Wall clock time and date at job start Sat Apr 11 2020 05:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34221 * 116.99886 * 2 1 4 4 O 1.20826 * 120.00378 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99878 * 179.97438 * 3 2 1 6 6 C 1.50701 * 109.46875 * 180.02562 * 5 3 2 7 7 C 1.38404 * 119.92151 * 270.01976 * 6 5 3 8 8 C 1.38359 * 120.30745 * 180.02562 * 7 6 5 9 9 C 1.37953 * 120.15308 * 359.70005 * 8 7 6 10 10 C 1.39647 * 119.84347 * 0.53293 * 9 8 7 11 11 C 1.47690 * 120.15035 * 179.76712 * 10 9 8 12 12 O 1.21571 * 119.99673 * 217.77142 * 11 10 9 13 13 N 1.34770 * 120.00019 * 37.77658 * 11 10 9 14 14 C 1.37003 * 120.00091 * 185.70964 * 13 11 10 15 15 H 1.07993 * 120.00465 * 218.23058 * 14 13 11 16 16 C 1.38984 * 119.99732 * 38.23006 * 14 13 11 17 17 N 1.31372 * 119.99906 * 21.73155 * 16 14 13 18 18 Si 1.86795 * 120.00266 * 201.72695 * 16 14 13 19 19 H 1.48501 * 109.47049 * 90.00014 * 18 16 14 20 20 H 1.48500 * 109.47200 * 210.00170 * 18 16 14 21 21 H 1.48510 * 109.47048 * 330.00153 * 18 16 14 22 22 C 1.39349 * 120.00154 * 5.71503 * 13 11 10 23 23 C 1.39081 * 119.70136 * 42.97809 * 22 13 11 24 24 C 1.38379 * 119.10087 * 179.74773 * 23 22 13 25 25 C 1.38828 * 118.48747 * 0.49195 * 24 23 22 26 26 C 1.38148 * 119.31762 * 359.48729 * 25 24 23 27 27 N 1.31879 * 120.85127 * 0.27189 * 26 25 24 28 28 C 1.37908 * 119.92567 * 90.00546 * 6 5 3 29 29 H 1.09003 * 109.47170 * 300.00046 * 1 2 3 30 30 H 1.09000 * 109.47257 * 59.99844 * 1 2 3 31 31 H 1.08998 * 109.46965 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47078 * 60.00474 * 5 3 2 33 33 H 1.08995 * 109.47175 * 299.99593 * 5 3 2 34 34 H 1.07999 * 119.84978 * 0.02562 * 7 6 5 35 35 H 1.08006 * 119.92367 * 179.97438 * 8 7 6 36 36 H 1.08001 * 120.07896 * 180.27749 * 9 8 7 37 37 H 0.96995 * 120.00209 * 184.96632 * 17 16 14 38 38 H 1.08010 * 120.44742 * 359.97438 * 23 22 13 39 39 H 1.07998 * 120.75449 * 180.25789 * 24 23 22 40 40 H 1.07998 * 120.34027 * 179.75012 * 25 24 23 41 41 H 1.08003 * 119.57456 * 180.29368 * 26 25 24 42 42 H 1.07995 * 120.07617 * 0.02562 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 3.9936 2.7200 0.0011 7 6 4.1893 3.3825 -1.1982 8 6 4.5821 4.7091 -1.2071 9 6 4.7753 5.3825 -0.0187 10 6 4.5843 4.7189 1.1951 11 6 4.7943 5.4319 2.4714 12 8 5.2995 4.8543 3.4143 13 7 4.4256 6.7227 2.5907 14 6 4.7254 7.4180 3.7325 15 1 4.0154 8.1240 4.1370 16 6 5.9435 7.2147 4.3702 17 7 6.9594 6.7165 3.7026 18 14 6.1363 7.6500 6.1765 19 1 5.7858 6.4717 7.0097 20 1 7.5429 8.0442 6.4433 21 1 5.2332 8.7801 6.5124 22 6 3.7394 7.3502 1.5528 23 6 2.7116 6.6775 0.9005 24 6 2.0349 7.3144 -0.1249 25 6 2.4179 8.6032 -0.4708 26 6 3.4479 9.2113 0.2204 27 7 4.0715 8.5814 1.1969 28 6 4.1883 3.3794 1.1965 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.9564 0.7806 -0.8891 33 1 3.9557 0.7810 0.8908 34 1 4.0348 2.8615 -2.1316 35 1 4.7335 5.2199 -2.1466 36 1 5.0775 6.4194 -0.0270 37 1 7.7868 6.5073 4.1634 38 1 2.4427 5.6731 1.1928 39 1 1.2298 6.8186 -0.6468 40 1 1.9130 9.1266 -1.2692 41 1 3.7461 10.2156 -0.0421 42 1 4.0353 2.8613 2.1316 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001537821546.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:11 Heat of formation + Delta-G solvation = -47.164572 kcal Electronic energy + Delta-G solvation = -29594.525458 eV Core-core repulsion = 25505.160721 eV Total energy + Delta-G solvation = -4089.364737 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.05892 -41.46754 -40.13246 -39.32165 -37.44809 -36.33232 -34.59594 -33.82809 -33.15538 -31.94240 -30.74479 -29.76100 -27.80966 -27.27578 -25.09778 -24.11712 -23.64941 -23.31566 -21.96008 -21.21228 -19.40180 -18.73138 -18.62148 -17.54574 -17.50115 -17.40776 -17.28775 -16.90607 -16.53408 -16.44994 -15.89060 -15.71470 -15.15279 -15.13559 -14.65702 -14.48274 -14.46617 -14.30755 -14.10614 -13.88765 -13.59834 -13.29442 -13.05034 -12.97264 -12.89074 -12.84883 -12.65073 -12.48032 -12.17700 -12.08647 -11.75843 -11.55851 -11.33180 -10.75962 -10.67916 -10.36354 -10.16048 -9.85495 -9.67355 -8.98670 -8.39495 -6.15893 -0.02216 0.27079 0.35909 0.61237 1.22475 1.31717 1.39705 1.46266 1.80190 2.11376 2.27095 2.68975 2.87429 2.94966 3.25964 3.53373 3.61324 3.90525 3.95194 4.01879 4.09968 4.12750 4.25473 4.30952 4.34951 4.36676 4.38326 4.39877 4.55154 4.61715 4.72394 4.74560 4.89789 4.93270 5.01269 5.25707 5.29741 5.37687 5.41121 5.42641 5.45500 5.49680 5.84295 5.96714 6.04180 6.61525 6.77436 6.85707 7.15694 7.57121 7.91793 8.68288 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011289 B = 0.004157 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.801594 B = 6733.648449 C = 8040.483610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.462 3.538 4 O -0.533 6.533 5 C -0.065 4.065 6 C -0.084 4.084 7 C -0.078 4.078 8 C -0.116 4.116 9 C -0.083 4.083 10 C -0.127 4.127 11 C 0.515 3.485 12 O -0.557 6.557 13 N -0.403 5.403 14 C -0.360 4.360 15 H 0.079 0.921 16 C 0.025 3.975 17 N -0.863 5.863 18 Si 0.981 3.019 19 H -0.280 1.280 20 H -0.274 1.274 21 H -0.255 1.255 22 C 0.337 3.663 23 C -0.199 4.199 24 C -0.049 4.049 25 C -0.194 4.194 26 C 0.106 3.894 27 N -0.537 5.537 28 C -0.076 4.076 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.132 0.868 32 H 0.159 0.841 33 H 0.129 0.871 34 H 0.168 0.832 35 H 0.155 0.845 36 H 0.092 0.908 37 H 0.266 0.734 38 H 0.113 0.887 39 H 0.162 0.838 40 H 0.175 0.825 41 H 0.178 0.822 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.466 -10.319 -16.212 22.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C 0.306 3.694 4 O -0.422 6.422 5 C -0.102 4.102 6 C -0.084 4.084 7 C -0.096 4.096 8 C -0.134 4.134 9 C -0.102 4.102 10 C -0.130 4.130 11 C 0.307 3.693 12 O -0.436 6.436 13 N -0.116 5.116 14 C -0.486 4.486 15 H 0.097 0.903 16 C -0.183 4.183 17 N -0.497 5.497 18 Si 0.804 3.196 19 H -0.206 1.206 20 H -0.199 1.199 21 H -0.179 1.179 22 C 0.110 3.890 23 C -0.222 4.222 24 C -0.074 4.074 25 C -0.214 4.214 26 C -0.052 4.052 27 N -0.252 5.252 28 C -0.096 4.096 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.150 0.850 32 H 0.176 0.824 33 H 0.147 0.853 34 H 0.185 0.815 35 H 0.173 0.827 36 H 0.111 0.889 37 H 0.076 0.924 38 H 0.131 0.869 39 H 0.180 0.820 40 H 0.193 0.807 41 H 0.195 0.805 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.500 -9.950 -15.192 20.977 hybrid contribution -0.222 0.285 1.209 1.262 sum -10.722 -9.665 -13.983 20.097 Atomic orbital electron populations 1.23512 0.75080 1.05568 1.02304 1.86492 1.24726 1.32667 1.83925 1.24048 0.92562 0.81178 0.71593 1.90708 1.67917 1.37473 1.46061 1.20394 0.86658 0.93597 1.09522 1.19356 1.01008 0.95584 0.92438 1.21478 0.96011 0.93944 0.98146 1.21256 0.99735 0.95198 0.97183 1.21251 0.97947 0.98491 0.92522 1.19977 1.04478 0.95726 0.92829 1.18686 0.81212 0.80983 0.88444 1.90538 1.44456 1.66541 1.42084 1.41194 1.49495 1.08119 1.12813 1.19280 1.01230 1.26182 1.01889 0.90350 1.26123 0.93047 0.95251 1.03860 1.69994 1.02625 1.39727 1.37393 0.85148 0.77951 0.78509 0.77980 1.20617 1.19865 1.17903 1.19019 0.91435 0.90217 0.88319 1.21766 0.97520 1.01399 1.01554 1.21638 0.97530 0.94581 0.93701 1.22309 1.00023 0.95901 1.03189 1.23149 0.92324 1.00040 0.89732 1.67333 1.30152 1.10387 1.17326 1.20968 0.97711 0.92062 0.98820 0.92829 0.91719 0.84982 0.82354 0.85271 0.81453 0.82695 0.88938 0.92419 0.86926 0.82017 0.80744 0.80547 0.86972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.60 16 2 O -0.36 -6.75 10.57 -51.33 -0.54 -7.30 16 3 C 0.46 10.37 7.95 71.24 0.57 10.94 16 4 O -0.53 -16.01 15.78 21.96 0.35 -15.67 16 5 C -0.07 -1.18 5.94 29.10 0.17 -1.01 16 6 C -0.08 -2.26 4.37 -19.90 -0.09 -2.35 16 7 C -0.08 -1.83 9.69 22.34 0.22 -1.61 16 8 C -0.12 -3.25 10.03 22.23 0.22 -3.03 16 9 C -0.08 -3.26 6.78 22.54 0.15 -3.11 16 10 C -0.13 -5.74 3.74 -20.09 -0.08 -5.81 16 11 C 0.52 29.48 6.28 86.74 0.54 30.03 16 12 O -0.56 -35.82 14.54 -3.94 -0.06 -35.88 16 13 N -0.40 -23.17 2.74 -467.59 -1.28 -24.45 16 14 C -0.36 -22.17 8.97 84.06 0.75 -21.41 16 15 H 0.08 4.79 7.92 -2.91 -0.02 4.76 16 16 C 0.02 1.50 4.27 84.94 0.36 1.86 16 17 N -0.86 -55.36 11.62 21.67 0.25 -55.10 16 18 Si 0.98 48.10 29.61 68.60 2.03 50.13 16 19 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 20 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 21 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 22 C 0.34 16.37 4.44 132.93 0.59 16.96 16 23 C -0.20 -7.94 6.61 22.51 0.15 -7.79 16 24 C -0.05 -1.43 10.17 22.44 0.23 -1.20 16 25 C -0.19 -5.03 10.11 22.39 0.23 -4.80 16 26 C 0.11 3.51 11.18 84.66 0.95 4.46 16 27 N -0.54 -24.92 10.01 -192.99 -1.93 -26.85 16 28 C -0.08 -2.89 9.28 22.54 0.21 -2.68 16 29 H 0.05 0.87 8.13 -2.39 -0.02 0.85 16 30 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 31 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.16 1.52 8.08 -2.39 -0.02 1.50 16 33 H 0.13 2.07 8.08 -2.39 -0.02 2.05 16 34 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 35 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 36 H 0.09 4.15 6.38 -2.91 -0.02 4.13 16 37 H 0.27 16.24 8.31 -92.71 -0.77 15.47 16 38 H 0.11 4.78 6.66 -2.91 -0.02 4.76 16 39 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 40 H 0.18 2.82 8.06 -2.91 -0.02 2.79 16 41 H 0.18 4.54 8.06 -2.91 -0.02 4.52 16 42 H 0.11 4.40 8.04 -2.91 -0.02 4.37 16 Total: -1.00 -90.32 364.71 6.24 -84.08 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 1.05 Total: 19.99 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 6.38 Total: 11.05 kcal Atomic # 7 Polarization: -103.45 SS G_CDS: -2.96 Total: -106.41 kcal Atomic # 8 Polarization: -58.59 SS G_CDS: -0.25 Total: -58.84 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.03 Total: 50.13 kcal Total: -90.32 6.24 -84.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537821546.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.915 kcal (2) G-P(sol) polarization free energy of solvation -90.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds