Wall clock time and date at job start Sat Apr 11 2020 05:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34221 * 116.99886 * 2 1 4 4 O 1.20826 * 120.00378 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99878 * 179.97438 * 3 2 1 6 6 C 1.50701 * 109.46875 * 180.02562 * 5 3 2 7 7 C 1.38404 * 119.92151 * 270.01976 * 6 5 3 8 8 C 1.38359 * 120.30745 * 180.02562 * 7 6 5 9 9 C 1.37953 * 120.15308 * 359.70005 * 8 7 6 10 10 C 1.39647 * 119.84347 * 0.53293 * 9 8 7 11 11 C 1.47690 * 120.15035 * 179.76712 * 10 9 8 12 12 O 1.21571 * 119.99673 * 217.77142 * 11 10 9 13 13 N 1.34770 * 120.00019 * 37.77658 * 11 10 9 14 14 C 1.37003 * 120.00091 * 185.70964 * 13 11 10 15 15 H 1.07993 * 120.00465 * 218.23058 * 14 13 11 16 16 C 1.38984 * 119.99732 * 38.23006 * 14 13 11 17 17 N 1.31372 * 119.99906 * 21.73155 * 16 14 13 18 18 Si 1.86795 * 120.00266 * 201.72695 * 16 14 13 19 19 H 1.48501 * 109.47049 * 90.00014 * 18 16 14 20 20 H 1.48500 * 109.47200 * 210.00170 * 18 16 14 21 21 H 1.48510 * 109.47048 * 330.00153 * 18 16 14 22 22 C 1.39349 * 120.00154 * 5.71503 * 13 11 10 23 23 C 1.39081 * 119.70136 * 42.97809 * 22 13 11 24 24 C 1.38379 * 119.10087 * 179.74773 * 23 22 13 25 25 C 1.38828 * 118.48747 * 0.49195 * 24 23 22 26 26 C 1.38148 * 119.31762 * 359.48729 * 25 24 23 27 27 N 1.31879 * 120.85127 * 0.27189 * 26 25 24 28 28 C 1.37908 * 119.92567 * 90.00546 * 6 5 3 29 29 H 1.09003 * 109.47170 * 300.00046 * 1 2 3 30 30 H 1.09000 * 109.47257 * 59.99844 * 1 2 3 31 31 H 1.08998 * 109.46965 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47078 * 60.00474 * 5 3 2 33 33 H 1.08995 * 109.47175 * 299.99593 * 5 3 2 34 34 H 1.07999 * 119.84978 * 0.02562 * 7 6 5 35 35 H 1.08006 * 119.92367 * 179.97438 * 8 7 6 36 36 H 1.08001 * 120.07896 * 180.27749 * 9 8 7 37 37 H 0.96995 * 120.00209 * 184.96632 * 17 16 14 38 38 H 1.08010 * 120.44742 * 359.97438 * 23 22 13 39 39 H 1.07998 * 120.75449 * 180.25789 * 24 23 22 40 40 H 1.07998 * 120.34027 * 179.75012 * 25 24 23 41 41 H 1.08003 * 119.57456 * 180.29368 * 26 25 24 42 42 H 1.07995 * 120.07617 * 0.02562 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 3.9936 2.7200 0.0011 7 6 4.1893 3.3825 -1.1982 8 6 4.5821 4.7091 -1.2071 9 6 4.7753 5.3825 -0.0187 10 6 4.5843 4.7189 1.1951 11 6 4.7943 5.4319 2.4714 12 8 5.2995 4.8543 3.4143 13 7 4.4256 6.7227 2.5907 14 6 4.7254 7.4180 3.7325 15 1 4.0154 8.1240 4.1370 16 6 5.9435 7.2147 4.3702 17 7 6.9594 6.7165 3.7026 18 14 6.1363 7.6500 6.1765 19 1 5.7858 6.4717 7.0097 20 1 7.5429 8.0442 6.4433 21 1 5.2332 8.7801 6.5124 22 6 3.7394 7.3502 1.5528 23 6 2.7116 6.6775 0.9005 24 6 2.0349 7.3144 -0.1249 25 6 2.4179 8.6032 -0.4708 26 6 3.4479 9.2113 0.2204 27 7 4.0715 8.5814 1.1969 28 6 4.1883 3.3794 1.1965 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.9564 0.7806 -0.8891 33 1 3.9557 0.7810 0.8908 34 1 4.0348 2.8615 -2.1316 35 1 4.7335 5.2199 -2.1466 36 1 5.0775 6.4194 -0.0270 37 1 7.7868 6.5073 4.1634 38 1 2.4427 5.6731 1.1928 39 1 1.2298 6.8186 -0.6468 40 1 1.9130 9.1266 -1.2692 41 1 3.7461 10.2156 -0.0421 42 1 4.0353 2.8613 2.1316 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001537821546.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:11 Heat of formation + Delta-G solvation = -24.207869 kcal Electronic energy + Delta-G solvation = -29593.529981 eV Core-core repulsion = 25505.160721 eV Total energy + Delta-G solvation = -4088.369260 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.68517 -40.27403 -38.71732 -37.71856 -36.48224 -34.45982 -33.16333 -32.11306 -31.69197 -30.51445 -29.15440 -28.76170 -26.89152 -25.43293 -23.47172 -22.66572 -22.15579 -22.10646 -20.78191 -19.62192 -17.71552 -17.60397 -17.19540 -16.64344 -16.37520 -16.02590 -15.74822 -15.47540 -15.07814 -14.65067 -14.42649 -14.01677 -13.80510 -13.70193 -13.57435 -13.36434 -12.97101 -12.82210 -12.72469 -12.47302 -12.24722 -12.12116 -11.97140 -11.52674 -11.38589 -11.15971 -10.93798 -10.93630 -10.90798 -10.69489 -10.54867 -10.32029 -9.46907 -9.27115 -8.81985 -8.70391 -8.53910 -8.45285 -8.17597 -7.20940 -6.31441 -4.00858 1.35677 1.58419 1.79357 2.03508 2.15422 2.68530 3.28353 3.35281 3.35974 3.72693 4.06982 4.30077 4.48922 4.57652 4.63846 4.85725 4.90241 4.92469 5.00512 5.12385 5.23743 5.29843 5.33712 5.35265 5.39000 5.41280 5.47445 5.68805 5.69998 5.80306 5.86977 6.05295 6.21444 6.26702 6.32478 6.34620 6.65653 6.67536 6.71602 6.82409 6.85756 7.19792 7.28072 7.51408 7.68201 8.01760 8.46893 8.83888 8.96616 9.39260 9.84114 10.76192 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011289 B = 0.004157 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.801594 B = 6733.648449 C = 8040.483610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.364 6.364 3 C 0.458 3.542 4 O -0.492 6.492 5 C -0.067 4.067 6 C -0.095 4.095 7 C -0.096 4.096 8 C -0.125 4.125 9 C -0.071 4.071 10 C -0.097 4.097 11 C 0.527 3.473 12 O -0.499 6.499 13 N -0.379 5.379 14 C -0.335 4.335 15 H 0.091 0.909 16 C 0.072 3.928 17 N -0.821 5.821 18 Si 0.920 3.080 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.270 1.270 22 C 0.364 3.636 23 C -0.203 4.203 24 C -0.056 4.056 25 C -0.231 4.231 26 C 0.120 3.880 27 N -0.493 5.493 28 C -0.063 4.063 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.270 0.730 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.146 0.854 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.226 -9.364 -12.036 17.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.281 6.281 3 C 0.300 3.700 4 O -0.378 6.378 5 C -0.104 4.104 6 C -0.095 4.095 7 C -0.115 4.115 8 C -0.144 4.144 9 C -0.090 4.090 10 C -0.101 4.101 11 C 0.316 3.684 12 O -0.374 6.374 13 N -0.092 5.092 14 C -0.460 4.460 15 H 0.109 0.891 16 C -0.140 4.140 17 N -0.453 5.453 18 Si 0.746 3.254 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.194 1.194 22 C 0.135 3.865 23 C -0.226 4.226 24 C -0.082 4.082 25 C -0.253 4.253 26 C -0.039 4.039 27 N -0.208 5.208 28 C -0.082 4.082 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.117 0.883 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.081 0.919 38 H 0.145 0.855 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.163 0.837 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.213 -9.032 -10.964 16.408 hybrid contribution -0.670 -0.012 0.213 0.703 sum -8.882 -9.044 -10.752 16.622 Atomic orbital electron populations 1.23239 0.76495 1.03454 1.02631 1.86498 1.23349 1.33759 1.84522 1.23822 0.92080 0.81323 0.72793 1.90715 1.66954 1.36172 1.43919 1.20263 0.87546 0.95991 1.06611 1.19000 1.03076 0.93735 0.93677 1.20918 0.99136 0.94733 0.96685 1.20911 1.01289 0.94431 0.97723 1.21480 0.96277 0.99541 0.91695 1.20256 1.00862 0.94548 0.94424 1.17872 0.82532 0.80919 0.87044 1.90626 1.41704 1.65246 1.39831 1.41099 1.48548 1.07677 1.11871 1.19223 1.01366 1.25902 0.99554 0.89108 1.25245 0.93518 0.95340 0.99916 1.69893 1.02273 1.37090 1.36046 0.86062 0.77396 0.78751 0.83181 1.19999 1.20972 1.19447 1.18983 0.90771 0.89535 0.87228 1.21838 0.98092 1.01941 1.00767 1.21173 0.97602 0.94165 0.95235 1.21767 1.02536 0.96905 1.04140 1.22478 0.91857 0.98776 0.90824 1.67456 1.28046 1.10104 1.15172 1.20917 0.96800 0.93011 0.97441 0.91839 0.91985 0.88273 0.86821 0.86650 0.86426 0.86034 0.85963 0.91922 0.85533 0.85874 0.86055 0.83700 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.36 16 2 O -0.36 -3.92 10.57 -39.23 -0.41 -4.34 16 3 C 0.46 5.74 7.95 36.01 0.29 6.03 16 4 O -0.49 -7.82 15.78 -18.75 -0.30 -8.12 16 5 C -0.07 -0.72 5.94 -29.03 -0.17 -0.89 16 6 C -0.09 -1.38 4.37 -104.68 -0.46 -1.84 16 7 C -0.10 -1.33 9.69 -39.48 -0.38 -1.71 16 8 C -0.13 -1.93 10.03 -39.64 -0.40 -2.33 16 9 C -0.07 -1.37 6.78 -39.16 -0.27 -1.64 16 10 C -0.10 -2.08 3.74 -104.97 -0.39 -2.47 16 11 C 0.53 13.81 6.28 -12.40 -0.08 13.73 16 12 O -0.50 -14.60 14.54 5.30 0.08 -14.52 16 13 N -0.38 -10.09 2.74 -61.76 -0.17 -10.26 16 14 C -0.33 -9.53 8.97 -14.96 -0.13 -9.66 16 15 H 0.09 2.55 7.92 -52.49 -0.42 2.13 16 16 C 0.07 2.05 4.27 -17.47 -0.07 1.97 16 17 N -0.82 -24.36 11.62 55.50 0.64 -23.71 16 18 Si 0.92 21.96 29.61 -169.99 -5.03 16.93 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 C 0.36 8.42 4.44 -154.70 -0.69 7.73 16 23 C -0.20 -4.00 6.61 -39.22 -0.26 -4.26 16 24 C -0.06 -0.91 10.17 -39.31 -0.40 -1.31 16 25 C -0.23 -3.52 10.11 -39.40 -0.40 -3.92 16 26 C 0.12 2.11 11.18 -17.56 -0.20 1.91 16 27 N -0.49 -11.11 10.01 -12.35 -0.12 -11.24 16 28 C -0.06 -1.14 9.28 -39.16 -0.36 -1.51 16 29 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 30 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 31 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.11 0.88 8.08 -51.93 -0.42 0.46 16 33 H 0.12 1.07 8.08 -51.93 -0.42 0.65 16 34 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 36 H 0.12 2.61 6.38 -52.49 -0.33 2.27 16 37 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.13 2.57 6.66 -52.48 -0.35 2.22 16 39 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 41 H 0.15 2.07 8.06 -52.48 -0.42 1.64 16 42 H 0.13 2.27 8.04 -52.49 -0.42 1.85 16 LS Contribution 364.71 15.07 5.50 5.50 Total: -1.00 -35.71 364.71 -8.00 -43.71 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -4.88 Total: 4.85 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -3.30 Total: 1.19 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: 0.35 Total: -45.20 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.63 Total: -26.98 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.71 -8.00 -43.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537821546.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.504 kcal (2) G-P(sol) polarization free energy of solvation -35.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds