Wall clock time and date at job start Sat Apr 11 2020 05:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47276 * 66.81028 * 3 2 1 5 5 H 1.09003 * 109.47107 * 55.10772 * 4 3 2 6 6 N 1.46507 * 109.46989 * 295.11042 * 4 3 2 7 7 C 1.34778 * 119.99934 * 97.09525 * 6 4 3 8 8 O 1.21672 * 120.00071 * 4.85600 * 7 6 4 9 9 C 1.46887 * 119.99633 * 184.84940 * 7 6 4 10 10 C 1.36124 * 125.43357 * 185.63118 * 9 7 6 11 11 C 1.41701 * 107.74789 * 180.27795 * 10 9 7 12 12 C 1.40021 * 133.35215 * 179.77724 * 11 10 9 13 13 C 1.36576 * 119.82914 * 179.97438 * 12 11 10 14 14 C 1.38857 * 120.60226 * 359.95814 * 13 12 11 15 15 C 1.37841 * 120.63275 * 0.02578 * 14 13 12 16 16 C 1.39090 * 119.81590 * 359.97438 * 15 14 13 17 17 N 1.37833 * 133.16481 * 180.02562 * 16 15 14 18 18 C 1.36887 * 125.62065 * 359.97438 * 17 16 15 19 19 H 1.07998 * 120.00166 * 225.58079 * 18 17 16 20 20 C 1.39016 * 120.00000 * 45.58381 * 18 17 16 21 21 N 1.31347 * 119.99789 * 198.51773 * 20 18 17 22 22 Si 1.86792 * 119.99883 * 18.51034 * 20 18 17 23 23 H 1.48496 * 109.47507 * 264.77945 * 22 20 18 24 24 H 1.48507 * 109.47388 * 24.78610 * 22 20 18 25 25 H 1.48505 * 109.46836 * 144.78026 * 22 20 18 26 26 C 1.50701 * 109.47410 * 175.10899 * 4 3 2 27 27 O 1.20823 * 119.99629 * 102.41318 * 26 4 3 28 28 O 1.34222 * 120.00228 * 282.42008 * 26 4 3 29 29 C 1.45193 * 117.00492 * 179.97438 * 28 26 4 30 30 H 4.44652 * 5.63280 * 180.02562 * 4 1 2 31 31 H 1.08994 * 109.47108 * 306.80676 * 3 2 1 32 32 H 1.09005 * 109.46839 * 186.80486 * 3 2 1 33 33 H 0.96999 * 119.99779 * 277.09553 * 6 4 3 34 34 H 1.07997 * 126.12887 * 0.02562 * 10 9 7 35 35 H 1.07994 * 120.08335 * 359.97438 * 12 11 10 36 36 H 1.08001 * 119.69652 * 179.97438 * 13 12 11 37 37 H 1.08000 * 119.68035 * 180.02562 * 14 13 12 38 38 H 1.07997 * 120.09333 * 179.97438 * 15 14 13 39 39 H 0.97006 * 120.00015 * 174.98534 * 21 20 18 40 40 H 1.08997 * 109.47773 * 179.97438 * 29 28 26 41 41 H 1.08997 * 109.47259 * 300.00087 * 29 28 26 42 42 H 1.09001 * 109.46905 * 59.99557 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1564 -0.5671 -1.3259 5 1 2.7230 -0.0045 -2.1529 6 7 2.7671 -1.9752 -1.4362 7 6 1.6637 -2.3170 -2.1306 8 8 1.0404 -1.4675 -2.7391 9 6 1.2136 -3.7150 -2.1527 10 6 0.1848 -4.2011 -2.8998 11 6 0.0725 -5.5877 -2.6299 12 6 -0.7884 -6.5904 -3.0926 13 6 -0.6472 -7.8703 -2.6376 14 6 0.3443 -8.1886 -1.7191 15 6 1.2040 -7.2189 -1.2492 16 6 1.0798 -5.9083 -1.6980 17 7 1.7699 -4.7476 -1.4217 18 6 2.8276 -4.6349 -0.5601 19 1 2.8637 -3.8192 0.1469 20 6 3.8554 -5.5703 -0.5950 21 7 4.6670 -5.6929 0.4304 22 14 4.0819 -6.6531 -2.1001 23 1 3.3924 -7.9506 -1.8850 24 1 3.5035 -5.9762 -3.2886 25 1 5.5303 -6.8934 -2.3235 26 6 4.6584 -0.4558 -1.3752 27 8 5.3434 -1.4300 -1.1715 28 8 5.2354 0.7256 -1.6453 29 6 6.6866 0.7589 -1.6760 30 1 -1.0499 0.0001 -0.0002 31 1 3.0097 -0.6148 0.8228 32 1 3.0089 1.0213 0.1218 33 1 3.3036 -2.6615 -1.0095 34 1 -0.4374 -3.6313 -3.5740 35 1 -1.5621 -6.3522 -3.8075 36 1 -1.3127 -8.6419 -2.9956 37 1 0.4429 -9.2057 -1.3695 38 1 1.9718 -7.4761 -0.5346 39 1 5.3378 -6.3935 0.4370 40 1 7.0222 1.7703 -1.9051 41 1 7.0776 0.4575 -0.7043 42 1 7.0496 0.0738 -2.4421 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001468875988.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:20 Heat of formation + Delta-G solvation = -9.847678 kcal Electronic energy + Delta-G solvation = -29706.344887 eV Core-core repulsion = 25618.598332 eV Total energy + Delta-G solvation = -4087.746555 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.56791 -41.87472 -40.31610 -37.87975 -37.77766 -36.83044 -35.45478 -34.24271 -33.12222 -31.79936 -30.75175 -29.78404 -28.77925 -26.80237 -26.37622 -24.60545 -22.83041 -22.32918 -21.58371 -21.20779 -20.30716 -19.31294 -18.94738 -18.24241 -17.93877 -17.63495 -17.48991 -16.77342 -16.72249 -16.43296 -15.96304 -15.65233 -15.47257 -15.11550 -15.01690 -14.76956 -14.64360 -14.53339 -14.32800 -14.11653 -13.92800 -13.67841 -13.43395 -13.20608 -12.96235 -12.78237 -12.48695 -12.31557 -12.00815 -11.90820 -11.80428 -11.55938 -11.46186 -11.36235 -11.31608 -11.05988 -10.46485 -10.27485 -9.06399 -8.86829 -8.63442 -6.63402 -0.06460 0.84117 0.89059 1.07625 1.14485 1.21101 1.28679 1.32207 1.89705 1.91676 1.96447 2.16232 2.31176 2.45306 2.75195 3.13927 3.34651 3.66942 3.77975 3.83381 3.95771 4.03800 4.27544 4.29153 4.29840 4.37169 4.47461 4.57672 4.60337 4.66487 4.67135 4.79793 5.01253 5.06221 5.11138 5.13716 5.23270 5.26328 5.33903 5.66192 5.70562 5.80508 5.97466 6.03442 6.37617 6.37996 6.48559 6.71067 6.73289 7.08046 7.18372 8.18769 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012199 B = 0.004681 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.696706 B = 5979.664441 C = 7377.878827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.215 4.215 3 C -0.008 4.008 4 C 0.153 3.847 5 H 0.135 0.865 6 N -0.717 5.717 7 C 0.602 3.398 8 O -0.555 6.555 9 C -0.041 4.041 10 C -0.152 4.152 11 C -0.145 4.145 12 C -0.073 4.073 13 C -0.152 4.152 14 C -0.109 4.109 15 C -0.142 4.142 16 C 0.047 3.953 17 N -0.295 5.295 18 C -0.380 4.380 19 H 0.101 0.899 20 C 0.067 3.933 21 N -0.849 5.849 22 Si 0.913 3.087 23 H -0.226 1.226 24 H -0.281 1.281 25 H -0.276 1.276 26 C 0.464 3.536 27 O -0.519 6.519 28 O -0.347 6.347 29 C 0.026 3.974 30 H 0.239 0.761 31 H 0.091 0.909 32 H 0.141 0.859 33 H 0.421 0.579 34 H 0.157 0.843 35 H 0.147 0.853 36 H 0.157 0.843 37 H 0.147 0.853 38 H 0.103 0.897 39 H 0.294 0.706 40 H 0.144 0.856 41 H 0.065 0.935 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.924 6.505 -2.986 7.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.215 4.215 3 C -0.045 4.045 4 C 0.047 3.953 5 H 0.153 0.847 6 N -0.377 5.377 7 C 0.392 3.608 8 O -0.435 6.435 9 C -0.154 4.154 10 C -0.179 4.179 11 C -0.149 4.149 12 C -0.091 4.091 13 C -0.171 4.171 14 C -0.129 4.129 15 C -0.162 4.162 16 C -0.066 4.066 17 N 0.038 4.962 18 C -0.507 4.507 19 H 0.118 0.882 20 C -0.146 4.146 21 N -0.479 5.479 22 Si 0.736 3.264 23 H -0.149 1.149 24 H -0.206 1.206 25 H -0.202 1.202 26 C 0.306 3.694 27 O -0.407 6.407 28 O -0.263 6.263 29 C -0.067 4.067 30 H 0.255 0.745 31 H 0.109 0.891 32 H 0.159 0.841 33 H 0.268 0.732 34 H 0.175 0.825 35 H 0.164 0.836 36 H 0.174 0.826 37 H 0.164 0.836 38 H 0.122 0.878 39 H 0.105 0.895 40 H 0.161 0.839 41 H 0.084 0.916 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.486 6.885 -2.963 7.641 hybrid contribution 1.071 -0.757 0.056 1.313 sum -0.416 6.128 -2.907 6.795 Atomic orbital electron populations 1.25506 0.96777 0.99821 0.98456 1.22854 0.94654 1.01608 1.02369 1.18991 0.86005 1.04436 0.95061 1.20453 0.87271 0.85096 1.02511 0.84745 1.46604 1.27870 1.08476 1.54785 1.17109 0.79892 0.86228 0.77606 1.90700 1.56941 1.50185 1.45659 1.20509 1.03199 0.89398 1.02292 1.20777 1.00326 0.93326 1.03521 1.18402 0.99679 0.94456 1.02402 1.20647 0.97562 0.91690 0.99211 1.20892 0.99949 0.96710 0.99513 1.21131 0.95061 0.98715 0.98028 1.20314 1.02286 0.90633 1.03007 1.18929 0.95709 0.89545 1.02465 1.40264 1.21974 1.04934 1.29011 1.18958 0.99035 1.17145 1.15531 0.88158 1.25829 0.93460 0.97039 0.98267 1.69650 1.18441 1.30924 1.28860 0.86288 0.78053 0.81829 0.80247 1.14921 1.20604 1.20231 1.23664 0.91618 0.81550 0.72572 1.90773 1.65417 1.39219 1.45282 1.86478 1.26106 1.32849 1.80838 1.23669 0.74195 1.05960 1.02869 0.74487 0.89072 0.84113 0.73224 0.82497 0.83550 0.82554 0.83557 0.87844 0.89521 0.83855 0.91605 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.78 19.25 74.32 1.43 -4.35 16 2 C -0.21 -6.93 12.09 31.12 0.38 -6.55 16 3 C -0.01 -0.22 5.37 28.79 0.15 -0.06 16 4 C 0.15 5.11 2.74 44.24 0.12 5.24 16 5 H 0.13 4.36 7.17 -2.39 -0.02 4.34 16 6 N -0.72 -30.16 4.53 -449.86 -2.04 -32.20 16 7 C 0.60 27.16 7.13 86.51 0.62 27.78 16 8 O -0.56 -24.96 15.89 -4.26 -0.07 -25.03 16 9 C -0.04 -1.95 6.77 39.91 0.27 -1.68 16 10 C -0.15 -6.59 10.55 22.63 0.24 -6.35 16 11 C -0.14 -6.11 6.16 -21.33 -0.13 -6.24 16 12 C -0.07 -2.41 10.06 22.31 0.22 -2.19 16 13 C -0.15 -4.51 9.97 22.03 0.22 -4.29 16 14 C -0.11 -3.69 10.02 22.32 0.22 -3.46 16 15 C -0.14 -6.09 6.98 22.38 0.16 -5.93 16 16 C 0.05 2.19 5.15 39.06 0.20 2.39 16 17 N -0.29 -14.84 2.35 -331.34 -0.78 -15.62 16 18 C -0.38 -20.13 7.99 84.09 0.67 -19.46 16 19 H 0.10 5.60 6.77 -2.91 -0.02 5.58 16 20 C 0.07 3.52 4.93 84.95 0.42 3.94 16 21 N -0.85 -45.21 13.95 21.67 0.30 -44.91 16 22 Si 0.91 42.77 24.50 68.60 1.68 44.45 16 23 H -0.23 -9.69 5.83 99.48 0.58 -9.11 16 24 H -0.28 -14.31 7.11 99.48 0.71 -13.60 16 25 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 26 C 0.46 15.08 7.22 71.24 0.51 15.60 16 27 O -0.52 -20.97 15.79 21.97 0.35 -20.62 16 28 O -0.35 -8.72 10.56 -51.34 -0.54 -9.26 16 29 C 0.03 0.49 10.56 113.37 1.20 1.68 16 30 H 0.24 5.59 7.80 -4.42 -0.03 5.56 16 31 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.14 2.87 8.14 -2.38 -0.02 2.85 16 33 H 0.42 19.74 4.09 -92.71 -0.38 19.36 16 34 H 0.16 6.01 8.06 -2.91 -0.02 5.99 16 35 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 36 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 37 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 38 H 0.10 4.64 6.19 -2.91 -0.02 4.62 16 39 H 0.29 14.40 8.31 -92.70 -0.77 13.63 16 40 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.07 1.25 8.13 -2.39 -0.02 1.23 16 42 H 0.06 1.17 8.13 -2.39 -0.02 1.15 16 Total: -1.00 -68.69 363.81 6.37 -62.33 By element: Atomic # 1 Polarization: 44.24 SS G_CDS: 0.56 Total: 44.80 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: 6.90 Total: -3.94 kcal Atomic # 7 Polarization: -90.21 SS G_CDS: -2.52 Total: -92.72 kcal Atomic # 8 Polarization: -54.64 SS G_CDS: -0.26 Total: -54.91 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.68 Total: 44.45 kcal Total: -68.69 6.37 -62.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001468875988.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.479 kcal (2) G-P(sol) polarization free energy of solvation -68.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds