Wall clock time and date at job start Sat Apr 11 2020 05:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31350 * 1 3 3 Si 1.86796 * 119.99880 * 2 1 4 4 H 1.48493 * 109.47251 * 5.00372 * 3 2 1 5 5 H 1.48496 * 109.47321 * 125.00570 * 3 2 1 6 6 H 1.48507 * 109.47031 * 245.00365 * 3 2 1 7 7 C 1.39016 * 119.99857 * 179.72291 * 2 1 3 8 8 H 1.07995 * 119.99659 * 157.96679 * 7 2 1 9 9 N 1.36887 * 120.00094 * 337.97550 * 7 2 1 10 10 C 1.38207 * 125.62246 * 139.49792 * 9 7 2 11 11 C 1.46893 * 125.43734 * 0.02562 * 10 9 7 12 12 O 1.21662 * 120.00259 * 173.47043 * 11 10 9 13 13 N 1.34777 * 119.99729 * 353.46488 * 11 10 9 14 14 C 1.46494 * 119.99946 * 186.11406 * 13 11 10 15 15 C 1.53005 * 109.47433 * 184.95090 * 14 13 11 16 16 H 1.09001 * 109.46856 * 301.89709 * 15 14 13 17 17 O 1.42902 * 109.46680 * 61.89033 * 15 14 13 18 18 C 1.50695 * 109.47580 * 181.88988 * 15 14 13 19 19 C 1.34665 * 126.59093 * 274.69353 * 18 15 14 20 20 N 1.34140 * 108.02092 * 179.87069 * 19 18 15 21 21 C 1.30496 * 109.24844 * 0.39923 * 20 19 18 22 22 N 1.35038 * 108.70796 * 359.74860 * 21 20 19 23 23 H 0.96998 * 126.40249 * 179.97438 * 22 21 20 24 24 C 1.36124 * 109.12878 * 179.88029 * 10 9 7 25 25 C 1.41702 * 107.74676 * 0.37184 * 24 10 9 26 26 C 1.40021 * 133.35193 * 179.81527 * 25 24 10 27 27 C 1.36576 * 119.83138 * 179.97438 * 26 25 24 28 28 C 1.38850 * 120.60310 * 359.97438 * 27 26 25 29 29 C 1.37847 * 120.62962 * 359.97438 * 28 27 26 30 30 C 1.37844 * 125.61811 * 319.79929 * 9 7 2 31 31 H 0.97002 * 120.00106 * 176.89739 * 1 2 3 32 32 H 0.97003 * 119.99947 * 6.11724 * 13 11 10 33 33 H 1.08998 * 109.47671 * 304.95453 * 14 13 11 34 34 H 1.09002 * 109.47426 * 64.95294 * 14 13 11 35 35 H 0.96703 * 114.00133 * 60.00040 * 17 15 14 36 36 H 1.08001 * 125.99389 * 0.02562 * 19 18 15 37 37 H 1.08005 * 125.64441 * 179.73366 * 21 20 19 38 38 H 1.07994 * 126.12609 * 180.14218 * 24 10 9 39 39 H 1.08004 * 120.08304 * 359.94731 * 26 25 24 40 40 H 1.08005 * 119.69722 * 180.02562 * 27 26 25 41 41 H 1.07994 * 119.68584 * 179.97438 * 28 27 26 42 42 H 1.08006 * 120.09129 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6177 0.0000 4 1 1.2871 2.7437 0.1221 5 1 3.1905 1.6449 1.1467 6 1 3.0073 1.7506 -1.2690 7 6 2.0086 -1.2039 0.0058 8 1 3.0293 -1.2397 -0.3449 9 7 1.3990 -2.3440 0.4559 10 6 1.5164 -3.5979 -0.1132 11 6 2.3176 -3.9227 -1.3008 12 8 2.4468 -5.0811 -1.6494 13 7 2.9096 -2.9372 -2.0043 14 6 3.5957 -3.2451 -3.2615 15 6 4.2809 -1.9837 -3.7909 16 1 3.5377 -1.1991 -3.9332 17 8 5.2629 -1.5446 -2.8502 18 6 4.9476 -2.2889 -5.1074 19 6 6.1780 -2.8074 -5.2830 20 7 6.3937 -2.9270 -6.6015 21 6 5.3469 -2.4944 -7.2496 22 7 4.4212 -2.0871 -6.3548 23 1 3.5468 -1.7197 -6.5580 24 6 0.7737 -4.4848 0.6043 25 6 0.1543 -3.7734 1.6618 26 6 -0.7093 -4.1503 2.6976 27 6 -1.1502 -3.2142 3.5890 28 6 -0.7495 -1.8893 3.4790 29 6 0.1009 -1.4944 2.4685 30 6 0.5623 -2.4294 1.5480 31 1 -0.4850 -0.8388 -0.0455 32 1 2.8814 -2.0241 -1.6782 33 1 4.3434 -4.0189 -3.0874 34 1 2.8704 -3.5992 -3.9941 35 1 5.9573 -2.1942 -2.6744 36 1 6.8690 -3.0815 -4.4995 37 1 5.2390 -2.4665 -8.3239 38 1 0.6715 -5.5406 0.4015 39 1 -1.0263 -5.1785 2.7910 40 1 -1.8159 -3.5074 4.3873 41 1 -1.1075 -1.1613 4.1918 42 1 0.4067 -0.4614 2.3909 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001471846980.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:26 Heat of formation + Delta-G solvation = 32.866381 kcal Electronic energy + Delta-G solvation = -28997.517253 eV Core-core repulsion = 24943.915669 eV Total energy + Delta-G solvation = -4053.601584 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.32292 -40.74437 -38.87480 -37.41968 -36.13915 -34.26068 -33.66506 -32.80111 -30.89119 -30.65430 -29.26760 -28.46097 -27.38790 -24.89704 -24.06511 -22.37085 -21.89431 -21.12004 -20.93365 -20.27188 -19.56965 -18.70982 -18.60622 -16.79367 -16.38147 -15.92800 -15.76754 -15.30262 -15.07827 -15.03555 -14.66242 -14.39515 -14.14398 -14.00760 -13.82520 -13.66415 -13.50159 -13.22040 -13.12142 -12.54025 -12.29897 -12.15825 -11.89238 -11.69336 -11.24647 -10.94304 -10.69668 -10.62360 -10.50011 -10.42062 -10.25225 -10.22078 -9.96725 -9.56899 -9.23160 -8.88819 -8.69947 -8.64878 -7.62087 -7.13275 -6.86165 -4.75008 1.64876 1.72505 2.56008 2.79956 2.91142 2.93416 3.02532 3.06865 3.23781 3.59175 3.75667 4.10415 4.25800 4.28514 4.39247 4.57265 4.67037 4.72594 4.81172 4.83758 5.13848 5.31777 5.49673 5.57284 5.66326 5.78868 5.80310 5.99860 6.03178 6.24597 6.34928 6.43027 6.48922 6.70749 6.80441 6.85557 6.92373 7.08122 7.15778 7.33173 7.38212 7.42611 7.49150 7.71440 7.73816 7.78617 8.04720 8.14204 8.56397 8.80628 9.01520 9.96507 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014443 B = 0.003443 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.172697 B = 8131.660231 C = 9624.274411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.031 3.969 3 Si 1.073 2.927 4 H -0.271 1.271 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.451 4.451 8 H 0.107 0.893 9 N -0.261 5.261 10 C -0.025 4.025 11 C 0.597 3.403 12 O -0.558 6.558 13 N -0.725 5.725 14 C 0.095 3.905 15 C 0.175 3.825 16 H 0.112 0.888 17 O -0.536 6.536 18 C -0.051 4.051 19 C -0.011 4.011 20 N -0.493 5.493 21 C 0.188 3.812 22 N -0.560 5.560 23 H 0.422 0.578 24 C -0.165 4.165 25 C -0.128 4.128 26 C -0.081 4.081 27 C -0.159 4.159 28 C -0.135 4.135 29 C -0.081 4.081 30 C 0.066 3.934 31 H 0.291 0.709 32 H 0.421 0.579 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.380 0.620 36 H 0.170 0.830 37 H 0.210 0.790 38 H 0.134 0.866 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.679 0.552 -7.291 8.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.187 4.187 3 Si 0.895 3.105 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.578 4.578 8 H 0.125 0.875 9 N 0.075 4.925 10 C -0.140 4.140 11 C 0.386 3.614 12 O -0.437 6.437 13 N -0.387 5.387 14 C -0.030 4.030 15 C 0.114 3.886 16 H 0.130 0.870 17 O -0.341 6.341 18 C -0.168 4.168 19 C -0.159 4.159 20 N -0.212 5.212 21 C -0.096 4.096 22 N -0.164 5.164 23 H 0.260 0.740 24 C -0.193 4.193 25 C -0.133 4.133 26 C -0.100 4.100 27 C -0.178 4.178 28 C -0.156 4.156 29 C -0.100 4.100 30 C -0.049 4.049 31 H 0.103 0.897 32 H 0.269 0.731 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.228 0.772 36 H 0.187 0.813 37 H 0.226 0.774 38 H 0.151 0.849 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.127 1.927 -8.054 9.740 hybrid contribution -0.745 -1.301 0.135 1.505 sum 4.382 0.627 -7.919 9.072 Atomic orbital electron populations 1.70636 1.07114 1.33105 1.33112 1.26845 0.95985 1.02966 0.92876 0.83442 0.75305 0.73421 0.78301 1.19580 1.19862 1.19855 1.20514 0.99762 0.86526 1.51025 0.87545 1.40161 1.30824 1.05525 1.15989 1.20112 1.07652 0.87455 0.98754 1.17231 0.77903 0.84513 0.81750 1.90725 1.62849 1.19668 1.70480 1.46643 1.55467 1.13666 1.22888 1.21873 0.97184 0.96518 0.87427 1.20247 0.89502 0.96576 0.82286 0.87007 1.86696 1.40007 1.45804 1.61555 1.21889 0.97738 1.09666 0.87460 1.22028 0.95327 1.04696 0.93888 1.70300 1.25411 1.20602 1.04901 1.25041 0.85745 1.01564 0.97285 1.43234 1.17646 1.49418 1.06142 0.74027 1.20391 1.02797 0.98238 0.97872 1.17995 1.03350 0.93030 0.98962 1.20125 0.97354 0.98309 0.94195 1.20334 1.03414 0.93593 1.00509 1.20605 1.00135 0.95812 0.99032 1.20201 0.98048 0.98169 0.93623 1.18396 1.00504 0.94695 0.91288 0.89680 0.73149 0.90687 0.91426 0.77200 0.81299 0.77397 0.84852 0.87456 0.87549 0.87214 0.86391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.18 12.09 55.50 0.67 -19.51 16 2 C 0.03 0.70 4.25 -17.47 -0.07 0.63 16 3 Si 1.07 20.01 29.98 -169.99 -5.10 14.91 16 4 H -0.27 -5.14 7.11 56.52 0.40 -4.73 16 5 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 6 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16 7 C -0.45 -10.48 7.88 -15.01 -0.12 -10.60 16 8 H 0.11 2.36 6.15 -52.49 -0.32 2.04 16 9 N -0.26 -6.30 2.58 -56.08 -0.14 -6.45 16 10 C -0.02 -0.59 6.77 -82.25 -0.56 -1.14 16 11 C 0.60 13.07 7.76 -12.76 -0.10 12.97 16 12 O -0.56 -13.00 16.83 5.22 0.09 -12.92 16 13 N -0.72 -13.33 5.39 -61.55 -0.33 -13.66 16 14 C 0.10 1.37 5.34 -4.04 -0.02 1.35 16 15 C 0.18 2.09 3.56 -27.88 -0.10 1.99 16 16 H 0.11 1.34 8.14 -51.93 -0.42 0.91 16 17 O -0.54 -6.70 13.10 -35.23 -0.46 -7.16 16 18 C -0.05 -0.56 6.30 -81.60 -0.51 -1.07 16 19 C -0.01 -0.13 11.25 -17.81 -0.20 -0.33 16 20 N -0.49 -6.12 11.25 -14.66 -0.16 -6.28 16 21 C 0.19 1.71 13.04 -90.38 -1.18 0.53 16 22 N -0.56 -4.88 6.15 -10.30 -0.06 -4.94 16 23 H 0.42 2.46 8.96 -40.82 -0.37 2.10 16 24 C -0.17 -3.77 10.55 -39.02 -0.41 -4.19 16 25 C -0.13 -2.92 6.16 -106.89 -0.66 -3.58 16 26 C -0.08 -1.59 10.06 -39.51 -0.40 -1.99 16 27 C -0.16 -2.93 9.97 -39.96 -0.40 -3.33 16 28 C -0.14 -2.64 10.02 -39.50 -0.40 -3.03 16 29 C -0.08 -1.81 8.60 -39.41 -0.34 -2.15 16 30 C 0.07 1.58 5.46 -83.83 -0.46 1.12 16 31 H 0.29 7.68 7.01 -40.82 -0.29 7.40 16 32 H 0.42 8.04 4.17 -40.82 -0.17 7.87 16 33 H 0.07 1.08 8.09 -51.93 -0.42 0.66 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.38 3.49 8.23 45.56 0.38 3.86 16 36 H 0.17 1.64 7.60 -52.49 -0.40 1.24 16 37 H 0.21 1.02 8.06 -52.48 -0.42 0.60 16 38 H 0.13 2.81 8.06 -52.49 -0.42 2.39 16 39 H 0.11 1.81 8.06 -52.48 -0.42 1.39 16 40 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 41 H 0.11 1.83 8.06 -52.49 -0.42 1.40 16 42 H 0.12 2.73 6.71 -52.48 -0.35 2.37 16 LS Contribution 359.15 15.07 5.41 5.41 Total: -1.00 -31.46 359.15 -9.71 -41.17 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: -3.70 Total: 22.26 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -5.92 Total: -12.83 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.03 Total: -50.84 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.37 Total: -20.08 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.10 Total: 14.91 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.46 -9.71 -41.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471846980.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.032 kcal (2) G-P(sol) polarization free energy of solvation -31.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds