Wall clock time and date at job start Sat Apr 11 2020 05:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 110.63605 * 2 1 4 4 C 1.54317 * 110.72227 * 123.14218 * 2 1 3 5 5 N 1.47022 * 107.27411 * 140.73585 * 4 2 1 6 6 C 1.34773 * 125.65187 * 181.02069 * 5 4 2 7 7 O 1.21283 * 120.00144 * 180.02562 * 6 5 4 8 8 C 1.50705 * 119.99721 * 0.02657 * 6 5 4 9 9 S 1.81000 * 109.46942 * 180.02562 * 8 6 5 10 10 C 1.76195 * 100.00017 * 180.02562 * 9 8 6 11 11 H 1.08004 * 120.00294 * 359.97438 * 10 9 8 12 12 C 1.38802 * 120.00153 * 180.02562 * 10 9 8 13 13 N 1.31632 * 120.00093 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 120.00020 * 359.97438 * 12 10 9 15 15 H 1.48506 * 109.47297 * 90.00077 * 14 12 10 16 16 H 1.48503 * 109.47261 * 330.00257 * 14 12 10 17 17 H 1.48500 * 109.47454 * 210.00251 * 14 12 10 18 18 C 1.47431 * 108.70107 * 1.28941 * 5 4 2 19 19 C 1.55132 * 104.71955 * 335.55038 * 18 5 4 20 20 H 1.08995 * 111.22358 * 279.18199 * 19 18 5 21 21 N 1.46901 * 110.90299 * 155.27732 * 19 18 5 22 22 C 1.46899 * 110.99938 * 92.97953 * 21 19 18 23 23 C 1.52999 * 109.46865 * 180.02562 * 22 21 19 24 24 C 1.53004 * 109.46976 * 180.02562 * 23 22 21 25 25 F 1.39893 * 109.47488 * 59.99559 * 24 23 22 26 26 F 1.39901 * 109.47407 * 179.97438 * 24 23 22 27 27 F 1.39908 * 109.46771 * 299.99644 * 24 23 22 28 28 H 1.08994 * 109.47398 * 298.30561 * 1 2 3 29 29 H 1.08997 * 109.47267 * 58.31524 * 1 2 3 30 30 H 1.09003 * 109.46527 * 178.31276 * 1 2 3 31 31 H 1.09003 * 109.88586 * 21.31775 * 4 2 1 32 32 H 1.09001 * 110.01231 * 260.22638 * 4 2 1 33 33 H 1.08997 * 109.46935 * 60.00104 * 8 6 5 34 34 H 1.09000 * 109.47082 * 299.99666 * 8 6 5 35 35 H 0.97006 * 119.99745 * 179.97438 * 13 12 10 36 36 H 1.08993 * 110.36959 * 94.48214 * 18 5 4 37 37 H 1.09000 * 110.36536 * 216.80527 * 18 5 4 38 38 H 1.00902 * 110.99395 * 216.92859 * 21 19 18 39 39 H 1.09001 * 109.46912 * 299.99200 * 22 21 19 40 40 H 1.09000 * 109.47037 * 59.99831 * 22 21 19 41 41 H 1.08999 * 109.47155 * 299.99080 * 23 22 21 42 42 H 1.09000 * 109.47437 * 60.00069 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7891 1.2085 5 7 3.2471 -1.5460 0.7426 6 6 3.9958 -2.3766 1.4950 7 8 4.9441 -2.9511 1.0035 8 6 3.6547 -2.5913 2.9471 9 16 4.8362 -3.7505 3.6794 10 6 4.2184 -3.8164 5.3282 11 1 3.3515 -3.2342 5.6038 12 6 4.8464 -4.6158 6.2732 13 7 4.3852 -4.6646 7.5051 14 14 6.3462 -5.6223 5.7969 15 1 7.5743 -4.8188 6.0241 16 1 6.2570 -5.9951 4.3622 17 1 6.3999 -6.8534 6.6257 18 6 3.4708 -1.2411 -0.6824 19 6 2.0828 -0.7948 -1.2125 20 1 1.4512 -1.6542 -1.4370 21 7 2.2255 0.0723 -2.3897 22 6 2.1634 -0.7109 -3.6310 23 6 2.3159 0.2244 -4.8322 24 6 2.2506 -0.5912 -6.1250 25 9 1.0182 -1.2490 -6.1997 26 9 2.3894 0.2640 -7.2235 27 9 3.2840 -1.5343 -6.1341 28 1 -0.3634 0.4873 0.9047 29 1 -0.3633 0.5398 -0.8745 30 1 -0.3632 -1.0273 -0.0303 31 1 1.3141 -1.4754 1.5781 32 1 2.3706 -0.1011 2.0010 33 1 2.6472 -2.9996 3.0271 34 1 3.7042 -1.6398 3.4765 35 1 4.8239 -5.2236 8.1655 36 1 4.1970 -0.4353 -0.7885 37 1 3.8104 -2.1312 -1.2120 38 1 1.5289 0.8023 -2.3875 39 1 2.9691 -1.4450 -3.6380 40 1 1.2035 -1.2241 -3.6891 41 1 1.5105 0.9588 -4.8254 42 1 3.2759 0.7373 -4.7738 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484880639.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:31 Heat of formation + Delta-G solvation = -196.032337 kcal Electronic energy + Delta-G solvation = -26870.141846 eV Core-core repulsion = 22367.908929 eV Total energy + Delta-G solvation = -4502.232917 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.54509 -48.05298 -48.01245 -40.18763 -38.15312 -36.14128 -33.19413 -32.44204 -31.86402 -30.10703 -27.71501 -26.58009 -25.63574 -25.22154 -22.82987 -22.09781 -20.70671 -19.52289 -19.00532 -18.83530 -17.93481 -17.66907 -16.90730 -16.51784 -16.04630 -15.41080 -15.13976 -15.00613 -14.88811 -14.73279 -14.57755 -14.44050 -14.18085 -14.16122 -14.01882 -13.96528 -13.67423 -13.57974 -13.23916 -12.81579 -12.68434 -12.61309 -12.39210 -12.18567 -12.08677 -11.83648 -11.44323 -11.39881 -11.26511 -11.01019 -10.89198 -10.61631 -9.86298 -9.54768 -9.11504 -9.00633 -8.58596 -8.50310 -6.92674 -6.29401 -4.01204 2.24076 2.65031 2.93171 3.08814 3.26411 3.33430 3.46524 3.50792 3.56830 3.59306 3.84444 4.00792 4.22472 4.32784 4.34631 4.39048 4.52777 4.70592 4.76337 4.89626 4.98387 5.02384 5.09659 5.15245 5.18335 5.20964 5.26546 5.42106 5.52318 5.60465 5.65616 5.74722 5.77326 5.87116 6.00233 6.24274 6.45087 6.72240 7.55454 7.93609 8.40797 8.42293 9.16811 10.79713 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.021710 B = 0.002015 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.425754 B =13895.614195 C =14837.104677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 H 0.096 0.904 4 C 0.107 3.893 5 N -0.625 5.625 6 C 0.547 3.453 7 O -0.517 6.517 8 C -0.117 4.117 9 S -0.142 6.142 10 C -0.521 4.521 11 H 0.088 0.912 12 C 0.095 3.905 13 N -0.880 5.880 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.235 1.235 17 H -0.274 1.274 18 C 0.120 3.880 19 C 0.076 3.924 20 H 0.069 0.931 21 N -0.672 5.672 22 C 0.054 3.946 23 C -0.165 4.165 24 C 0.454 3.546 25 F -0.185 7.185 26 F -0.184 7.184 27 F -0.181 7.181 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.271 0.729 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.347 0.653 39 H 0.090 0.910 40 H 0.047 0.953 41 H 0.108 0.892 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.652 14.251 -25.497 31.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.125 4.125 3 H 0.114 0.886 4 C -0.017 4.017 5 N -0.363 5.363 6 C 0.336 3.664 7 O -0.391 6.391 8 C -0.268 4.268 9 S 0.084 5.916 10 C -0.668 4.668 11 H 0.106 0.894 12 C -0.113 4.113 13 N -0.517 5.517 14 Si 0.682 3.318 15 H -0.192 1.192 16 H -0.159 1.159 17 H -0.199 1.199 18 C -0.004 4.004 19 C -0.035 4.035 20 H 0.087 0.913 21 N -0.304 5.304 22 C -0.076 4.076 23 C -0.204 4.204 24 C 0.399 3.601 25 F -0.167 7.167 26 F -0.166 7.166 27 F -0.162 7.162 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.167 0.833 39 H 0.108 0.892 40 H 0.066 0.934 41 H 0.127 0.873 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.492 13.237 -25.982 30.371 hybrid contribution -1.520 -0.052 0.428 1.580 sum -10.012 13.185 -25.554 30.448 Atomic orbital electron populations 1.21810 0.93591 1.02506 1.02428 1.22414 0.96242 1.00140 0.93690 0.88599 1.22067 0.88074 0.94933 0.96639 1.48370 1.30818 1.46124 1.10976 1.19983 0.81518 0.77299 0.87621 1.90712 1.27824 1.47177 1.73373 1.23251 1.05011 1.04903 0.93613 1.84803 1.40026 1.56079 1.10689 1.22302 1.18567 1.33257 0.92694 0.89391 1.24715 0.97116 0.95517 0.93988 1.69940 1.40455 1.38832 1.02440 0.86733 0.83225 0.80492 0.81395 1.19187 1.15911 1.19942 1.22139 0.96085 1.01033 0.81138 1.22831 0.96416 0.94987 0.89243 0.91297 1.60242 1.55889 1.13917 1.00381 1.21981 1.02305 0.95341 0.87972 1.22833 1.08344 0.99240 0.89970 1.20513 0.73580 0.78978 0.86985 1.93193 1.44118 1.82508 1.96835 1.93201 1.95551 1.70234 1.57601 1.93219 1.59177 1.66984 1.96855 0.91528 0.92380 0.92124 0.90947 0.90844 0.88581 0.88572 0.91943 0.90505 0.90671 0.83338 0.89191 0.93441 0.87312 0.86110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.14 37.16 0.34 -0.41 16 2 C -0.11 -0.71 2.94 -88.79 -0.26 -0.97 16 3 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 4 C 0.11 1.04 6.08 -3.07 -0.02 1.03 16 5 N -0.63 -8.50 3.32 -170.38 -0.57 -9.07 16 6 C 0.55 10.11 7.87 -10.98 -0.09 10.02 16 7 O -0.52 -11.50 16.12 5.56 0.09 -11.41 16 8 C -0.12 -2.31 5.35 36.01 0.19 -2.12 16 9 S -0.14 -3.64 18.55 -107.50 -1.99 -5.63 16 10 C -0.52 -14.99 10.04 30.94 0.31 -14.68 16 11 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 12 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 13 N -0.88 -26.50 13.97 55.49 0.78 -25.72 16 14 Si 0.86 21.84 27.74 -169.99 -4.71 17.12 16 15 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 16 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 17 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 18 C 0.12 1.36 6.61 -2.40 -0.02 1.34 16 19 C 0.08 0.57 2.85 -65.44 -0.19 0.38 16 20 H 0.07 0.54 7.73 -51.93 -0.40 0.14 16 21 N -0.67 -3.75 6.41 -104.34 -0.67 -4.42 16 22 C 0.05 0.29 5.30 -3.83 -0.02 0.27 16 23 C -0.17 -0.67 5.52 -26.73 -0.15 -0.81 16 24 C 0.45 2.89 3.16 37.16 0.12 3.01 16 25 F -0.18 -1.37 16.80 2.25 0.04 -1.33 16 26 F -0.18 -1.34 17.32 2.25 0.04 -1.30 16 27 F -0.18 -1.47 16.80 2.25 0.04 -1.43 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 31 H 0.07 0.69 7.82 -51.93 -0.41 0.28 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 34 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 35 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.96 8.03 -51.93 -0.42 0.54 16 38 H 0.35 1.31 8.44 -39.29 -0.33 0.98 16 39 H 0.09 0.61 7.80 -51.93 -0.41 0.20 16 40 H 0.05 0.25 7.75 -51.93 -0.40 -0.15 16 41 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 373.65 15.07 5.63 5.63 Total: -1.00 -34.18 373.65 -7.37 -41.56 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -6.17 Total: -3.76 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 0.13 Total: -0.24 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: -0.46 Total: -39.21 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.09 Total: -11.41 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.11 Total: -4.06 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.71 Total: 17.12 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.18 -7.37 -41.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484880639.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.477 kcal (2) G-P(sol) polarization free energy of solvation -34.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds