.1428 14 6 1.5467 -2.1569 -1.2391 15 8 2.2311 -3.0393 -0.7662 16 7 0.3383 -2.4473 -1.7604 17 6 -0.3903 -1.4696 -2.3898 18 1 0.1024 -0.7660 -3.0443 19 6 -1.7614 -1.3851 -2.1850 20 7 -2.5282 -0.8252 -3.0936 21 14 -2.5156 -2.0669 -0.6179 22 1 -2.6714 -0.9723 0.3734 23 1 -3.8462 -2.6517 -0.9227 24 1 -1.6290 -3.1188 -0.0587 25 6 -0.1715 -3.7411 -1.6602 26 6 -1.2725 -4.1091 -2.4260 27 6 -1.7717 -5.3947 -2.3125 28 6 -1.1438 -6.2745 -1.4414 29 6 -0.0540 -5.8411 -0.7114 30 7 0.3967 -4.6081 -0.8366 31 1 -0.3633 -1.0253 0.0709 32 1 -0.3634 0.5740 0.8524 33 1 -0.3633 0.4512 -0.9233 34 1 3.3801 -1.3431 3.2803 35 1 5.7571 -1.9779 3.3116 36 1 7.0494 -2.0264 1.2181 37 1 5.9695 -1.4381 -0.9130 38 1 -3.4859 -0.7665 -2.9508 39 1 -1.7346 -3.3996 -3.0964 40 1 -2.6283 -5.7075 -2.8912 41 1 -1.5058 -7.2862 -1.3326 42 1 0.4350 -6.5206 -0.0292 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001461245174.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:08 Heat of formation + Delta-G solvation = -13.430472 kcal Electronic energy + Delta-G solvation = -31204.461279 eV Core-core repulsion = 27116.559362 eV Total energy + Delta-G solvation = -4087.901917 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.85019 -41.60502 -39.80615 -38.54601 -38.25678 -37.13648 -34.35805 -33.97697 -33.15999 -31.69544 -31.10455 -30.03450 -28.52242 -27.18608 -25.06661 -24.42795 -23.97010 -23.58338 -22.52851 -20.80085 -20.08579 -19.71258 -19.07264 -17.94121 -17.76757 -17.52383 -17.01151 -16.77672 -16.47674 -16.29358 -15.79368 -15.71294 -15.69085 -15.28777 -14.96557 -14.84861 -14.83670 -14.68347 -14.31204 -13.92935 -13.82889 -13.64278 -13.45914 -13.28873 -12.97858 -12.81981 -12.67273 -12.55055 -12.40284 -12.14286 -11.82768 -11.60363 -11.28709 -10.99503 -10.80704 -10.60781 -10.01275 -9.55891 -9.13298 -8.95336 -8.71083 -6.35735 0.16900 0.36278 0.41463 0.45549 1.14427 1.23115 1.36287 1.61000 1.82511 2.06924 2.21341 2.33121 2.63038 2.82479 3.07348 3.24872 3.46007 3.68524 3.76000 3.86343 4.03085 4.05404 4.12184 4.17239 4.28125 4.33932 4.37686 4.46977 4.50815 4.54317 4.69752 4.72292 4.93616 4.96029 5.10533 5.20771 5.24024 5.26412 5.29287 5.39511 5.53073 5.75668 5.79162 5.86661 5.91872 6.15472 6.41844 6.67903 6.96602 7.20265 7.64081 8.37248 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014390 B = 0.005302 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.280718 B = 5279.827882 C = 6188.112832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.077 3.923 3 H 0.118 0.882 4 O -0.325 6.325 5 C 0.040 3.960 6 C -0.134 4.134 7 C -0.112 4.112 8 C -0.115 4.115 9 C -0.128 4.128 10 C 0.037 3.963 11 O -0.302 6.302 12 C 0.051 3.949 13 H 0.167 0.833 14 C 0.468 3.532 15 O -0.530 6.530 16 N -0.405 5.405 17 C -0.376 4.376 18 H 0.110 0.890 19 C 0.090 3.910 20 N -0.850 5.850 21 Si 0.885 3.115 22 H -0.266 1.266 23 H -0.277 1.277 24 H -0.279 1.279 25 C 0.345 3.655 26 C -0.226 4.226 27 C -0.060 4.060 28 C -0.212 4.212 29 C 0.104 3.896 30 N -0.531 5.531 31 H 0.040 0.960 32 H 0.077 0.923 33 H 0.109 0.891 34 H 0.139 0.861 35 H 0.166 0.834 36 H 0.167 0.833 37 H 0.140 0.860 38 H 0.288 0.712 39 H 0.140 0.860 40 H 0.164 0.836 41 H 0.172 0.828 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.058 -1.187 5.989 8.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.021 3.979 3 H 0.135 0.865 4 O -0.240 6.240 5 C -0.005 4.005 6 C -0.153 4.153 7 C -0.130 4.130 8 C -0.133 4.133 9 C -0.146 4.146 10 C -0.007 4.007 11 O -0.216 6.216 12 C -0.009 4.009 13 H 0.184 0.816 14 C 0.257 3.743 15 O -0.406 6.406 16 N -0.121 5.121 17 C -0.501 4.501 18 H 0.127 0.873 19 C -0.121 4.121 20 N -0.482 5.482 21 Si 0.712 3.288 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.205 1.205 25 C 0.116 3.884 26 C -0.250 4.250 27 C -0.086 4.086 28 C -0.233 4.233 29 C -0.054 4.054 30 N -0.248 5.248 31 H 0.059 0.941 32 H 0.096 0.904 33 H 0.127 0.873 34 H 0.156 0.844 35 H 0.184 0.816 36 H 0.184 0.816 37 H 0.158 0.842 38 H 0.099 0.901 39 H 0.157 0.843 40 H 0.182 0.818 41 H 0.189 0.811 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 6.943 -1.143 6.579 9.633 hybrid contribution -1.751 -0.411 -0.267 1.818 sum 5.192 -1.553 6.313 8.320 Atomic orbital electron populations 1.22075 0.90222 1.02466 1.04800 1.23101 0.97369 0.95524 0.81947 0.86460 1.86251 1.22675 1.73732 1.41387 1.19285 0.83802 1.02762 0.94631 1.20731 0.96100 1.03285 0.95136 1.21274 0.92146 0.99479 1.00104 1.21279 1.01602 0.99743 0.90633 1.20743 0.91476 1.01524 1.00868 1.19253 0.94728 1.02884 0.83865 1.86325 1.19560 1.84193 1.31498 1.23241 0.79472 0.94223 1.03942 0.81603 1.21472 0.83060 0.91307 0.78464 1.90659 1.56657 1.48979 1.44353 1.41626 1.16452 1.05500 1.48475 1.18854 0.91038 1.11917 1.28273 0.87269 1.25377 0.95854 0.94210 0.96609 1.69809 1.06718 1.40286 1.31414 0.86824 0.78666 0.79709 0.83643 1.19154 1.20245 1.20498 1.19104 0.91518 0.86242 0.91555 1.21920 0.99897 0.99551 1.03598 1.21806 0.98884 0.91440 0.96466 1.22274 0.98452 1.02490 1.00124 1.23086 0.93945 0.91114 0.97218 1.67535 1.32424 1.04754 1.20050 0.94149 0.90385 0.87263 0.84352 0.81613 0.81576 0.84195 0.90080 0.84251 0.81800 0.81069 0.81053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.31 6.98 71.98 0.50 -4.81 16 2 C 0.08 2.91 3.34 30.75 0.10 3.01 16 3 H 0.12 3.66 8.14 -2.39 -0.02 3.64 16 4 O -0.32 -13.59 9.71 -82.52 -0.80 -14.40 16 5 C 0.04 1.57 5.86 22.56 0.13 1.70 16 6 C -0.13 -4.32 9.96 22.37 0.22 -4.10 16 7 C -0.11 -2.83 10.04 22.26 0.22 -2.61 16 8 C -0.11 -2.89 10.04 22.27 0.22 -2.67 16 9 C -0.13 -4.11 9.96 22.37 0.22 -3.88 16 10 C 0.04 1.46 5.31 22.56 0.12 1.58 16 11 O -0.30 -12.50 10.07 -69.73 -0.70 -13.20 16 12 C 0.05 2.11 2.96 30.01 0.09 2.20 16 13 H 0.17 6.30 6.43 -2.39 -0.02 6.28 16 14 C 0.47 23.10 5.72 87.66 0.50 23.60 16 15 O -0.53 -29.05 13.49 14.55 0.20 -28.86 16 16 N -0.41 -19.99 1.87 -464.38 -0.87 -20.86 16 17 C -0.38 -17.84 5.71 84.01 0.48 -17.36 16 18 H 0.11 5.22 6.85 -2.92 -0.02 5.20 16 19 C 0.09 4.25 2.89 84.91 0.25 4.50 16 20 N -0.85 -40.66 13.96 21.65 0.30 -40.36 16 21 Si 0.89 40.28 21.94 68.60 1.50 41.78 16 22 H -0.27 -11.70 7.10 99.48 0.71 -10.99 16 23 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 24 H -0.28 -14.14 5.43 99.48 0.54 -13.60 16 25 C 0.34 16.92 4.49 132.91 0.60 17.51 16 26 C -0.23 -9.93 6.45 22.50 0.15 -9.79 16 27 C -0.06 -2.10 10.17 22.44 0.23 -1.87 16 28 C -0.21 -6.71 10.11 22.39 0.23 -6.48 16 29 C 0.10 3.98 11.18 84.66 0.95 4.93 16 30 N -0.53 -25.93 8.05 -192.95 -1.55 -27.48 16 31 H 0.04 1.80 3.27 -2.38 -0.01 1.79 16 32 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.11 4.06 6.55 -2.39 -0.02 4.05 16 34 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 35 H 0.17 2.78 8.06 -2.91 -0.02 2.75 16 36 H 0.17 2.78 8.06 -2.92 -0.02 2.75 16 37 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 38 H 0.29 12.92 8.31 -92.71 -0.77 12.15 16 39 H 0.14 6.45 5.71 -2.91 -0.02 6.43 16 40 H 0.16 4.34 8.06 -2.91 -0.02 4.32 16 41 H 0.17 3.71 8.06 -2.91 -0.02 3.68 16 42 H 0.17 5.32 8.06 -2.91 -0.02 5.30 16 Total: -1.00 -69.31 329.67 4.19 -65.12 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: 0.90 Total: 32.77 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 5.21 Total: 5.47 kcal Atomic # 7 Polarization: -86.58 SS G_CDS: -2.12 Total: -88.70 kcal Atomic # 8 Polarization: -55.15 SS G_CDS: -1.31 Total: -56.45 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 1.50 Total: 41.78 kcal Total: -69.31 4.19 -65.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461245174.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.690 kcal (2) G-P(sol) polarization free energy of solvation -69.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds