Wall clock time and date at job start Sat Apr 11 2020 05:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35866 * 117.00570 * 2 1 4 4 C 1.36559 * 119.57728 * 359.97438 * 3 2 1 5 5 C 1.40366 * 119.77094 * 179.97438 * 4 3 2 6 6 C 1.40766 * 120.92021 * 180.26477 * 5 4 3 7 7 C 1.35687 * 120.05296 * 180.24981 * 6 5 4 8 8 C 1.40727 * 120.82862 * 359.45988 * 7 6 5 9 9 C 1.47556 * 119.76110 * 180.27841 * 8 7 6 10 10 O 1.21625 * 119.99898 * 310.88374 * 9 8 7 11 11 N 1.34780 * 120.00254 * 130.88727 * 9 8 7 12 12 C 1.36871 * 119.99541 * 184.93353 * 11 9 8 13 13 H 1.07994 * 120.00332 * 321.11046 * 12 11 9 14 14 C 1.39045 * 119.99513 * 141.11491 * 12 11 9 15 15 N 1.31367 * 120.00165 * 156.32780 * 14 12 11 16 16 Si 1.86804 * 119.99828 * 336.32377 * 14 12 11 17 17 H 1.48501 * 109.46792 * 94.32811 * 16 14 12 18 18 H 1.48503 * 109.46754 * 214.32501 * 16 14 12 19 19 H 1.48491 * 109.47433 * 334.32643 * 16 14 12 20 20 C 1.46497 * 120.00096 * 4.93160 * 11 9 8 21 21 C 1.47199 * 109.46920 * 93.89473 * 20 11 9 22 22 N 8.11640 * 137.53052 * 7.17934 * 2 1 3 23 23 C 1.38671 * 120.48361 * 0.29922 * 8 7 6 24 24 C 1.40193 * 119.46287 * 359.97438 * 23 8 7 25 25 C 1.40686 * 121.00559 * 180.02562 * 24 23 8 26 26 C 1.36383 * 119.70808 * 179.97438 * 25 24 23 27 27 O 1.35942 * 119.61751 * 180.02562 * 26 25 24 28 28 C 1.42901 * 116.99266 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.47459 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47026 * 300.00364 * 1 2 3 31 31 H 1.08998 * 109.46816 * 59.99826 * 1 2 3 32 32 H 1.08003 * 120.11361 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.97628 * 0.02562 * 6 5 4 34 34 H 1.08001 * 119.58416 * 179.74309 * 7 6 5 35 35 H 0.96996 * 120.00216 * 179.97438 * 15 14 12 36 36 H 1.08994 * 109.47109 * 213.89567 * 20 11 9 37 37 H 1.09001 * 109.47122 * 333.89714 * 20 11 9 38 38 H 1.08002 * 120.26724 * 179.97438 * 23 8 7 39 39 H 1.08008 * 120.14326 * 359.95127 * 25 24 23 40 40 H 1.09000 * 109.47064 * 299.99591 * 28 27 26 41 41 H 1.08997 * 109.47809 * 59.99819 * 28 27 26 42 42 H 1.09001 * 109.46906 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2105 0.0000 4 6 1.2939 2.3504 -0.0005 5 6 1.9270 3.6031 0.0000 6 6 1.1755 4.7934 0.0051 7 6 1.8058 5.9949 0.0004 8 6 3.2109 6.0723 0.0019 9 6 3.8719 7.3916 0.0029 10 8 3.5287 8.2443 -0.7936 11 7 4.8559 7.6517 0.8864 12 6 5.3995 8.9059 0.9556 13 1 5.5678 9.4721 0.0515 14 6 5.7351 9.4510 2.1900 15 7 6.6448 10.3956 2.2654 16 14 4.8921 8.8400 3.7410 17 1 5.7185 7.7770 4.3675 18 1 4.7308 9.9677 4.6936 19 1 3.5571 8.2896 3.3949 20 6 5.3436 6.5920 1.7726 21 6 6.5130 5.9402 1.1608 22 7 7.4160 5.4372 0.6849 23 6 3.9790 4.9177 0.0019 24 6 3.3447 3.6675 0.0010 25 6 4.0921 2.4757 0.0016 26 6 3.4476 1.2737 0.0012 27 8 4.1717 0.1231 0.0023 28 6 5.5948 0.2524 0.0043 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2156 2.2881 -0.0014 33 1 0.0964 4.7502 0.0090 34 1 1.2217 6.9034 0.0001 35 1 6.8787 10.7761 3.1264 36 1 5.6287 7.0234 2.7321 37 1 4.5554 5.8548 1.9255 38 1 5.0572 4.9812 0.0026 39 1 5.1716 2.5124 0.0019 40 1 5.9115 0.7969 -0.8852 41 1 5.9090 0.7970 0.8947 42 1 6.0496 -0.7382 0.0046 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001546233937.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:20 Heat of formation + Delta-G solvation = -22.377636 kcal Electronic energy + Delta-G solvation = -29075.072263 eV Core-core repulsion = 24986.782367 eV Total energy + Delta-G solvation = -4088.289895 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.13058 -41.17179 -39.57525 -39.47475 -38.06793 -36.55847 -35.89271 -34.33347 -33.48057 -31.20853 -30.12377 -29.44666 -28.57001 -28.11121 -27.07701 -24.40301 -23.83678 -22.92628 -21.51791 -20.46422 -19.43866 -19.28042 -18.59993 -18.33201 -17.68831 -17.41694 -17.11136 -16.74424 -16.34559 -16.19747 -16.15853 -15.89126 -15.45444 -15.24911 -15.15021 -14.71249 -14.49685 -14.35765 -14.28752 -14.09777 -14.04731 -13.65943 -13.40206 -13.26514 -12.96985 -12.93469 -12.76734 -12.56007 -12.30756 -12.26624 -12.14466 -11.91976 -11.84689 -11.29842 -11.09331 -10.85552 -10.63485 -10.07261 -8.94369 -8.82857 -8.57577 -6.25584 -0.65944 -0.13082 0.86998 1.19281 1.30869 1.33410 1.47375 1.58304 1.62566 1.99828 2.16411 2.21215 2.27489 2.59626 2.73672 2.97164 3.07473 3.45386 3.62887 3.86694 3.93337 3.94588 3.96969 4.07470 4.12044 4.21576 4.27159 4.33449 4.38893 4.48666 4.51916 4.56096 4.69864 4.74906 4.83979 4.85583 4.99089 5.14691 5.35691 5.36256 5.48716 5.51566 5.82802 5.97353 6.01800 6.29425 6.37562 6.49910 6.76246 7.06770 7.59208 8.58536 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015228 B = 0.003534 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.274950 B = 7922.075585 C = 8803.254007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.324 6.324 3 C 0.115 3.885 4 C -0.167 4.167 5 C -0.038 4.038 6 C -0.083 4.083 7 C -0.089 4.089 8 C -0.118 4.118 9 C 0.511 3.489 10 O -0.589 6.589 11 N -0.460 5.460 12 C -0.350 4.350 13 H 0.050 0.950 14 C 0.023 3.977 15 N -0.895 5.895 16 Si 0.921 3.079 17 H -0.227 1.227 18 H -0.277 1.277 19 H -0.238 1.238 20 C 0.175 3.825 21 C 0.217 3.783 22 N -0.451 5.451 23 C -0.094 4.094 24 C -0.052 4.052 25 C -0.182 4.182 26 C 0.112 3.888 27 O -0.320 6.320 28 C 0.016 3.984 29 H 0.118 0.882 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.178 0.822 33 H 0.173 0.827 34 H 0.132 0.868 35 H 0.285 0.715 36 H 0.116 0.884 37 H 0.154 0.846 38 H 0.117 0.883 39 H 0.144 0.856 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.949 -23.710 2.724 27.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.238 6.238 3 C 0.069 3.931 4 C -0.186 4.186 5 C -0.039 4.039 6 C -0.101 4.101 7 C -0.108 4.108 8 C -0.122 4.122 9 C 0.302 3.698 10 O -0.472 6.472 11 N -0.181 5.181 12 C -0.477 4.477 13 H 0.068 0.932 14 C -0.182 4.182 15 N -0.530 5.530 16 Si 0.741 3.259 17 H -0.152 1.152 18 H -0.203 1.203 19 H -0.160 1.160 20 C 0.049 3.951 21 C -0.101 4.101 22 N -0.131 5.131 23 C -0.113 4.113 24 C -0.052 4.052 25 C -0.201 4.201 26 C 0.066 3.934 27 O -0.234 6.234 28 C -0.078 4.078 29 H 0.136 0.864 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.195 0.805 33 H 0.191 0.809 34 H 0.150 0.850 35 H 0.095 0.905 36 H 0.133 0.867 37 H 0.172 0.828 38 H 0.134 0.866 39 H 0.162 0.838 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.620 -24.254 1.719 27.395 hybrid contribution 0.372 1.400 0.410 1.505 sum -12.249 -22.854 2.129 26.017 Atomic orbital electron populations 1.23464 0.75990 1.05867 1.02830 1.86137 1.23711 1.25651 1.88293 1.18179 0.88914 0.86125 0.99874 1.21120 1.01513 0.89059 1.06901 1.18036 0.91587 0.94376 0.99878 1.21147 1.01371 0.89287 0.98286 1.20830 0.91424 0.99771 0.98768 1.19909 0.95761 0.91510 1.05000 1.18993 0.79682 0.88068 0.83074 1.90657 1.65870 1.50063 1.40596 1.43474 1.31178 1.08337 1.35100 1.18577 1.41920 0.92826 0.94404 0.93213 1.26201 0.94444 0.95765 1.01795 1.69851 1.26532 1.28201 1.28392 0.86225 0.81711 0.79920 0.78069 1.15163 1.20277 1.16031 1.19895 0.90238 0.91162 0.93792 1.29970 0.94414 0.92274 0.93489 1.81146 1.11332 1.11721 1.08861 1.21462 0.99091 0.91059 0.99686 1.17682 0.93323 0.92094 1.02135 1.20944 1.00658 0.90240 1.08277 1.18173 0.89144 0.85966 1.00129 1.86132 1.20796 1.27970 1.88472 1.23364 0.76768 1.05667 1.02021 0.86364 0.90931 0.91161 0.80515 0.80943 0.84959 0.90468 0.86726 0.82849 0.86560 0.83820 0.92308 0.91942 0.85731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.80 113.37 1.11 1.22 16 2 O -0.32 -6.23 10.25 -77.71 -0.80 -7.03 16 3 C 0.12 2.45 6.67 22.38 0.15 2.60 16 4 C -0.17 -2.98 8.72 22.40 0.20 -2.79 16 5 C -0.04 -0.87 5.75 -21.23 -0.12 -0.99 16 6 C -0.08 -1.75 9.72 22.30 0.22 -1.54 16 7 C -0.09 -2.56 9.61 22.29 0.21 -2.35 16 8 C -0.12 -4.20 4.92 -20.11 -0.10 -4.30 16 9 C 0.51 23.74 7.15 86.70 0.62 24.36 16 10 O -0.59 -32.60 16.89 -4.11 -0.07 -32.67 16 11 N -0.46 -21.57 2.10 -649.02 -1.36 -22.93 16 12 C -0.35 -19.74 9.30 84.10 0.78 -18.96 16 13 H 0.05 3.33 7.89 -2.91 -0.02 3.31 16 14 C 0.02 1.21 5.29 84.96 0.45 1.66 16 15 N -0.89 -50.77 13.95 21.68 0.30 -50.47 16 16 Si 0.92 36.57 25.25 68.60 1.73 38.30 16 17 H -0.23 -7.58 6.62 99.48 0.66 -6.92 16 18 H -0.28 -11.00 7.11 99.48 0.71 -10.30 16 19 H -0.24 -8.84 7.11 99.48 0.71 -8.13 16 20 C 0.17 6.44 4.39 84.57 0.37 6.81 16 21 C 0.22 8.32 13.00 89.42 1.16 9.48 16 22 N -0.45 -18.12 18.54 20.03 0.37 -17.75 16 23 C -0.09 -2.97 7.29 22.85 0.17 -2.80 16 24 C -0.05 -1.40 5.74 -21.30 -0.12 -1.53 16 25 C -0.18 -4.51 8.73 22.44 0.20 -4.31 16 26 C 0.11 2.67 6.66 22.34 0.15 2.82 16 27 O -0.32 -7.33 10.25 -78.57 -0.81 -8.14 16 28 C 0.02 0.26 9.80 113.37 1.11 1.37 16 29 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.45 7.63 -2.39 -0.02 0.43 16 31 H 0.07 0.46 7.63 -2.39 -0.02 0.44 16 32 H 0.18 1.78 6.18 -2.91 -0.02 1.76 16 33 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 34 H 0.13 3.75 8.06 -2.91 -0.02 3.72 16 35 H 0.29 14.68 8.31 -92.71 -0.77 13.91 16 36 H 0.12 4.10 3.36 -2.39 -0.01 4.09 16 37 H 0.15 4.46 5.58 -2.39 -0.01 4.45 16 38 H 0.12 3.91 4.65 -2.91 -0.01 3.90 16 39 H 0.14 3.32 6.18 -2.91 -0.02 3.30 16 40 H 0.06 0.93 7.63 -2.39 -0.02 0.91 16 41 H 0.06 0.95 7.63 -2.39 -0.02 0.93 16 42 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -77.03 355.66 6.97 -70.06 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 1.05 Total: 19.87 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 6.55 Total: 10.75 kcal Atomic # 7 Polarization: -90.46 SS G_CDS: -0.69 Total: -91.15 kcal Atomic # 8 Polarization: -46.17 SS G_CDS: -1.67 Total: -47.84 kcal Atomic # 14 Polarization: 36.57 SS G_CDS: 1.73 Total: 38.30 kcal Total: -77.03 6.97 -70.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546233937.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.684 kcal (2) G-P(sol) polarization free energy of solvation -77.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds