Wall clock time and date at job start Sat Apr 11 2020 05:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46895 * 109.46904 * 2 1 4 4 C 1.46897 * 111.00212 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47499 * 179.97438 * 4 3 2 6 6 H 1.08996 * 110.38557 * 52.76932 * 5 4 3 7 7 C 1.54383 * 110.34350 * 290.53826 * 5 4 3 8 8 N 1.48150 * 104.61731 * 264.99473 * 7 5 4 9 9 C 1.34777 * 127.83781 * 140.39548 * 8 7 5 10 10 O 1.21287 * 119.99945 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99850 * 180.02562 * 9 8 7 12 12 S 1.81004 * 109.46870 * 180.02562 * 11 9 8 13 13 C 1.76201 * 99.99909 * 180.02562 * 12 11 9 14 14 H 1.08003 * 119.99985 * 359.97438 * 13 12 11 15 15 C 1.38796 * 119.99937 * 179.97438 * 13 12 11 16 16 N 1.31632 * 120.00200 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00021 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46828 * 60.00541 * 17 15 13 19 19 H 1.48498 * 109.47372 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47420 * 300.00677 * 17 15 13 21 21 C 1.48141 * 104.32380 * 320.41539 * 8 7 5 22 22 C 1.54286 * 110.34277 * 175.00124 * 5 4 3 23 23 H 1.09002 * 110.34478 * 0.02562 * 22 5 4 24 24 C 1.53002 * 110.34382 * 237.74436 * 22 5 4 25 25 F 1.39906 * 109.46909 * 59.99672 * 24 22 5 26 26 F 1.39897 * 109.47384 * 180.02562 * 24 22 5 27 27 F 1.39901 * 109.47063 * 300.00193 * 24 22 5 28 28 H 1.09006 * 109.47291 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47218 * 300.00020 * 1 2 3 30 30 H 1.08996 * 109.47506 * 59.99893 * 1 2 3 31 31 H 1.08989 * 109.46891 * 239.99814 * 2 1 3 32 32 H 1.09001 * 109.46794 * 119.99567 * 2 1 3 33 33 H 1.00904 * 111.00418 * 56.04437 * 3 2 1 34 34 H 1.09008 * 109.47217 * 59.99855 * 4 3 2 35 35 H 1.09006 * 109.47302 * 300.00251 * 4 3 2 36 36 H 1.09001 * 110.40730 * 23.77887 * 7 5 4 37 37 H 1.09003 * 110.40571 * 146.09742 * 7 5 4 38 38 H 1.08999 * 109.46797 * 299.99590 * 11 9 8 39 39 H 1.08998 * 109.47173 * 60.00156 * 11 9 8 40 40 H 0.97001 * 120.00392 * 179.97438 * 16 15 13 41 41 H 1.09006 * 110.41042 * 280.80266 * 21 8 7 42 42 H 1.09007 * 110.40752 * 158.37223 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4881 1.4243 -0.0006 5 6 3.9594 2.8798 -0.0012 6 1 3.4886 3.4317 0.8123 7 6 3.6410 3.5465 -1.3568 8 7 4.8866 3.4027 -2.1459 9 6 5.0061 3.1145 -3.4570 10 8 4.0140 2.9398 -4.1324 11 6 6.3725 3.0092 -4.0839 12 16 6.2009 2.6152 -5.8421 13 6 7.8989 2.5528 -6.3088 14 1 8.6682 2.7349 -5.5730 15 6 8.2477 2.2695 -7.6220 16 7 7.3100 2.0480 -8.5190 17 14 10.0477 2.2040 -8.1170 18 1 10.7402 1.1541 -7.3274 19 1 10.1521 1.8856 -9.5637 20 1 10.6819 3.5206 -7.8533 21 6 5.9710 3.6471 -1.1666 22 6 5.4957 2.9462 0.1242 23 1 5.9146 1.9418 0.1858 24 6 5.8942 3.7667 1.3526 25 9 5.3678 3.1694 2.5030 26 9 7.2890 3.8155 1.4484 27 9 5.3899 5.0658 1.2293 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6441 1.9013 0.7814 34 1 3.8647 0.9204 -0.8909 35 1 3.8654 0.9201 0.8891 36 1 2.8171 3.0306 -1.8499 37 1 3.3985 4.5997 -1.2148 38 1 6.8967 3.9585 -3.9741 39 1 6.9399 2.2214 -3.5883 40 1 7.5538 1.8503 -9.4368 41 1 6.0944 4.7165 -0.9951 42 1 6.9051 3.2072 -1.5162 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507454621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:45 Heat of formation + Delta-G solvation = -212.076740 kcal Electronic energy + Delta-G solvation = -28003.585844 eV Core-core repulsion = 23500.657190 eV Total energy + Delta-G solvation = -4502.928655 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.13226 -48.60556 -48.59399 -41.21542 -39.14298 -37.16869 -34.58048 -33.91287 -32.04390 -31.20035 -29.31165 -27.68192 -26.76699 -26.03707 -23.49210 -22.96272 -21.49914 -20.89328 -19.71328 -19.43997 -19.16115 -18.71395 -18.00607 -17.07417 -16.87475 -16.66143 -16.56557 -15.91656 -15.82443 -15.68424 -15.47544 -15.42150 -15.04044 -15.00142 -14.81241 -14.72447 -14.56589 -14.47465 -14.05488 -14.02357 -13.50216 -13.33390 -13.17051 -13.04299 -12.88578 -12.85763 -12.63865 -12.61205 -12.38573 -12.22090 -11.94236 -11.82165 -11.72544 -11.12279 -11.00769 -10.27861 -9.89963 -9.39134 -8.67141 -8.33869 -6.12468 1.21298 1.42848 1.44614 1.51079 1.54275 1.66162 2.04945 2.27757 2.65298 2.71484 2.86626 3.00324 3.22773 3.27022 3.52635 3.58416 3.72123 3.83742 3.94437 4.08865 4.23540 4.24351 4.26974 4.37144 4.41724 4.51918 4.58632 4.62957 4.66627 4.71718 4.89351 4.90372 4.98279 5.12824 5.22271 5.33296 5.42235 5.99095 6.20150 6.33174 6.49322 7.07120 7.07797 8.75064 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.011175 B = 0.003065 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.998674 B = 9133.604044 C =10920.261023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.055 3.945 3 N -0.699 5.699 4 C 0.072 3.928 5 C -0.079 4.079 6 H 0.115 0.885 7 C 0.112 3.888 8 N -0.618 5.618 9 C 0.557 3.443 10 O -0.559 6.559 11 C -0.123 4.123 12 S -0.149 6.149 13 C -0.546 4.546 14 H 0.084 0.916 15 C 0.014 3.986 16 N -0.911 5.911 17 Si 0.998 3.002 18 H -0.261 1.261 19 H -0.280 1.280 20 H -0.262 1.262 21 C 0.102 3.898 22 C -0.142 4.142 23 H 0.145 0.855 24 C 0.469 3.531 25 F -0.180 7.180 26 F -0.183 7.183 27 F -0.181 7.181 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.040 0.960 33 H 0.351 0.649 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.271 0.729 41 H 0.097 0.903 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.230 0.874 27.199 27.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.074 4.074 3 N -0.332 5.332 4 C -0.057 4.057 5 C -0.099 4.099 6 H 0.133 0.867 7 C -0.010 4.010 8 N -0.353 5.353 9 C 0.346 3.654 10 O -0.436 6.436 11 C -0.274 4.274 12 S 0.078 5.922 13 C -0.694 4.694 14 H 0.102 0.898 15 C -0.191 4.191 16 N -0.548 5.548 17 Si 0.819 3.181 18 H -0.186 1.186 19 H -0.205 1.205 20 H -0.187 1.187 21 C -0.021 4.021 22 C -0.163 4.163 23 H 0.163 0.837 24 C 0.414 3.586 25 F -0.162 7.162 26 F -0.164 7.164 27 F -0.163 7.163 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.170 0.830 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.080 0.920 41 H 0.115 0.885 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.792 0.635 25.255 26.160 hybrid contribution 2.147 -0.020 1.093 2.409 sum -4.645 0.614 26.348 26.761 Atomic orbital electron populations 1.21731 0.94105 1.02308 1.02281 1.21889 0.96409 0.88814 1.00279 1.60347 1.07395 1.14585 1.50854 1.21904 0.88399 0.94421 1.00991 1.22061 0.91542 0.97837 0.98445 0.86672 1.22449 0.87521 1.01240 0.89762 1.48774 1.09623 1.70153 1.06773 1.19678 0.90233 0.75146 0.80359 1.90718 1.40585 1.50755 1.61590 1.23341 0.97230 1.06373 1.00491 1.85622 1.12180 1.92359 1.02016 1.23165 0.91807 1.55973 0.98467 0.89798 1.26118 1.03930 0.93760 0.95256 1.70177 1.35378 1.45629 1.03585 0.85015 0.76383 0.79422 0.77254 1.18557 1.20494 1.18672 1.22537 0.91922 1.01851 0.85801 1.23461 0.99305 1.02242 0.91255 0.83704 1.20208 0.74605 0.78671 0.85080 1.93199 1.86378 1.83448 1.53140 1.93215 1.30144 1.96439 1.96627 1.93198 1.87171 1.39972 1.95954 0.91369 0.91690 0.93109 0.92640 0.94173 0.83014 0.92440 0.92801 0.90114 0.89697 0.87386 0.87160 0.91992 0.88459 0.87348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 10.17 71.98 0.73 -1.25 16 2 C 0.06 0.85 6.40 86.30 0.55 1.40 16 3 N -0.70 -11.00 6.10 -513.90 -3.13 -14.13 16 4 C 0.07 1.10 4.79 86.30 0.41 1.51 16 5 C -0.08 -1.11 2.52 -9.89 -0.02 -1.14 16 6 H 0.12 1.22 7.40 -2.39 -0.02 1.21 16 7 C 0.11 2.40 6.53 86.53 0.56 2.96 16 8 N -0.62 -16.01 3.32 -807.95 -2.68 -18.69 16 9 C 0.56 20.84 7.93 87.66 0.70 21.54 16 10 O -0.56 -26.41 16.13 -3.05 -0.05 -26.46 16 11 C -0.12 -4.85 5.13 71.24 0.37 -4.48 16 12 S -0.15 -8.24 20.57 -56.49 -1.16 -9.41 16 13 C -0.55 -30.90 9.50 67.95 0.65 -30.26 16 14 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 15 C 0.01 0.80 5.49 84.86 0.47 1.27 16 16 N -0.91 -55.84 13.22 21.65 0.29 -55.56 16 17 Si 1.00 43.20 29.55 68.60 2.03 45.23 16 18 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 19 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 21 C 0.10 1.75 6.25 86.53 0.54 2.29 16 22 C -0.14 -1.83 2.73 -9.89 -0.03 -1.86 16 23 H 0.15 1.47 7.71 -2.39 -0.02 1.46 16 24 C 0.47 6.25 2.53 71.98 0.18 6.43 16 25 F -0.18 -2.46 16.93 44.97 0.76 -1.69 16 26 F -0.18 -2.79 17.17 44.97 0.77 -2.02 16 27 F -0.18 -2.72 16.04 44.97 0.72 -2.00 16 28 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.35 4.10 8.73 -89.69 -0.78 3.32 16 34 H 0.06 1.19 8.13 -2.38 -0.02 1.17 16 35 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 36 H 0.08 2.19 7.31 -2.39 -0.02 2.18 16 37 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 38 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 39 H 0.11 3.85 7.95 -2.40 -0.02 3.83 16 40 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 41 H 0.10 1.49 7.21 -2.38 -0.02 1.47 16 42 H 0.11 1.70 7.30 -2.38 -0.02 1.69 16 Total: -1.00 -75.16 373.34 2.91 -72.24 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.26 Total: 14.06 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: 5.11 Total: -1.58 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -5.53 Total: -88.37 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.05 Total: -26.46 kcal Atomic # 9 Polarization: -7.96 SS G_CDS: 2.25 Total: -5.71 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: -8.24 SS G_CDS: -1.16 Total: -9.41 kcal Total: -75.16 2.91 -72.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507454621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.834 kcal (2) G-P(sol) polarization free energy of solvation -75.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds