Wall clock time and date at job start Sat Apr 11 2020 05:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47276 * 66.81028 * 3 2 1 5 5 H 1.09003 * 109.47107 * 55.10772 * 4 3 2 6 6 N 1.46507 * 109.46989 * 295.11042 * 4 3 2 7 7 C 1.34778 * 119.99934 * 97.09525 * 6 4 3 8 8 O 1.21672 * 120.00071 * 4.85600 * 7 6 4 9 9 C 1.46887 * 119.99633 * 184.84940 * 7 6 4 10 10 C 1.36124 * 125.43357 * 185.63118 * 9 7 6 11 11 C 1.41701 * 107.74789 * 180.27795 * 10 9 7 12 12 C 1.40021 * 133.35215 * 179.77724 * 11 10 9 13 13 C 1.36576 * 119.82914 * 179.97438 * 12 11 10 14 14 C 1.38857 * 120.60226 * 359.95814 * 13 12 11 15 15 C 1.37841 * 120.63275 * 0.02578 * 14 13 12 16 16 C 1.39090 * 119.81590 * 359.97438 * 15 14 13 17 17 N 1.37833 * 133.16481 * 180.02562 * 16 15 14 18 18 C 1.36887 * 125.62065 * 359.97438 * 17 16 15 19 19 H 1.07998 * 120.00166 * 225.58079 * 18 17 16 20 20 C 1.39016 * 120.00000 * 45.58381 * 18 17 16 21 21 N 1.31347 * 119.99789 * 198.51773 * 20 18 17 22 22 Si 1.86792 * 119.99883 * 18.51034 * 20 18 17 23 23 H 1.48496 * 109.47507 * 264.77945 * 22 20 18 24 24 H 1.48507 * 109.47388 * 24.78610 * 22 20 18 25 25 H 1.48505 * 109.46836 * 144.78026 * 22 20 18 26 26 C 1.50701 * 109.47410 * 175.10899 * 4 3 2 27 27 O 1.20823 * 119.99629 * 102.41318 * 26 4 3 28 28 O 1.34222 * 120.00228 * 282.42008 * 26 4 3 29 29 C 1.45193 * 117.00492 * 179.97438 * 28 26 4 30 30 H 4.44652 * 5.63280 * 180.02562 * 4 1 2 31 31 H 1.08994 * 109.47108 * 306.80676 * 3 2 1 32 32 H 1.09005 * 109.46839 * 186.80486 * 3 2 1 33 33 H 0.96999 * 119.99779 * 277.09553 * 6 4 3 34 34 H 1.07997 * 126.12887 * 0.02562 * 10 9 7 35 35 H 1.07994 * 120.08335 * 359.97438 * 12 11 10 36 36 H 1.08001 * 119.69652 * 179.97438 * 13 12 11 37 37 H 1.08000 * 119.68035 * 180.02562 * 14 13 12 38 38 H 1.07997 * 120.09333 * 179.97438 * 15 14 13 39 39 H 0.97006 * 120.00015 * 174.98534 * 21 20 18 40 40 H 1.08997 * 109.47773 * 179.97438 * 29 28 26 41 41 H 1.08997 * 109.47259 * 300.00087 * 29 28 26 42 42 H 1.09001 * 109.46905 * 59.99557 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1564 -0.5671 -1.3259 5 1 2.7230 -0.0045 -2.1529 6 7 2.7671 -1.9752 -1.4362 7 6 1.6637 -2.3170 -2.1306 8 8 1.0404 -1.4675 -2.7391 9 6 1.2136 -3.7150 -2.1527 10 6 0.1848 -4.2011 -2.8998 11 6 0.0725 -5.5877 -2.6299 12 6 -0.7884 -6.5904 -3.0926 13 6 -0.6472 -7.8703 -2.6376 14 6 0.3443 -8.1886 -1.7191 15 6 1.2040 -7.2189 -1.2492 16 6 1.0798 -5.9083 -1.6980 17 7 1.7699 -4.7476 -1.4217 18 6 2.8276 -4.6349 -0.5601 19 1 2.8637 -3.8192 0.1469 20 6 3.8554 -5.5703 -0.5950 21 7 4.6670 -5.6929 0.4304 22 14 4.0819 -6.6531 -2.1001 23 1 3.3924 -7.9506 -1.8850 24 1 3.5035 -5.9762 -3.2886 25 1 5.5303 -6.8934 -2.3235 26 6 4.6584 -0.4558 -1.3752 27 8 5.3434 -1.4300 -1.1715 28 8 5.2354 0.7256 -1.6453 29 6 6.6866 0.7589 -1.6760 30 1 -1.0499 0.0001 -0.0002 31 1 3.0097 -0.6148 0.8228 32 1 3.0089 1.0213 0.1218 33 1 3.3036 -2.6615 -1.0095 34 1 -0.4374 -3.6313 -3.5740 35 1 -1.5621 -6.3522 -3.8075 36 1 -1.3127 -8.6419 -2.9956 37 1 0.4429 -9.2057 -1.3695 38 1 1.9718 -7.4761 -0.5346 39 1 5.3378 -6.3935 0.4370 40 1 7.0222 1.7703 -1.9051 41 1 7.0776 0.4575 -0.7043 42 1 7.0496 0.0738 -2.4421 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001468875988.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:21 Heat of formation + Delta-G solvation = 7.450774 kcal Electronic energy + Delta-G solvation = -29705.594770 eV Core-core repulsion = 25618.598332 eV Total energy + Delta-G solvation = -4086.996438 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.95939 -40.52812 -38.76549 -36.61019 -36.22048 -35.42248 -33.67538 -32.83875 -31.41561 -30.43074 -29.18136 -28.23323 -27.80165 -25.18615 -24.90947 -23.11711 -21.19326 -20.93949 -20.10507 -19.59029 -18.58804 -18.01233 -17.59262 -16.93026 -16.45848 -16.31867 -15.86609 -15.39293 -15.18825 -14.77340 -14.30141 -14.21714 -14.05632 -13.76496 -13.35321 -13.29238 -13.20778 -13.07645 -12.98726 -12.69607 -12.31011 -12.24928 -12.06549 -11.85622 -11.45300 -11.02862 -10.99789 -10.84163 -10.53915 -10.48953 -10.30911 -10.16555 -9.97926 -9.93621 -9.58750 -9.49207 -8.79904 -8.71652 -7.41359 -7.03030 -6.93761 -4.74067 1.54556 2.13214 2.42123 2.44960 2.79860 2.98256 3.08837 3.12438 3.17854 3.18500 3.67503 3.83143 4.04143 4.11756 4.48321 4.55175 4.73278 4.83383 5.03498 5.05820 5.11997 5.16662 5.40774 5.44903 5.55411 5.64255 5.67650 5.81131 5.88881 6.15001 6.19965 6.20901 6.29453 6.38359 6.56598 6.72117 6.76345 6.80920 7.12661 7.20625 7.30777 7.50643 7.59845 7.68490 7.71727 7.91622 8.02428 8.10971 8.55309 8.76485 8.96756 10.03516 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012199 B = 0.004681 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.696706 B = 5979.664441 C = 7377.878827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.187 4.187 3 C -0.012 4.012 4 C 0.157 3.843 5 H 0.131 0.869 6 N -0.714 5.714 7 C 0.604 3.396 8 O -0.545 6.545 9 C -0.013 4.013 10 C -0.156 4.156 11 C -0.126 4.126 12 C -0.076 4.076 13 C -0.160 4.160 14 C -0.129 4.129 15 C -0.102 4.102 16 C 0.066 3.934 17 N -0.273 5.273 18 C -0.378 4.378 19 H 0.123 0.877 20 C 0.092 3.908 21 N -0.816 5.816 22 Si 0.872 3.128 23 H -0.247 1.247 24 H -0.253 1.253 25 H -0.280 1.280 26 C 0.453 3.547 27 O -0.479 6.479 28 O -0.357 6.357 29 C 0.035 3.965 30 H 0.215 0.785 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.430 0.570 34 H 0.139 0.861 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.289 0.711 40 H 0.101 0.899 41 H 0.064 0.936 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.335 7.162 -1.682 7.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.187 4.187 3 C -0.050 4.050 4 C 0.049 3.951 5 H 0.148 0.852 6 N -0.378 5.378 7 C 0.394 3.606 8 O -0.423 6.423 9 C -0.127 4.127 10 C -0.183 4.183 11 C -0.131 4.131 12 C -0.094 4.094 13 C -0.179 4.179 14 C -0.149 4.149 15 C -0.122 4.122 16 C -0.048 4.048 17 N 0.062 4.938 18 C -0.504 4.504 19 H 0.140 0.860 20 C -0.125 4.125 21 N -0.443 5.443 22 Si 0.696 3.304 23 H -0.171 1.171 24 H -0.177 1.177 25 H -0.206 1.206 26 C 0.293 3.707 27 O -0.363 6.363 28 O -0.274 6.274 29 C -0.059 4.059 30 H 0.232 0.768 31 H 0.115 0.885 32 H 0.122 0.878 33 H 0.279 0.721 34 H 0.157 0.843 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.100 0.900 40 H 0.120 0.880 41 H 0.083 0.917 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.098 7.513 -1.668 7.696 hybrid contribution 0.734 -0.973 -0.274 1.249 sum 0.831 6.540 -1.942 6.872 Atomic orbital electron populations 1.24733 0.95756 1.00275 0.99240 1.22311 0.93699 1.01050 1.01647 1.18931 0.86698 1.02632 0.96710 1.20232 0.86683 0.87109 1.01080 0.85155 1.46623 1.28557 1.06935 1.55636 1.17153 0.79474 0.86512 0.77446 1.90733 1.56466 1.50109 1.45037 1.20100 1.02526 0.88773 1.01305 1.20449 1.01000 0.92796 1.04104 1.18003 0.99060 0.93811 1.02249 1.20172 0.97904 0.92036 0.99331 1.20362 1.00378 0.96096 1.01071 1.20599 0.96753 0.97949 0.99622 1.20184 1.00427 0.90269 1.01314 1.18448 0.95123 0.89241 1.01971 1.40267 1.21410 1.04163 1.27962 1.19164 0.98239 1.17489 1.15531 0.85969 1.25461 0.93687 0.96221 0.97102 1.69624 1.17320 1.29637 1.27751 0.86859 0.78240 0.82043 0.83293 1.17095 1.17683 1.20584 1.23818 0.91948 0.81315 0.73579 1.90780 1.64673 1.37711 1.43158 1.86487 1.24192 1.34889 1.81800 1.23287 0.76276 1.03494 1.02859 0.76825 0.88524 0.87843 0.72124 0.84343 0.87079 0.87232 0.86943 0.86401 0.90031 0.88047 0.91682 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.82 19.25 29.55 0.57 -2.25 16 2 C -0.19 -3.00 12.09 -37.12 -0.45 -3.45 16 3 C -0.01 -0.17 5.37 -29.52 -0.16 -0.33 16 4 C 0.16 2.56 2.74 -69.08 -0.19 2.37 16 5 H 0.13 2.09 7.17 -51.93 -0.37 1.72 16 6 N -0.71 -14.37 4.53 -56.17 -0.25 -14.62 16 7 C 0.60 13.22 7.13 -12.76 -0.09 13.13 16 8 O -0.55 -12.10 15.89 5.21 0.08 -12.02 16 9 C -0.01 -0.29 6.77 -82.25 -0.56 -0.85 16 10 C -0.16 -3.41 10.55 -39.02 -0.41 -3.82 16 11 C -0.13 -2.75 6.16 -106.89 -0.66 -3.41 16 12 C -0.08 -1.40 10.06 -39.51 -0.40 -1.80 16 13 C -0.16 -2.78 9.97 -39.95 -0.40 -3.17 16 14 C -0.13 -2.40 10.02 -39.50 -0.40 -2.80 16 15 C -0.10 -2.23 6.98 -39.41 -0.27 -2.50 16 16 C 0.07 1.55 5.15 -83.83 -0.43 1.12 16 17 N -0.27 -6.64 2.35 -56.08 -0.13 -6.77 16 18 C -0.38 -9.50 7.99 -15.01 -0.12 -9.62 16 19 H 0.12 3.16 6.77 -52.49 -0.36 2.81 16 20 C 0.09 2.31 4.93 -17.47 -0.09 2.22 16 21 N -0.82 -20.83 13.95 55.50 0.77 -20.06 16 22 Si 0.87 20.25 24.50 -169.99 -4.17 16.08 16 23 H -0.25 -5.42 5.83 56.52 0.33 -5.09 16 24 H -0.25 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 26 C 0.45 7.24 7.22 36.01 0.26 7.50 16 27 O -0.48 -9.28 15.79 -18.75 -0.30 -9.58 16 28 O -0.36 -4.65 10.56 -39.24 -0.41 -5.06 16 29 C 0.03 0.35 10.56 101.05 1.07 1.41 16 30 H 0.21 2.61 7.80 -54.10 -0.42 2.19 16 31 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.43 9.46 4.09 -40.82 -0.17 9.29 16 34 H 0.14 2.73 8.06 -52.49 -0.42 2.31 16 35 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 38 H 0.12 2.62 6.19 -52.49 -0.32 2.29 16 39 H 0.29 6.83 8.31 -40.82 -0.34 6.49 16 40 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 42 H 0.06 0.67 8.13 -51.93 -0.42 0.24 16 LS Contribution 363.81 15.07 5.48 5.48 Total: -1.00 -30.25 363.81 -6.30 -36.55 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -4.65 Total: 16.26 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -2.72 Total: -6.26 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 0.39 Total: -41.46 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.63 Total: -26.66 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.17 Total: 16.08 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.25 -6.30 -36.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001468875988.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.002 kcal (2) G-P(sol) polarization free energy of solvation -30.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds