Wall clock time and date at job start Sat Apr 11 2020 05:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31343 * 1 3 3 Si 1.86798 * 120.00187 * 2 1 4 4 H 1.48502 * 109.47541 * 245.01697 * 3 2 1 5 5 H 1.48494 * 109.47106 * 5.02031 * 3 2 1 6 6 H 1.48504 * 109.46798 * 125.01909 * 3 2 1 7 7 C 1.39016 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00272 * 183.60764 * 7 2 1 9 9 N 1.36895 * 119.99698 * 3.60856 * 7 2 1 10 10 C 1.38210 * 125.62152 * 132.88061 * 9 7 2 11 11 C 1.46886 * 125.43326 * 359.97438 * 10 9 7 12 12 O 1.21672 * 119.99561 * 174.19735 * 11 10 9 13 13 N 1.34771 * 120.00341 * 354.18964 * 11 10 9 14 14 C 1.46505 * 120.00278 * 184.80835 * 13 11 10 15 15 C 1.52998 * 109.47282 * 184.90174 * 14 13 11 16 16 H 1.09007 * 109.46972 * 54.76411 * 15 14 13 17 17 O 1.42895 * 109.47269 * 294.76820 * 15 14 13 18 18 C 1.50702 * 109.47101 * 174.76500 * 15 14 13 19 19 C 1.34664 * 126.58810 * 85.02597 * 18 15 14 20 20 N 1.34132 * 108.01639 * 179.97438 * 19 18 15 21 21 C 1.30498 * 109.25795 * 359.97438 * 20 19 18 22 22 N 1.35044 * 108.70035 * 359.76933 * 21 20 19 23 23 H 0.96993 * 126.39957 * 180.26911 * 22 21 20 24 24 C 1.36120 * 109.12721 * 180.23884 * 10 9 7 25 25 C 1.41705 * 107.74941 * 359.57919 * 24 10 9 26 26 C 1.40016 * 133.35343 * 180.10837 * 25 24 10 27 27 C 1.36584 * 119.83241 * 180.33190 * 26 25 24 28 28 C 1.38861 * 120.59632 * 0.02562 * 27 26 25 29 29 C 1.37841 * 120.63585 * 0.02562 * 28 27 26 30 30 C 1.37841 * 125.61623 * 312.84802 * 9 7 2 31 31 H 0.97000 * 119.99660 * 4.99981 * 1 2 3 32 32 H 0.97006 * 119.99944 * 4.80499 * 13 11 10 33 33 H 1.09002 * 109.46405 * 304.90238 * 14 13 11 34 34 H 1.08993 * 109.46952 * 64.89960 * 14 13 11 35 35 H 0.96706 * 113.99708 * 300.00070 * 17 15 14 36 36 H 1.07994 * 125.99188 * 359.96192 * 19 18 15 37 37 H 1.07998 * 125.64811 * 180.02562 * 21 20 19 38 38 H 1.07995 * 126.12679 * 179.70016 * 24 10 9 39 39 H 1.07994 * 120.08886 * 0.35863 * 26 25 24 40 40 H 1.07992 * 119.70182 * 180.02562 * 27 26 25 41 41 H 1.07996 * 119.67719 * 180.02562 * 28 27 26 42 42 H 1.07997 * 120.09616 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 3.0071 1.7508 -1.2691 5 1 1.2872 2.7437 0.1225 6 1 3.1908 1.6445 1.1467 7 6 2.0085 -1.2039 -0.0005 8 1 3.0868 -1.2049 0.0583 9 7 1.3260 -2.3882 -0.0757 10 6 1.6309 -3.4410 -0.9176 11 6 2.7418 -3.4690 -1.8783 12 8 2.9852 -4.4878 -2.4972 13 7 3.4912 -2.3661 -2.0742 14 6 4.5306 -2.3607 -3.1067 15 6 5.3086 -1.0449 -3.0402 16 1 5.6935 -0.9010 -2.0306 17 8 4.4410 0.0390 -3.3782 18 6 6.4577 -1.0911 -4.0142 19 6 6.4110 -0.7889 -5.3256 20 7 7.6409 -0.9564 -5.8340 21 6 8.4480 -1.3503 -4.8872 22 7 7.7509 -1.4419 -3.7342 23 1 8.1007 -1.7083 -2.8697 24 6 0.7341 -4.4455 -0.7186 25 6 -0.1682 -4.0254 0.2901 26 6 -1.2759 -4.6266 0.8999 27 6 -1.9701 -3.9523 1.8637 28 6 -1.5880 -2.6731 2.2456 29 6 -0.5017 -2.0600 1.6590 30 6 0.2217 -2.7274 0.6763 31 1 -0.4850 0.8369 -0.0732 32 1 3.3424 -1.5759 -1.5316 33 1 5.2123 -3.1947 -2.9402 34 1 4.0679 -2.4600 -4.0885 35 1 4.0609 -0.0232 -4.2652 36 1 5.5366 -0.4682 -5.8723 37 1 9.5001 -1.5635 -5.0053 38 1 0.7149 -5.3935 -1.2354 39 1 -1.5804 -5.6212 0.6094 40 1 -2.8239 -4.4182 2.3330 41 1 -2.1473 -2.1537 3.0096 42 1 -0.2124 -1.0647 1.9624 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001471846979.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:24 Heat of formation + Delta-G solvation = 36.860142 kcal Electronic energy + Delta-G solvation = -29021.994013 eV Core-core repulsion = 24968.565612 eV Total energy + Delta-G solvation = -4053.428401 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.31436 -40.50198 -38.77079 -37.37007 -35.91861 -34.13097 -33.49891 -32.79180 -30.87326 -30.65438 -29.12641 -28.40358 -27.29457 -25.07144 -23.99209 -22.25764 -21.88900 -21.00783 -20.91178 -20.09775 -19.39348 -18.65574 -18.22175 -16.67922 -16.34679 -15.90768 -15.61827 -15.24376 -14.94784 -14.85575 -14.64050 -14.57504 -14.10221 -13.92761 -13.73684 -13.51379 -13.27562 -13.03648 -12.87806 -12.54495 -12.20269 -11.92514 -11.80872 -11.65117 -11.52063 -11.11019 -10.77288 -10.66088 -10.62611 -10.24675 -10.20425 -10.18933 -9.75784 -9.49191 -9.27023 -8.68940 -8.64546 -8.57890 -7.19984 -6.86289 -6.58907 -4.75594 1.73342 1.83575 2.78056 2.80344 2.92209 2.92970 2.98092 3.03375 3.12600 3.64567 3.71697 4.22735 4.30389 4.39576 4.53553 4.56519 4.68710 4.75545 4.79882 5.07900 5.15297 5.33431 5.56622 5.62393 5.80557 5.91224 5.98463 6.04350 6.16923 6.42675 6.44119 6.60528 6.69846 6.78898 6.88560 6.92764 7.08611 7.11662 7.14530 7.43316 7.45794 7.58604 7.66950 7.79522 7.91562 7.93486 8.16101 8.31669 8.63476 8.89712 9.24130 10.10638 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015026 B = 0.003479 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.935472 B = 8046.239611 C = 9576.150480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.064 3.936 3 Si 0.918 3.082 4 H -0.249 1.249 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.375 4.375 8 H 0.104 0.896 9 N -0.263 5.263 10 C -0.020 4.020 11 C 0.597 3.403 12 O -0.559 6.559 13 N -0.726 5.726 14 C 0.096 3.904 15 C 0.175 3.825 16 H 0.110 0.890 17 O -0.535 6.535 18 C -0.051 4.051 19 C -0.011 4.011 20 N -0.493 5.493 21 C 0.187 3.813 22 N -0.560 5.560 23 H 0.421 0.579 24 C -0.163 4.163 25 C -0.136 4.136 26 C -0.089 4.089 27 C -0.159 4.159 28 C -0.151 4.151 29 C -0.046 4.046 30 C 0.109 3.891 31 H 0.284 0.716 32 H 0.420 0.580 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.380 0.620 36 H 0.170 0.830 37 H 0.209 0.791 38 H 0.132 0.868 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.811 1.065 -2.469 10.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.150 4.150 3 Si 0.741 3.259 4 H -0.173 1.173 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.502 4.502 8 H 0.121 0.879 9 N 0.072 4.928 10 C -0.135 4.135 11 C 0.387 3.613 12 O -0.439 6.439 13 N -0.387 5.387 14 C -0.030 4.030 15 C 0.113 3.887 16 H 0.128 0.872 17 O -0.339 6.339 18 C -0.167 4.167 19 C -0.159 4.159 20 N -0.212 5.212 21 C -0.097 4.097 22 N -0.165 5.165 23 H 0.259 0.741 24 C -0.191 4.191 25 C -0.141 4.141 26 C -0.108 4.108 27 C -0.178 4.178 28 C -0.172 4.172 29 C -0.065 4.065 30 C -0.006 4.006 31 H 0.095 0.905 32 H 0.267 0.733 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.229 0.771 36 H 0.187 0.813 37 H 0.226 0.774 38 H 0.149 0.851 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.377 1.237 -3.154 10.916 hybrid contribution 0.085 0.768 0.801 1.113 sum 10.462 2.005 -2.354 10.910 Atomic orbital electron populations 1.69937 1.06315 1.29717 1.38748 1.25696 0.95685 1.00398 0.93249 0.86093 0.79662 0.79556 0.80633 1.17298 1.20109 1.19103 1.19407 0.91895 0.81596 1.57295 0.87895 1.39924 1.20132 1.10187 1.22517 1.20052 1.01072 0.93012 0.99338 1.17281 0.80481 0.82515 0.81044 1.90722 1.70638 1.32065 1.50472 1.46616 1.35657 1.17992 1.38436 1.21872 0.91182 0.96632 0.93288 1.20249 0.85359 0.86991 0.96100 0.87220 1.86735 1.63266 1.45426 1.38465 1.21915 0.86749 1.09967 0.98104 1.22035 0.96466 1.06268 0.91169 1.70294 1.01685 1.18099 1.31129 1.25036 0.99596 1.04175 0.80882 1.43227 1.08467 1.52264 1.12521 0.74089 1.20391 0.97026 0.99216 1.02460 1.18052 0.99169 0.95301 1.01538 1.20038 0.95089 0.98578 0.97132 1.20278 1.00980 0.96003 1.00527 1.20593 0.98525 0.95849 1.02246 1.20177 0.93956 0.98257 0.94135 1.18319 0.93065 0.93114 0.96113 0.90510 0.73289 0.90890 0.91177 0.77148 0.81278 0.77423 0.85055 0.87838 0.87998 0.87752 0.86155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -19.80 10.14 55.50 0.56 -19.24 16 2 C 0.06 1.45 5.13 -17.47 -0.09 1.36 16 3 Si 0.92 17.30 29.56 -169.99 -5.02 12.27 16 4 H -0.25 -4.65 7.11 56.52 0.40 -4.25 16 5 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 6 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 7 C -0.37 -8.68 7.64 -15.00 -0.11 -8.80 16 8 H 0.10 2.22 6.47 -52.49 -0.34 1.88 16 9 N -0.26 -6.44 2.83 -56.08 -0.16 -6.60 16 10 C -0.02 -0.48 6.77 -82.25 -0.56 -1.04 16 11 C 0.60 13.06 7.77 -12.76 -0.10 12.96 16 12 O -0.56 -13.02 16.83 5.21 0.09 -12.93 16 13 N -0.73 -13.27 5.44 -61.55 -0.34 -13.61 16 14 C 0.10 1.36 5.32 -4.04 -0.02 1.34 16 15 C 0.17 2.07 3.54 -27.88 -0.10 1.97 16 16 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 17 O -0.53 -6.99 13.13 -35.23 -0.46 -7.45 16 18 C -0.05 -0.55 6.30 -81.60 -0.51 -1.07 16 19 C -0.01 -0.13 11.25 -17.81 -0.20 -0.33 16 20 N -0.49 -6.12 11.25 -14.67 -0.17 -6.28 16 21 C 0.19 1.69 13.04 -90.38 -1.18 0.51 16 22 N -0.56 -4.77 6.15 -10.30 -0.06 -4.83 16 23 H 0.42 2.31 8.96 -40.82 -0.37 1.94 16 24 C -0.16 -3.79 10.55 -39.02 -0.41 -4.20 16 25 C -0.14 -3.18 6.16 -106.89 -0.66 -3.84 16 26 C -0.09 -1.83 10.06 -39.51 -0.40 -2.23 16 27 C -0.16 -3.05 9.97 -39.95 -0.40 -3.45 16 28 C -0.15 -3.06 10.02 -39.50 -0.40 -3.46 16 29 C -0.05 -1.05 8.47 -39.41 -0.33 -1.39 16 30 C 0.11 2.68 6.04 -83.83 -0.51 2.17 16 31 H 0.28 6.46 8.31 -40.82 -0.34 6.12 16 32 H 0.42 7.94 4.31 -40.82 -0.18 7.76 16 33 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.38 3.74 8.24 45.56 0.38 4.11 16 36 H 0.17 1.67 7.60 -52.49 -0.40 1.27 16 37 H 0.21 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.13 2.82 8.06 -52.49 -0.42 2.39 16 39 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 40 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.10 1.82 8.06 -52.49 -0.42 1.39 16 42 H 0.12 2.84 6.58 -52.49 -0.35 2.50 16 LS Contribution 359.82 15.07 5.42 5.42 Total: -1.00 -31.94 359.82 -9.88 -41.81 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: -3.77 Total: 20.91 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -5.98 Total: -9.47 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: -0.16 Total: -50.56 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.37 Total: -20.39 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.02 Total: 12.27 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.94 -9.88 -41.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471846979.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.675 kcal (2) G-P(sol) polarization free energy of solvation -31.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds