Wall clock time and date at job start Sat Apr 11 2020 05:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46895 * 109.46904 * 2 1 4 4 C 1.46897 * 111.00212 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47499 * 179.97438 * 4 3 2 6 6 H 1.08996 * 110.38557 * 52.76932 * 5 4 3 7 7 C 1.54383 * 110.34350 * 290.53826 * 5 4 3 8 8 N 1.48150 * 104.61731 * 264.99473 * 7 5 4 9 9 C 1.34777 * 127.83781 * 140.39548 * 8 7 5 10 10 O 1.21287 * 119.99945 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99850 * 180.02562 * 9 8 7 12 12 S 1.81004 * 109.46870 * 180.02562 * 11 9 8 13 13 C 1.76201 * 99.99909 * 180.02562 * 12 11 9 14 14 H 1.08003 * 119.99985 * 359.97438 * 13 12 11 15 15 C 1.38796 * 119.99937 * 179.97438 * 13 12 11 16 16 N 1.31632 * 120.00200 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00021 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46828 * 60.00541 * 17 15 13 19 19 H 1.48498 * 109.47372 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47420 * 300.00677 * 17 15 13 21 21 C 1.48141 * 104.32380 * 320.41539 * 8 7 5 22 22 C 1.54286 * 110.34277 * 175.00124 * 5 4 3 23 23 H 1.09002 * 110.34478 * 0.02562 * 22 5 4 24 24 C 1.53002 * 110.34382 * 237.74436 * 22 5 4 25 25 F 1.39906 * 109.46909 * 59.99672 * 24 22 5 26 26 F 1.39897 * 109.47384 * 180.02562 * 24 22 5 27 27 F 1.39901 * 109.47063 * 300.00193 * 24 22 5 28 28 H 1.09006 * 109.47291 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47218 * 300.00020 * 1 2 3 30 30 H 1.08996 * 109.47506 * 59.99893 * 1 2 3 31 31 H 1.08989 * 109.46891 * 239.99814 * 2 1 3 32 32 H 1.09001 * 109.46794 * 119.99567 * 2 1 3 33 33 H 1.00904 * 111.00418 * 56.04437 * 3 2 1 34 34 H 1.09008 * 109.47217 * 59.99855 * 4 3 2 35 35 H 1.09006 * 109.47302 * 300.00251 * 4 3 2 36 36 H 1.09001 * 110.40730 * 23.77887 * 7 5 4 37 37 H 1.09003 * 110.40571 * 146.09742 * 7 5 4 38 38 H 1.08999 * 109.46797 * 299.99590 * 11 9 8 39 39 H 1.08998 * 109.47173 * 60.00156 * 11 9 8 40 40 H 0.97001 * 120.00392 * 179.97438 * 16 15 13 41 41 H 1.09006 * 110.41042 * 280.80266 * 21 8 7 42 42 H 1.09007 * 110.40752 * 158.37223 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4881 1.4243 -0.0006 5 6 3.9594 2.8798 -0.0012 6 1 3.4886 3.4317 0.8123 7 6 3.6410 3.5465 -1.3568 8 7 4.8866 3.4027 -2.1459 9 6 5.0061 3.1145 -3.4570 10 8 4.0140 2.9398 -4.1324 11 6 6.3725 3.0092 -4.0839 12 16 6.2009 2.6152 -5.8421 13 6 7.8989 2.5528 -6.3088 14 1 8.6682 2.7349 -5.5730 15 6 8.2477 2.2695 -7.6220 16 7 7.3100 2.0480 -8.5190 17 14 10.0477 2.2040 -8.1170 18 1 10.7402 1.1541 -7.3274 19 1 10.1521 1.8856 -9.5637 20 1 10.6819 3.5206 -7.8533 21 6 5.9710 3.6471 -1.1666 22 6 5.4957 2.9462 0.1242 23 1 5.9146 1.9418 0.1858 24 6 5.8942 3.7667 1.3526 25 9 5.3678 3.1694 2.5030 26 9 7.2890 3.8155 1.4484 27 9 5.3899 5.0658 1.2293 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6441 1.9013 0.7814 34 1 3.8647 0.9204 -0.8909 35 1 3.8654 0.9201 0.8891 36 1 2.8171 3.0306 -1.8499 37 1 3.3985 4.5997 -1.2148 38 1 6.8967 3.9585 -3.9741 39 1 6.9399 2.2214 -3.5883 40 1 7.5538 1.8503 -9.4368 41 1 6.0944 4.7165 -0.9951 42 1 6.9051 3.2072 -1.5162 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507454621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:46 Heat of formation + Delta-G solvation = -189.748674 kcal Electronic energy + Delta-G solvation = -28002.617627 eV Core-core repulsion = 23500.657190 eV Total energy + Delta-G solvation = -4501.960437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.45894 -47.93961 -47.91064 -40.12290 -37.94047 -36.37788 -32.88775 -32.44371 -31.30420 -29.90382 -28.34070 -25.95759 -25.58673 -25.03166 -22.75674 -22.26953 -20.73147 -19.63148 -18.81444 -18.48545 -18.00261 -17.62678 -16.68039 -16.29820 -15.59394 -15.24008 -15.18505 -14.91142 -14.81551 -14.78307 -14.63398 -14.34205 -14.26474 -14.08320 -14.03412 -13.94080 -13.51203 -13.22805 -13.05077 -12.64708 -12.57176 -12.19899 -12.18815 -11.92170 -11.85655 -11.69661 -11.53015 -11.25153 -11.08854 -11.05571 -11.04664 -10.78122 -9.84603 -9.48051 -9.07509 -8.79111 -8.69892 -8.26537 -6.52571 -6.23008 -3.94219 2.29363 2.82088 2.96957 3.22564 3.23023 3.27912 3.34561 3.39492 3.58155 3.60966 3.89204 4.18447 4.26150 4.32179 4.41788 4.66870 4.78401 4.88324 4.90025 4.96457 5.02319 5.12076 5.21512 5.24788 5.30200 5.39489 5.49390 5.54016 5.57405 5.72135 5.74060 5.84580 5.92309 5.92844 6.08092 6.21716 6.64094 7.04492 7.57231 7.59464 8.33324 8.48270 9.22111 10.84310 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.011175 B = 0.003065 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.998674 B = 9133.604044 C =10920.261023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 N -0.687 5.687 4 C 0.068 3.932 5 C -0.092 4.092 6 H 0.094 0.906 7 C 0.115 3.885 8 N -0.627 5.627 9 C 0.557 3.443 10 O -0.506 6.506 11 C -0.150 4.150 12 S -0.058 6.058 13 C -0.537 4.537 14 H 0.072 0.928 15 C 0.074 3.926 16 N -0.867 5.867 17 Si 0.919 3.081 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.274 1.274 21 C 0.110 3.890 22 C -0.152 4.152 23 H 0.128 0.872 24 C 0.462 3.538 25 F -0.182 7.182 26 F -0.179 7.179 27 F -0.178 7.178 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.028 0.972 33 H 0.339 0.661 34 H 0.082 0.918 35 H 0.035 0.965 36 H 0.105 0.895 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.269 0.731 41 H 0.083 0.917 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.864 0.527 24.425 25.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.074 4.074 3 N -0.318 5.318 4 C -0.062 4.062 5 C -0.112 4.112 6 H 0.112 0.888 7 C -0.008 4.008 8 N -0.364 5.364 9 C 0.346 3.654 10 O -0.379 6.379 11 C -0.300 4.300 12 S 0.169 5.831 13 C -0.685 4.685 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.502 5.502 17 Si 0.745 3.255 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.199 1.199 21 C -0.015 4.015 22 C -0.173 4.173 23 H 0.146 0.854 24 C 0.407 3.593 25 F -0.164 7.164 26 F -0.161 7.161 27 F -0.159 7.159 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.046 0.954 33 H 0.157 0.843 34 H 0.101 0.899 35 H 0.054 0.946 36 H 0.123 0.877 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.102 0.898 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.434 0.269 22.401 23.937 hybrid contribution 2.730 0.045 1.800 3.270 sum -5.704 0.314 24.201 24.866 Atomic orbital electron populations 1.21766 0.94759 1.01815 1.02489 1.21914 0.95869 0.88971 1.00674 1.60398 1.07283 1.14162 1.49966 1.21993 0.88270 0.94500 1.01395 1.22142 0.91115 0.98011 0.99900 0.88791 1.22296 0.89203 1.00342 0.88943 1.48953 1.07174 1.72434 1.07886 1.19992 0.91560 0.75006 0.78890 1.90737 1.39472 1.47894 1.59761 1.23538 0.95683 1.04995 1.05788 1.85425 1.10859 1.91699 0.95119 1.22817 0.91759 1.56140 0.97777 0.90958 1.24986 0.98656 0.94511 0.95352 1.70004 1.32676 1.44412 1.03147 0.86227 0.82951 0.78750 0.77593 1.19929 1.20800 1.19919 1.22249 0.92705 1.00517 0.85996 1.23539 0.99746 1.01621 0.92363 0.85401 1.20322 0.74844 0.78946 0.85174 1.93190 1.86429 1.83498 1.53243 1.93214 1.29807 1.96443 1.96615 1.93196 1.87154 1.39653 1.95946 0.92157 0.92958 0.91513 0.90675 0.95426 0.84280 0.89921 0.94646 0.87659 0.91055 0.89172 0.89265 0.92092 0.89845 0.88336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.17 37.16 0.38 -0.70 16 2 C 0.05 0.44 6.40 -3.83 -0.02 0.42 16 3 N -0.69 -5.79 6.10 -113.78 -0.69 -6.48 16 4 C 0.07 0.57 4.79 -3.83 -0.02 0.55 16 5 C -0.09 -0.76 2.52 -89.22 -0.23 -0.98 16 6 H 0.09 0.66 7.40 -51.93 -0.38 0.28 16 7 C 0.11 1.29 6.53 -2.41 -0.02 1.28 16 8 N -0.63 -8.48 3.32 -169.30 -0.56 -9.04 16 9 C 0.56 10.35 7.93 -10.99 -0.09 10.26 16 10 O -0.51 -11.47 16.13 5.55 0.09 -11.38 16 11 C -0.15 -2.97 5.13 36.01 0.18 -2.79 16 12 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 13 C -0.54 -15.11 9.50 30.94 0.29 -14.81 16 14 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 15 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 16 N -0.87 -25.97 13.22 55.49 0.73 -25.23 16 17 Si 0.92 21.22 29.55 -169.99 -5.02 16.19 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 C 0.11 1.09 6.25 -2.41 -0.02 1.08 16 22 C -0.15 -1.21 2.73 -89.22 -0.24 -1.46 16 23 H 0.13 0.88 7.71 -51.93 -0.40 0.48 16 24 C 0.46 3.84 2.53 37.16 0.09 3.94 16 25 F -0.18 -1.56 16.93 2.25 0.04 -1.52 16 26 F -0.18 -1.65 17.17 2.25 0.04 -1.61 16 27 F -0.18 -1.62 16.04 2.25 0.04 -1.58 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.70 8.14 -51.94 -0.42 0.28 16 32 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.34 2.33 8.73 -39.29 -0.34 1.99 16 34 H 0.08 0.88 8.13 -51.92 -0.42 0.45 16 35 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.11 1.41 7.31 -51.93 -0.38 1.03 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 39 H 0.09 1.62 7.95 -51.92 -0.41 1.21 16 40 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.08 0.77 7.21 -51.93 -0.37 0.40 16 42 H 0.10 0.93 7.30 -51.93 -0.38 0.55 16 LS Contribution 373.34 15.07 5.63 5.63 Total: -1.00 -33.31 373.34 -7.72 -41.04 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -6.02 Total: -1.05 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 0.23 Total: -1.20 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: -0.52 Total: -40.75 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.11 Total: -4.71 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.31 -7.72 -41.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507454621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.711 kcal (2) G-P(sol) polarization free energy of solvation -33.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds