Wall clock time and date at job start Sat Apr 11 2020 05:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34671 * 117.00154 * 2 1 4 4 O 1.21433 * 120.00541 * 359.97438 * 3 2 1 5 5 C 1.48079 * 119.99906 * 180.27657 * 3 2 1 6 6 C 1.39343 * 119.72345 * 179.72389 * 5 3 2 7 7 C 1.38589 * 119.05335 * 179.97438 * 6 5 3 8 8 C 1.38627 * 118.49296 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.32504 * 180.02562 * 8 7 6 10 10 C 1.50694 * 109.47004 * 85.09838 * 9 8 7 11 11 O 1.21281 * 120.00203 * 5.07126 * 10 9 8 12 12 N 1.34784 * 119.99972 * 185.07388 * 10 9 8 13 13 C 1.37133 * 119.99991 * 3.23199 * 12 10 9 14 14 H 1.08005 * 119.99588 * 305.63578 * 13 12 10 15 15 C 1.38887 * 120.00461 * 125.63612 * 13 12 10 16 16 N 1.31416 * 120.00236 * 181.33811 * 15 13 12 17 17 Si 1.86805 * 119.99694 * 1.34210 * 15 13 12 18 18 H 1.48497 * 109.47119 * 95.24593 * 17 15 13 19 19 H 1.48496 * 109.46922 * 215.24396 * 17 15 13 20 20 H 1.48498 * 109.47049 * 335.24301 * 17 15 13 21 21 C 1.39789 * 120.00011 * 183.23135 * 12 10 9 22 22 C 1.38967 * 120.07743 * 351.37795 * 21 12 10 23 23 C 1.38085 * 119.91992 * 179.79055 * 22 21 12 24 24 C 1.38309 * 120.07689 * 0.45820 * 23 22 21 25 25 C 1.38310 * 120.15870 * 359.79142 * 24 23 22 26 26 C 1.38085 * 120.07513 * 359.97438 * 25 24 23 27 27 C 1.38588 * 119.35077 * 359.97438 * 8 7 6 28 28 N 1.31497 * 120.91313 * 359.74497 * 27 8 7 29 29 H 1.08998 * 109.47106 * 59.99757 * 1 2 3 30 30 H 1.08992 * 109.47253 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46905 * 300.00175 * 1 2 3 32 32 H 1.08005 * 120.47463 * 359.95761 * 6 5 3 33 33 H 1.08005 * 120.75572 * 180.02562 * 7 6 5 34 34 H 1.09001 * 109.47247 * 205.10044 * 9 8 7 35 35 H 1.09004 * 109.46971 * 325.10246 * 9 8 7 36 36 H 0.97001 * 119.99737 * 180.02562 * 16 15 13 37 37 H 1.07996 * 120.03744 * 359.97438 * 22 21 12 38 38 H 1.07997 * 119.96365 * 180.24894 * 23 22 21 39 39 H 1.08003 * 119.92297 * 179.76353 * 24 23 22 40 40 H 1.07996 * 119.96218 * 179.97438 * 25 24 23 41 41 H 1.08002 * 120.03873 * 179.97438 * 26 25 24 42 42 H 1.08001 * 119.53816 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.1999 0.0000 4 8 1.4022 2.2184 -0.0005 5 6 3.5422 1.2774 -0.0062 6 6 4.1688 2.5219 -0.0120 7 6 5.5536 2.5782 -0.0172 8 6 6.2638 1.3877 -0.0170 9 6 7.7707 1.4008 -0.0220 10 6 8.2766 1.5295 1.3917 11 8 7.4956 1.5109 2.3193 12 7 9.5971 1.6655 1.6252 13 6 10.4737 1.7533 0.5743 14 1 10.4811 0.9882 -0.1881 15 6 11.3520 2.8259 0.4903 16 7 12.1740 2.9237 -0.5305 17 14 11.3651 4.1293 1.8283 18 1 12.4200 3.8074 2.8227 19 1 11.6435 5.4567 1.2236 20 1 10.0422 4.1601 2.5023 21 6 10.0730 1.7170 2.9385 22 6 9.1803 1.8089 3.9997 23 6 9.6538 1.8552 5.2960 24 6 11.0150 1.8199 5.5384 25 6 11.9065 1.7337 4.4845 26 6 11.4399 1.6821 3.1859 27 6 5.5745 0.1854 -0.0111 28 7 4.2598 0.1606 -0.0006 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.5838 3.4298 -0.0127 33 1 6.0677 3.5280 -0.0213 34 1 8.1407 0.4724 -0.4571 35 1 8.1248 2.2455 -0.6129 36 1 12.7876 3.6727 -0.5889 37 1 8.1175 1.8410 3.8108 38 1 8.9606 1.9225 6.1213 39 1 11.3828 1.8601 6.5531 40 1 12.9688 1.7068 4.6774 41 1 12.1366 1.6153 2.3633 42 1 6.1248 -0.7438 -0.0104 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001529031005.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:02 Heat of formation + Delta-G solvation = -26.229374 kcal Electronic energy + Delta-G solvation = -28546.976894 eV Core-core repulsion = 24458.519975 eV Total energy + Delta-G solvation = -4088.456919 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.92370 -40.28333 -39.54745 -37.67024 -36.58874 -35.27893 -33.62701 -32.33538 -32.02344 -30.21533 -29.82771 -28.51127 -27.21912 -25.38728 -24.07926 -23.47919 -22.07859 -21.54625 -21.01211 -19.48966 -18.37480 -18.18848 -17.39720 -16.63289 -16.50722 -16.27379 -15.86964 -15.64047 -15.16188 -14.86949 -14.53628 -14.31675 -14.02015 -13.81365 -13.58376 -13.39594 -13.12247 -13.08263 -12.95016 -12.67628 -12.60842 -12.37330 -12.25235 -11.81916 -11.49481 -11.42309 -11.09379 -10.94834 -10.90779 -10.75642 -10.39446 -10.19129 -9.84907 -9.58768 -9.50453 -9.13907 -9.09713 -8.52057 -8.11688 -7.18392 -6.67153 -4.64548 0.49218 1.25339 1.94018 2.07754 2.33433 2.47569 3.06139 3.16835 3.25629 3.38112 3.71272 3.97008 4.06867 4.14923 4.49463 4.72890 4.75504 4.79978 4.91315 4.93369 4.96847 4.99262 5.19260 5.32447 5.43505 5.54269 5.59307 5.69090 5.81219 5.82720 5.92109 6.05016 6.15706 6.20686 6.30854 6.31204 6.45534 6.56373 6.72842 7.08189 7.14790 7.21657 7.26721 7.43336 7.62006 7.85377 7.85726 8.05374 8.62776 8.92975 9.21836 10.34355 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017037 B = 0.002929 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.079490 B = 9556.529960 C =10402.934484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.335 6.335 3 C 0.529 3.471 4 O -0.505 6.505 5 C 0.071 3.929 6 C -0.099 4.099 7 C -0.073 4.073 8 C -0.064 4.064 9 C -0.087 4.087 10 C 0.502 3.498 11 O -0.555 6.555 12 N -0.406 5.406 13 C -0.372 4.372 14 H 0.111 0.889 15 C 0.084 3.916 16 N -0.854 5.854 17 Si 0.872 3.128 18 H -0.254 1.254 19 H -0.290 1.290 20 H -0.257 1.257 21 C 0.158 3.842 22 C -0.183 4.183 23 C -0.109 4.109 24 C -0.170 4.170 25 C -0.105 4.105 26 C -0.160 4.160 27 C 0.108 3.892 28 N -0.434 5.434 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.109 0.891 35 H 0.118 0.882 36 H 0.280 0.720 37 H 0.178 0.822 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.139 0.861 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.133 -2.599 0.682 11.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.250 6.250 3 C 0.372 3.628 4 O -0.393 6.393 5 C -0.065 4.065 6 C -0.120 4.120 7 C -0.098 4.098 8 C -0.067 4.067 9 C -0.127 4.127 10 C 0.294 3.706 11 O -0.438 6.438 12 N -0.115 5.115 13 C -0.499 4.499 14 H 0.129 0.871 15 C -0.127 4.127 16 N -0.487 5.487 17 Si 0.698 3.302 18 H -0.179 1.179 19 H -0.217 1.217 20 H -0.181 1.181 21 C 0.062 3.938 22 C -0.202 4.202 23 C -0.128 4.128 24 C -0.189 4.189 25 C -0.124 4.124 26 C -0.180 4.180 27 C -0.053 4.053 28 N -0.145 5.145 29 H 0.081 0.919 30 H 0.121 0.879 31 H 0.082 0.918 32 H 0.165 0.835 33 H 0.164 0.836 34 H 0.127 0.873 35 H 0.136 0.864 36 H 0.091 0.909 37 H 0.195 0.805 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.132 0.868 41 H 0.157 0.843 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -12.110 -3.019 0.926 12.515 hybrid contribution 0.819 1.573 0.592 1.870 sum -11.291 -1.446 1.518 11.484 Atomic orbital electron populations 1.23324 0.76362 1.03854 1.02504 1.86694 1.22980 1.31891 1.83404 1.20887 0.88015 0.81590 0.72299 1.90831 1.66047 1.36190 1.46190 1.19846 0.90368 0.90444 1.05848 1.21994 0.95162 0.97962 0.96850 1.21516 0.93020 0.99175 0.96136 1.20980 0.96956 0.94185 0.94567 1.20488 0.88899 1.06891 0.96415 1.20590 0.81853 0.77914 0.90277 1.90271 1.56204 1.53043 1.44304 1.41411 1.05577 1.60891 1.03592 1.19035 1.18098 1.10245 1.02472 0.87119 1.25479 0.94656 0.96549 0.95975 1.69639 1.19835 1.30969 1.28257 0.86983 0.81281 0.80193 0.81762 1.17867 1.21741 1.18135 1.18476 0.92871 0.96911 0.85569 1.22747 1.03716 1.02681 0.91066 1.21029 0.94996 1.00179 0.96586 1.20934 0.93740 1.06133 0.98135 1.20830 0.98921 1.00289 0.92339 1.21036 0.94795 1.04529 0.97670 1.22718 0.88860 0.97934 0.95752 1.67592 1.08244 1.29927 1.08754 0.91858 0.87892 0.91830 0.83485 0.83634 0.87313 0.86375 0.90906 0.80547 0.86960 0.87313 0.86826 0.84341 0.81779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.36 16 2 O -0.33 -4.40 10.38 -40.41 -0.42 -4.82 16 3 C 0.53 7.68 7.95 34.77 0.28 7.96 16 4 O -0.50 -7.79 16.11 -19.21 -0.31 -8.10 16 5 C 0.07 1.06 6.75 -83.02 -0.56 0.50 16 6 C -0.10 -1.35 9.63 -39.04 -0.38 -1.73 16 7 C -0.07 -1.01 9.87 -39.31 -0.39 -1.39 16 8 C -0.06 -0.94 4.41 -104.35 -0.46 -1.40 16 9 C -0.09 -1.37 4.70 -29.04 -0.14 -1.51 16 10 C 0.50 10.07 7.56 -10.98 -0.08 9.99 16 11 O -0.55 -11.87 12.46 5.56 0.07 -11.80 16 12 N -0.41 -8.97 2.31 -58.98 -0.14 -9.11 16 13 C -0.37 -8.65 7.88 -14.94 -0.12 -8.76 16 14 H 0.11 2.64 7.99 -52.48 -0.42 2.22 16 15 C 0.08 2.03 4.60 -17.49 -0.08 1.95 16 16 N -0.85 -21.58 13.96 55.49 0.77 -20.80 16 17 Si 0.87 19.85 23.84 -169.99 -4.05 15.80 16 18 H -0.25 -5.64 6.13 56.52 0.35 -5.29 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.26 -6.17 6.48 56.52 0.37 -5.80 16 21 C 0.16 3.52 4.12 -83.69 -0.35 3.17 16 22 C -0.18 -3.86 9.03 -39.37 -0.36 -4.22 16 23 C -0.11 -2.01 10.04 -39.61 -0.40 -2.41 16 24 C -0.17 -2.98 10.04 -39.53 -0.40 -3.38 16 25 C -0.11 -1.97 9.76 -39.61 -0.39 -2.36 16 26 C -0.16 -3.43 5.58 -39.37 -0.22 -3.65 16 27 C 0.11 1.55 10.84 -17.57 -0.19 1.36 16 28 N -0.43 -6.69 10.12 -9.81 -0.10 -6.79 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.15 1.75 7.64 -52.48 -0.40 1.35 16 33 H 0.15 1.78 8.06 -52.48 -0.42 1.35 16 34 H 0.11 1.53 8.06 -51.93 -0.42 1.11 16 35 H 0.12 1.84 7.88 -51.93 -0.41 1.43 16 36 H 0.28 6.69 8.31 -40.82 -0.34 6.35 16 37 H 0.18 3.88 4.59 -55.94 -0.26 3.62 16 38 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 39 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 40 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.14 3.12 5.68 -52.49 -0.30 2.82 16 42 H 0.17 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 357.07 15.07 5.38 5.38 Total: -1.00 -29.26 357.07 -6.75 -36.01 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -4.81 Total: 8.76 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -3.15 Total: -4.53 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.54 Total: -36.70 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.66 Total: -24.72 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.05 Total: 15.80 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.26 -6.75 -36.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001529031005.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.779 kcal (2) G-P(sol) polarization free energy of solvation -29.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds